Wall clock time and date at job start Mon Mar 30 2020 23:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45200 * 109.47430 * 2 1 4 4 C 1.34229 * 117.00270 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99805 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.99927 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.47076 * 179.97438 * 6 4 3 8 8 O 1.42898 * 109.47244 * 179.97438 * 7 6 4 9 9 C 1.42907 * 114.00040 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46706 * 30.00243 * 9 8 7 11 11 C 1.50705 * 109.46859 * 270.00171 * 9 8 7 12 12 H 1.07996 * 120.00315 * 299.79672 * 11 9 8 13 13 C 1.37877 * 119.99438 * 119.79297 * 11 9 8 14 14 N 1.31515 * 119.99636 * 187.31578 * 13 11 9 15 15 Si 1.86805 * 120.00507 * 7.31886 * 13 11 9 16 16 H 1.48493 * 109.47123 * 274.98544 * 15 13 11 17 17 H 1.48507 * 109.46564 * 34.98343 * 15 13 11 18 18 H 1.48498 * 109.47252 * 154.98191 * 15 13 11 19 19 C 1.50697 * 109.46983 * 150.00581 * 9 8 7 20 20 C 1.38227 * 120.00302 * 38.53987 * 19 9 8 21 21 C 1.38237 * 119.99981 * 179.78955 * 20 19 9 22 22 C 1.38233 * 119.99927 * 0.44033 * 21 20 19 23 23 C 1.38233 * 119.99964 * 359.81409 * 22 21 20 24 24 C 1.38230 * 120.00011 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46705 * 59.99980 * 1 2 3 26 26 H 1.08997 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47222 * 300.00598 * 1 2 3 28 28 H 1.09003 * 109.47222 * 239.99402 * 2 1 3 29 29 H 1.09001 * 109.46705 * 120.00020 * 2 1 3 30 30 H 1.08996 * 109.47198 * 60.00142 * 6 4 3 31 31 H 1.08994 * 109.47348 * 299.99857 * 6 4 3 32 32 H 1.09009 * 109.46790 * 59.99945 * 7 6 4 33 33 H 1.08994 * 109.47281 * 300.00346 * 7 6 4 34 34 H 0.97001 * 120.00177 * 179.97438 * 14 13 11 35 35 H 1.08000 * 119.99979 * 359.97438 * 20 19 9 36 36 H 1.08003 * 120.00172 * 180.27146 * 21 20 19 37 37 H 1.08004 * 120.00230 * 179.83553 * 22 21 20 38 38 H 1.08001 * 119.99703 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.00029 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9207 2.9373 0.0012 7 6 5.4487 2.8573 0.0023 8 8 5.9949 4.1777 0.0023 9 6 7.4234 4.2158 0.0028 10 1 7.8105 3.3358 -0.5108 11 6 7.9251 4.2294 1.4238 12 1 7.6451 5.0339 2.0877 13 6 8.7414 3.2146 1.8764 14 7 9.0620 3.1471 3.1500 15 14 9.3920 1.9355 0.6804 16 1 8.3848 0.8573 0.5125 17 1 9.6559 2.5754 -0.6334 18 1 10.6524 1.3572 1.2115 19 6 7.8930 5.4592 -0.7075 20 6 7.2086 6.6489 -0.5438 21 6 7.6419 7.7904 -1.1919 22 6 8.7543 7.7401 -2.0110 23 6 9.4356 6.5491 -2.1789 24 6 9.0049 5.4086 -1.5273 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 3.5845 3.4692 0.8911 31 1 3.5852 3.4697 -0.8887 32 1 5.7853 2.3252 -0.8875 33 1 5.7839 2.3250 0.8924 34 1 9.6360 2.4330 3.4685 35 1 6.3371 6.6873 0.0929 36 1 7.1098 8.7210 -1.0606 37 1 9.0913 8.6313 -2.5195 38 1 10.3050 6.5099 -2.8185 39 1 9.5369 4.4780 -1.6588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205072300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:37 Heat of formation + Delta-G solvation = -116.985002 kcal Electronic energy + Delta-G solvation = -21136.358668 eV Core-core repulsion = 17815.948814 eV Total energy + Delta-G solvation = -3320.409854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.38323 -38.69359 -37.05085 -36.39510 -33.07251 -32.14599 -31.53014 -30.40398 -30.14338 -27.10642 -24.56155 -23.00727 -22.49797 -21.81567 -20.51143 -20.14905 -17.68406 -17.22826 -16.74802 -16.47906 -16.06673 -15.27569 -15.08937 -14.69884 -14.37529 -13.82620 -13.68502 -13.48631 -13.06684 -12.92354 -12.80775 -12.60832 -12.41428 -12.07164 -11.78965 -11.73843 -11.63679 -11.28688 -11.00692 -10.67243 -10.60934 -10.51502 -10.36493 -10.30155 -9.82142 -9.46136 -8.78206 -8.54170 -8.25521 -7.82693 -6.27804 -4.30190 2.05584 2.09549 2.32411 2.63548 3.18106 3.22779 3.26885 4.23353 4.39371 4.59721 4.76937 4.80746 4.89894 5.11054 5.12999 5.34053 5.38396 5.49887 5.54324 5.59225 5.61942 5.71983 5.75168 5.82913 6.00646 6.16535 6.23639 6.29651 6.43182 6.44140 6.56627 6.69731 6.75828 7.10405 7.19523 7.37162 7.45139 7.69977 7.83779 8.13201 8.40439 8.85048 9.33883 10.84183 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015416 B = 0.004819 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.905101 B = 5808.567624 C = 6996.883218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.361 6.361 4 C 0.467 3.533 5 O -0.506 6.506 6 C -0.110 4.110 7 C 0.082 3.918 8 O -0.394 6.394 9 C 0.214 3.786 10 H 0.033 0.967 11 C -0.524 4.524 12 H 0.083 0.917 13 C 0.082 3.918 14 N -0.879 5.879 15 Si 0.861 3.139 16 H -0.267 1.267 17 H -0.262 1.262 18 H -0.281 1.281 19 C -0.033 4.033 20 C -0.100 4.100 21 C -0.127 4.127 22 C -0.146 4.146 23 C -0.124 4.124 24 C -0.128 4.128 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.268 0.732 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.164 -0.731 -8.953 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.278 6.278 4 C 0.310 3.690 5 O -0.393 6.393 6 C -0.148 4.148 7 C 0.004 3.996 8 O -0.315 6.315 9 C 0.159 3.841 10 H 0.051 0.949 11 C -0.561 4.561 12 H 0.101 0.899 13 C -0.123 4.123 14 N -0.516 5.516 15 Si 0.687 3.313 16 H -0.193 1.193 17 H -0.187 1.187 18 H -0.207 1.207 19 C -0.033 4.033 20 C -0.119 4.119 21 C -0.145 4.145 22 C -0.164 4.164 23 C -0.142 4.142 24 C -0.146 4.146 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.968 -0.995 -8.800 14.097 hybrid contribution 0.745 -1.155 -0.375 1.425 sum -10.223 -2.150 -9.175 13.903 Atomic orbital electron populations 1.21798 0.92736 1.02805 1.03515 1.23000 0.95238 0.80554 1.02634 1.86505 1.24831 1.32129 1.84347 1.23734 0.80311 0.92875 0.72117 1.90693 1.60282 1.43354 1.44999 1.21222 0.96741 0.90187 1.06604 1.21845 0.89665 0.86857 1.01197 1.87741 1.23465 1.24895 1.95354 1.19057 0.78468 0.91098 0.95478 0.94883 1.21260 1.30240 1.10237 0.94315 0.89910 1.25089 0.95420 0.96870 0.94910 1.69890 1.35395 1.32822 1.13451 0.87113 0.79635 0.82463 0.82039 1.19266 1.18686 1.20717 1.20147 0.94240 0.96377 0.92539 1.20952 0.99933 0.91880 0.99086 1.21062 0.97228 0.97977 0.98221 1.20898 0.97219 0.97388 1.00928 1.20932 0.99702 0.93112 1.00446 1.20977 0.97475 0.98454 0.97693 0.91528 0.90392 0.91424 0.91341 0.91205 0.86734 0.87303 0.94136 0.92078 0.92145 0.85916 0.86994 0.87204 0.87018 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.16 0.38 -0.77 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.36 -4.87 10.22 -39.25 -0.40 -5.27 16 4 C 0.47 7.37 7.96 36.00 0.29 7.66 16 5 O -0.51 -9.61 15.73 -18.75 -0.30 -9.90 16 6 C -0.11 -1.68 6.18 -27.88 -0.17 -1.85 16 7 C 0.08 1.63 5.03 37.16 0.19 1.82 16 8 O -0.39 -8.72 9.24 -35.23 -0.33 -9.05 16 9 C 0.21 5.14 2.28 -29.03 -0.07 5.07 16 10 H 0.03 0.80 4.29 -51.93 -0.22 0.58 16 11 C -0.52 -14.54 9.16 -34.44 -0.32 -14.86 16 12 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 13 C 0.08 2.31 5.47 -17.82 -0.10 2.22 16 14 N -0.88 -26.18 13.96 55.43 0.77 -25.40 16 15 Si 0.86 20.96 26.96 -169.99 -4.58 16.38 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.26 -5.99 5.90 56.52 0.33 -5.66 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C -0.03 -0.71 4.96 -104.63 -0.52 -1.23 16 20 C -0.10 -2.00 9.36 -39.59 -0.37 -2.37 16 21 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 22 C -0.15 -2.36 10.05 -39.59 -0.40 -2.76 16 23 C -0.12 -2.13 10.05 -39.59 -0.40 -2.53 16 24 C -0.13 -2.58 9.67 -39.58 -0.38 -2.96 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.04 0.80 8.04 -51.92 -0.42 0.38 16 33 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.12 2.43 7.73 -52.49 -0.41 2.02 16 36 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 37 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.11 2.27 7.16 -52.49 -0.38 1.90 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -31.64 335.76 -7.50 -39.14 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.70 Total: 3.30 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.03 Total: -14.25 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.77 Total: -25.40 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -1.02 Total: -24.22 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.58 Total: 16.38 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.64 -7.50 -39.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205072300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.844 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds