Wall clock time and date at job start Mon Mar 30 2020 23:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45200 * 109.47430 * 2 1 4 4 C 1.34229 * 117.00270 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99805 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.99927 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.47076 * 179.97438 * 6 4 3 8 8 O 1.42898 * 109.47244 * 179.97438 * 7 6 4 9 9 C 1.42907 * 114.00040 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46706 * 30.00243 * 9 8 7 11 11 C 1.50705 * 109.46859 * 270.00171 * 9 8 7 12 12 H 1.07996 * 120.00315 * 299.79672 * 11 9 8 13 13 C 1.37877 * 119.99438 * 119.79297 * 11 9 8 14 14 N 1.31515 * 119.99636 * 187.31578 * 13 11 9 15 15 Si 1.86805 * 120.00507 * 7.31886 * 13 11 9 16 16 H 1.48493 * 109.47123 * 274.98544 * 15 13 11 17 17 H 1.48507 * 109.46564 * 34.98343 * 15 13 11 18 18 H 1.48498 * 109.47252 * 154.98191 * 15 13 11 19 19 C 1.50697 * 109.46983 * 150.00581 * 9 8 7 20 20 C 1.38227 * 120.00302 * 38.53987 * 19 9 8 21 21 C 1.38237 * 119.99981 * 179.78955 * 20 19 9 22 22 C 1.38233 * 119.99927 * 0.44033 * 21 20 19 23 23 C 1.38233 * 119.99964 * 359.81409 * 22 21 20 24 24 C 1.38230 * 120.00011 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46705 * 59.99980 * 1 2 3 26 26 H 1.08997 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47222 * 300.00598 * 1 2 3 28 28 H 1.09003 * 109.47222 * 239.99402 * 2 1 3 29 29 H 1.09001 * 109.46705 * 120.00020 * 2 1 3 30 30 H 1.08996 * 109.47198 * 60.00142 * 6 4 3 31 31 H 1.08994 * 109.47348 * 299.99857 * 6 4 3 32 32 H 1.09009 * 109.46790 * 59.99945 * 7 6 4 33 33 H 1.08994 * 109.47281 * 300.00346 * 7 6 4 34 34 H 0.97001 * 120.00177 * 179.97438 * 14 13 11 35 35 H 1.08000 * 119.99979 * 359.97438 * 20 19 9 36 36 H 1.08003 * 120.00172 * 180.27146 * 21 20 19 37 37 H 1.08004 * 120.00230 * 179.83553 * 22 21 20 38 38 H 1.08001 * 119.99703 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.00029 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9207 2.9373 0.0012 7 6 5.4487 2.8573 0.0023 8 8 5.9949 4.1777 0.0023 9 6 7.4234 4.2158 0.0028 10 1 7.8105 3.3358 -0.5108 11 6 7.9251 4.2294 1.4238 12 1 7.6451 5.0339 2.0877 13 6 8.7414 3.2146 1.8764 14 7 9.0620 3.1471 3.1500 15 14 9.3920 1.9355 0.6804 16 1 8.3848 0.8573 0.5125 17 1 9.6559 2.5754 -0.6334 18 1 10.6524 1.3572 1.2115 19 6 7.8930 5.4592 -0.7075 20 6 7.2086 6.6489 -0.5438 21 6 7.6419 7.7904 -1.1919 22 6 8.7543 7.7401 -2.0110 23 6 9.4356 6.5491 -2.1789 24 6 9.0049 5.4086 -1.5273 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 3.5845 3.4692 0.8911 31 1 3.5852 3.4697 -0.8887 32 1 5.7853 2.3252 -0.8875 33 1 5.7839 2.3250 0.8924 34 1 9.6360 2.4330 3.4685 35 1 6.3371 6.6873 0.0929 36 1 7.1098 8.7210 -1.0606 37 1 9.0913 8.6313 -2.5195 38 1 10.3050 6.5099 -2.8185 39 1 9.5369 4.4780 -1.6588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205072300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:36 Heat of formation + Delta-G solvation = -135.534983 kcal Electronic energy + Delta-G solvation = -21137.163056 eV Core-core repulsion = 17815.948814 eV Total energy + Delta-G solvation = -3321.214242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62607 -40.22112 -38.57350 -37.73741 -35.02043 -33.60379 -32.69600 -31.78906 -31.54089 -28.99082 -25.95183 -24.56493 -23.69839 -23.20486 -21.88883 -21.67402 -19.32955 -18.95465 -17.94683 -17.86569 -17.53509 -16.86795 -16.58368 -16.08982 -16.07358 -15.18185 -15.10284 -14.89910 -14.74591 -14.27999 -14.14798 -13.97504 -13.67031 -13.35019 -13.30584 -12.97692 -12.94320 -12.80783 -12.53404 -12.24582 -12.12958 -11.87228 -11.80600 -11.66140 -11.56669 -11.29861 -10.90101 -10.30971 -9.67433 -9.40739 -8.45768 -6.52659 0.61707 0.66356 1.05909 1.21645 1.24071 1.30917 1.48405 2.17907 2.75412 3.10301 3.16414 3.61022 3.95778 4.00523 4.03267 4.07543 4.13787 4.27811 4.31827 4.34006 4.40887 4.42657 4.60072 4.74570 4.82298 4.85107 4.88177 4.91537 4.91700 5.12433 5.23405 5.31948 5.35651 5.39686 5.71040 5.75016 5.89943 6.04895 6.28042 6.45609 6.59848 6.65642 7.16318 8.70447 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015416 B = 0.004819 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.905101 B = 5808.567624 C = 6996.883218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.355 6.355 4 C 0.474 3.526 5 O -0.544 6.544 6 C -0.100 4.100 7 C 0.078 3.922 8 O -0.394 6.394 9 C 0.220 3.780 10 H 0.030 0.970 11 C -0.528 4.528 12 H 0.038 0.962 13 C 0.031 3.969 14 N -0.928 5.928 15 Si 0.916 3.084 16 H -0.269 1.269 17 H -0.238 1.238 18 H -0.273 1.273 19 C -0.069 4.069 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.134 4.134 23 C -0.120 4.120 24 C -0.147 4.147 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.127 0.873 31 H 0.141 0.859 32 H 0.043 0.957 33 H 0.026 0.974 34 H 0.271 0.729 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.730 0.377 -11.741 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 O -0.272 6.272 4 C 0.318 3.682 5 O -0.434 6.434 6 C -0.137 4.137 7 C 0.001 3.999 8 O -0.314 6.314 9 C 0.164 3.836 10 H 0.048 0.952 11 C -0.566 4.566 12 H 0.056 0.944 13 C -0.169 4.169 14 N -0.567 5.567 15 Si 0.739 3.261 16 H -0.195 1.195 17 H -0.161 1.161 18 H -0.199 1.199 19 C -0.069 4.069 20 C -0.137 4.137 21 C -0.140 4.140 22 C -0.152 4.152 23 C -0.138 4.138 24 C -0.165 4.165 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.145 0.855 31 H 0.159 0.841 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.566 0.134 -11.605 16.385 hybrid contribution 0.811 -1.394 0.481 1.683 sum -10.756 -1.260 -11.124 15.525 Atomic orbital electron populations 1.21821 0.89855 1.04478 1.03915 1.23361 0.97447 0.79104 1.02542 1.86499 1.23142 1.33905 1.83608 1.23708 0.80921 0.92404 0.71126 1.90683 1.61302 1.44470 1.46993 1.21116 0.93219 0.90652 1.08756 1.21918 0.92873 0.85532 0.99600 1.87706 1.22497 1.26046 1.95183 1.18887 0.78902 0.92529 0.93272 0.95220 1.21402 1.30267 1.08802 0.96112 0.94395 1.25847 0.95702 0.98985 0.96394 1.70020 1.36992 1.34238 1.15420 0.86223 0.79065 0.79782 0.81001 1.19455 1.16113 1.19850 1.20103 0.96041 0.96007 0.94769 1.21008 1.00069 0.92648 0.99996 1.21438 0.97545 0.98000 0.97053 1.21425 0.95808 0.98466 0.99468 1.21344 1.00464 0.92282 0.99696 1.21115 0.97172 0.99801 0.98455 0.90877 0.88070 0.91233 0.91161 0.91744 0.85489 0.84146 0.93901 0.95590 0.91982 0.87050 0.83684 0.82883 0.83557 0.87205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 10.29 71.98 0.74 -1.14 16 2 C 0.05 1.01 6.19 71.98 0.45 1.46 16 3 O -0.35 -9.18 10.22 -51.40 -0.53 -9.71 16 4 C 0.47 14.84 7.96 71.23 0.57 15.40 16 5 O -0.54 -21.00 15.73 21.95 0.35 -20.65 16 6 C -0.10 -3.01 6.18 29.85 0.18 -2.83 16 7 C 0.08 3.19 5.03 71.98 0.36 3.55 16 8 O -0.39 -17.94 9.24 -148.98 -1.38 -19.32 16 9 C 0.22 10.86 2.28 29.10 0.07 10.93 16 10 H 0.03 1.47 4.29 -2.39 -0.01 1.46 16 11 C -0.53 -30.91 9.16 25.60 0.23 -30.67 16 12 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 13 C 0.03 1.82 5.47 84.65 0.46 2.29 16 14 N -0.93 -57.92 13.96 21.45 0.30 -57.62 16 15 Si 0.92 44.27 26.96 68.60 1.85 46.12 16 16 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 17 H -0.24 -10.45 5.90 99.48 0.59 -9.86 16 18 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 19 C -0.07 -3.04 4.96 -19.87 -0.10 -3.13 16 20 C -0.12 -4.71 9.36 22.27 0.21 -4.50 16 21 C -0.12 -3.80 10.05 22.27 0.22 -3.58 16 22 C -0.13 -3.72 10.05 22.27 0.22 -3.50 16 23 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 24 C -0.15 -5.76 9.67 22.27 0.22 -5.54 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 30 H 0.13 3.52 8.14 -2.39 -0.02 3.50 16 31 H 0.14 3.35 8.14 -2.39 -0.02 3.33 16 32 H 0.04 1.72 8.04 -2.38 -0.02 1.70 16 33 H 0.03 1.23 8.10 -2.39 -0.02 1.21 16 34 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.11 4.51 7.73 -2.91 -0.02 4.49 16 36 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 37 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 39 H 0.11 4.26 7.16 -2.91 -0.02 4.24 16 Total: -1.00 -73.02 335.76 5.56 -67.46 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.91 Total: 18.47 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 4.06 Total: -24.75 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.30 Total: -57.62 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -1.56 Total: -49.68 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.85 Total: 46.12 kcal Total: -73.02 5.56 -67.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205072300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.078 kcal (2) G-P(sol) polarization free energy of solvation -73.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds