Wall clock time and date at job start Mon Mar 30 2020 23:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45199 * 109.46885 * 2 1 4 4 C 1.34232 * 117.00232 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99475 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00305 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.46924 * 304.99310 * 6 4 3 8 8 C 1.52997 * 109.47078 * 65.00058 * 6 4 3 9 9 O 1.42905 * 109.46972 * 185.00113 * 6 4 3 10 10 C 1.42890 * 113.99966 * 150.00185 * 9 6 4 11 11 H 1.08999 * 109.47437 * 329.99588 * 10 9 6 12 12 C 1.50703 * 109.47514 * 89.99831 * 10 9 6 13 13 H 1.08001 * 120.00020 * 240.00306 * 12 10 9 14 14 C 1.37872 * 119.99989 * 59.99722 * 12 10 9 15 15 N 1.31519 * 119.99939 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00061 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47085 * 90.00203 * 16 14 12 18 18 H 1.48499 * 109.47193 * 209.99868 * 16 14 12 19 19 H 1.48494 * 109.47379 * 330.00003 * 16 14 12 20 20 C 1.50709 * 109.47096 * 209.99936 * 10 9 6 21 21 C 1.38234 * 119.99662 * 324.72162 * 20 10 9 22 22 C 1.38232 * 119.99706 * 179.78578 * 21 20 10 23 23 C 1.38240 * 120.00067 * 0.44944 * 22 21 20 24 24 C 1.38233 * 119.99967 * 359.80497 * 23 22 21 25 25 C 1.38234 * 119.99757 * 145.00004 * 20 10 9 26 26 H 1.09002 * 109.47440 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47588 * 300.00295 * 1 2 3 28 28 H 1.09004 * 109.47074 * 60.00132 * 1 2 3 29 29 H 1.08995 * 109.47220 * 240.00178 * 2 1 3 30 30 H 1.08996 * 109.47190 * 120.00134 * 2 1 3 31 31 H 1.09002 * 109.47153 * 299.99793 * 8 6 4 32 32 H 1.09001 * 109.46832 * 179.97438 * 8 6 4 33 33 H 1.09004 * 109.47261 * 59.99965 * 8 6 4 34 34 H 0.97004 * 120.00108 * 179.97438 * 15 14 12 35 35 H 1.08001 * 119.99829 * 0.02562 * 21 20 10 36 36 H 1.08001 * 119.99780 * 180.27605 * 22 21 20 37 37 H 1.07992 * 119.99919 * 179.83010 * 23 22 21 38 38 H 1.07998 * 120.00277 * 180.02562 * 24 23 22 39 39 H 1.07992 * 120.00496 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0806 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 1 3.5152 3.4987 -0.8407 8 6 3.5517 3.6414 1.3086 9 8 5.3430 2.8647 -0.1158 10 6 5.9296 3.9855 -0.7803 11 1 5.2224 4.3894 -1.5048 12 6 6.2725 5.0473 0.2327 13 1 5.8269 6.0282 0.1586 14 6 7.1550 4.7663 1.2540 15 7 7.6980 3.5718 1.3439 16 14 7.5795 6.0821 2.5100 17 1 6.6269 6.0071 3.6467 18 1 8.9617 5.8642 3.0074 19 1 7.4875 7.4211 1.8746 20 6 7.1833 3.5473 -1.4928 21 6 7.9911 2.5743 -0.9347 22 6 9.1387 2.1692 -1.5903 23 6 9.4834 2.7438 -2.7995 24 6 8.6782 3.7206 -3.3550 25 6 7.5283 4.1226 -2.7015 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.4668 3.6969 1.3977 32 1 3.9687 4.6485 1.3092 33 1 3.9572 3.0801 2.1504 34 1 8.3192 3.3742 2.0622 35 1 7.7236 2.1278 0.0116 36 1 9.7675 1.4058 -1.1565 37 1 10.3813 2.4293 -3.3103 38 1 8.9472 4.1692 -4.2998 39 1 6.8993 4.8856 -3.1355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204596663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:53 Heat of formation + Delta-G solvation = -115.723782 kcal Electronic energy + Delta-G solvation = -22116.720224 eV Core-core repulsion = 18796.365061 eV Total energy + Delta-G solvation = -3320.355163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53215 -39.96550 -38.44086 -37.40889 -34.86930 -33.11818 -32.33930 -31.47891 -31.01655 -28.66786 -25.93883 -24.79740 -23.71607 -22.99928 -21.86751 -21.74325 -18.95472 -18.56866 -17.84615 -17.50053 -17.17699 -16.80894 -16.48120 -15.64548 -15.54129 -15.07878 -14.82634 -14.69688 -14.12829 -13.89470 -13.86917 -13.59256 -13.30713 -13.24569 -13.09734 -12.88045 -12.76509 -12.58399 -12.51169 -12.40638 -12.05513 -11.86176 -11.54418 -11.50605 -11.23890 -11.03851 -10.64972 -10.01699 -9.40344 -9.14948 -7.85836 -6.27298 0.82639 1.01116 1.17971 1.41428 1.45189 1.51203 1.52769 2.43078 3.14223 3.34824 3.49158 3.79067 4.00166 4.11480 4.13126 4.25470 4.35075 4.35602 4.38042 4.53753 4.65350 4.81813 4.84539 4.85619 4.94429 4.98588 5.13428 5.14719 5.22634 5.40031 5.47078 5.48721 5.65960 5.70660 5.88605 6.06035 6.18064 6.33729 6.55639 6.61356 6.79585 7.06272 7.49660 8.94026 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.006319 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.757144 B = 4430.056611 C = 5674.444009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.354 6.354 4 C 0.464 3.536 5 O -0.530 6.530 6 C 0.100 3.900 7 H 0.101 0.899 8 C -0.146 4.146 9 O -0.366 6.366 10 C 0.241 3.759 11 H 0.031 0.969 12 C -0.551 4.551 13 H 0.063 0.937 14 C 0.046 3.954 15 N -0.862 5.862 16 Si 0.940 3.060 17 H -0.275 1.275 18 H -0.291 1.291 19 H -0.268 1.268 20 C -0.072 4.072 21 C -0.066 4.066 22 C -0.166 4.166 23 C -0.141 4.141 24 C -0.145 4.145 25 C -0.139 4.139 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.257 0.743 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.457 -2.402 -4.328 10.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.272 6.272 4 C 0.308 3.692 5 O -0.419 6.419 6 C 0.040 3.960 7 H 0.118 0.882 8 C -0.203 4.203 9 O -0.286 6.286 10 C 0.186 3.814 11 H 0.049 0.951 12 C -0.588 4.588 13 H 0.081 0.919 14 C -0.158 4.158 15 N -0.498 5.498 16 Si 0.767 3.233 17 H -0.200 1.200 18 H -0.217 1.217 19 H -0.193 1.193 20 C -0.072 4.072 21 C -0.085 4.085 22 C -0.184 4.184 23 C -0.159 4.159 24 C -0.163 4.163 25 C -0.157 4.157 26 H 0.120 0.880 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.150 0.850 36 H 0.132 0.868 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.039 -2.977 -4.140 10.378 hybrid contribution 0.603 0.530 0.963 1.254 sum -8.437 -2.447 -3.176 9.341 Atomic orbital electron populations 1.21810 0.89526 1.04502 1.03942 1.23339 0.97580 0.79324 1.02246 1.86494 1.22987 1.33775 1.83920 1.24214 0.80817 0.92786 0.71401 1.90621 1.61382 1.44072 1.45775 1.21450 0.85339 0.87997 1.01241 0.88164 1.22068 1.01862 1.01655 0.94733 1.88154 1.14910 1.45902 1.79616 1.18796 0.88658 0.83797 0.90151 0.95124 1.21565 1.27594 0.98235 1.11370 0.91860 1.25586 0.94735 0.96547 0.98962 1.70078 1.28394 1.20834 1.30459 0.85850 0.77197 0.80333 0.79965 1.20018 1.21696 1.19290 1.20146 0.98518 0.95282 0.93277 1.21661 0.93257 0.95638 0.97933 1.21376 0.98454 1.01798 0.96804 1.21227 1.00432 0.98137 0.96098 1.21150 0.95235 0.99071 1.00872 1.21066 0.98770 1.00782 0.95105 0.87957 0.91052 0.90950 0.91673 0.91887 0.89270 0.90278 0.94259 0.93339 0.85028 0.86804 0.84589 0.84111 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 10.29 71.98 0.74 -1.49 16 2 C 0.05 1.21 6.19 71.98 0.45 1.66 16 3 O -0.35 -11.17 10.21 -51.44 -0.53 -11.70 16 4 C 0.46 18.41 7.29 71.24 0.52 18.93 16 5 O -0.53 -25.03 16.26 28.39 0.46 -24.57 16 6 C 0.10 4.01 3.24 29.85 0.10 4.11 16 7 H 0.10 3.54 7.37 -2.39 -0.02 3.52 16 8 C -0.15 -5.35 9.29 71.98 0.67 -4.68 16 9 O -0.37 -18.35 7.75 -129.95 -1.01 -19.36 16 10 C 0.24 11.79 2.59 29.11 0.08 11.87 16 11 H 0.03 1.38 7.28 -2.39 -0.02 1.36 16 12 C -0.55 -28.13 7.38 25.60 0.19 -27.94 16 13 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 14 C 0.05 2.40 5.24 84.65 0.44 2.84 16 15 N -0.86 -47.51 8.50 21.45 0.18 -47.33 16 16 Si 0.94 41.90 29.54 68.60 2.03 43.93 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 C -0.07 -3.50 4.80 -19.86 -0.10 -3.60 16 21 C -0.07 -3.33 7.46 22.27 0.17 -3.16 16 22 C -0.17 -7.20 10.05 22.27 0.22 -6.98 16 23 C -0.14 -5.25 10.05 22.27 0.22 -5.03 16 24 C -0.15 -5.33 10.05 22.27 0.22 -5.10 16 25 C -0.14 -5.83 9.68 22.27 0.22 -5.61 16 26 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 30 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 31 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.08 3.07 6.82 -2.39 -0.02 3.06 16 33 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 35 H 0.13 7.52 5.50 -2.91 -0.02 7.50 16 36 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -65.02 329.47 6.30 -58.71 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 1.03 Total: 24.51 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 4.14 Total: -24.20 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.18 Total: -47.33 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -1.07 Total: -55.62 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -65.02 6.30 -58.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204596663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.010 kcal (2) G-P(sol) polarization free energy of solvation -65.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds