Wall clock time and date at job start Mon Mar 30 2020 23:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3 8 8 H 1.09002 * 109.47051 * 304.99389 * 7 6 4 9 9 O 1.42902 * 109.47328 * 64.99684 * 7 6 4 10 10 C 1.42899 * 113.99997 * 210.00068 * 9 7 6 11 11 C 1.50701 * 109.46779 * 179.97438 * 10 9 7 12 12 H 1.07989 * 120.00265 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99459 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00083 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00486 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47141 * 90.00368 * 15 13 11 17 17 H 1.48506 * 109.47240 * 210.00316 * 15 13 11 18 18 H 1.48501 * 109.46819 * 330.00079 * 15 13 11 19 19 C 1.50700 * 109.47144 * 185.00132 * 7 6 4 20 20 C 1.38241 * 119.99827 * 279.72331 * 19 7 6 21 21 C 1.38232 * 119.99966 * 179.79247 * 20 19 7 22 22 C 1.38237 * 119.99773 * 0.43543 * 21 20 19 23 23 C 1.38228 * 120.00472 * 359.81708 * 22 21 20 24 24 C 1.38228 * 120.00326 * 99.99831 * 19 7 6 25 25 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 26 26 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 27 27 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 29 29 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 30 30 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 31 31 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 32 32 H 1.08998 * 109.47032 * 299.99870 * 10 9 7 33 33 H 1.09001 * 109.47122 * 59.99987 * 10 9 7 34 34 H 0.96996 * 120.00804 * 180.02562 * 14 13 11 35 35 H 1.08000 * 119.99672 * 0.02562 * 20 19 7 36 36 H 1.08001 * 119.99971 * 180.27836 * 21 20 19 37 37 H 1.08008 * 119.99276 * 179.83758 * 22 21 20 38 38 H 1.08000 * 120.00554 * 179.97438 * 23 22 21 39 39 H 1.08005 * 119.99906 * 359.97438 * 24 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4485 2.8573 0.0107 8 1 5.7776 2.2472 0.8518 9 8 5.8987 2.2674 -1.2106 10 6 7.1214 1.5382 -1.0878 11 6 7.4995 0.9621 -2.4280 12 1 6.8689 1.1352 -3.2875 13 6 8.6499 0.2133 -2.5567 14 7 8.9802 -0.2891 -3.7264 15 14 9.7403 -0.0868 -1.0699 16 1 9.3062 -1.3280 -0.3801 17 1 11.1505 -0.2334 -1.5118 18 1 9.6312 1.0627 -0.1361 19 6 6.0238 4.2441 0.1407 20 6 6.1102 5.0635 -0.9694 21 6 6.6339 6.3371 -0.8493 22 6 7.0795 6.7881 0.3791 23 6 6.9980 5.9670 1.4881 24 6 6.4703 4.6949 1.3688 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5137 0.8901 30 1 3.5878 3.4722 -0.8839 31 1 3.5816 3.4669 0.8960 32 1 7.9103 2.2070 -0.7437 33 1 6.9915 0.7294 -0.3687 34 1 9.7894 -0.8163 -3.8169 35 1 5.7650 4.7098 -1.9297 36 1 6.6972 6.9788 -1.7157 37 1 7.4911 7.7824 0.4723 38 1 7.3465 6.3193 2.4477 39 1 6.4066 4.0533 2.2353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205603920.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:59 Heat of formation + Delta-G solvation = -134.615756 kcal Electronic energy + Delta-G solvation = -21506.484785 eV Core-core repulsion = 18185.310404 eV Total energy + Delta-G solvation = -3321.174381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61647 -40.38288 -38.52851 -37.52730 -35.08242 -33.82488 -32.63123 -31.74018 -30.85574 -29.92185 -25.93904 -24.16853 -23.91921 -23.31188 -22.30337 -21.41692 -19.14816 -18.85620 -18.01481 -17.78082 -17.34995 -17.20327 -16.47303 -16.25622 -15.49470 -15.41899 -15.22464 -15.01726 -14.59093 -14.19049 -14.16859 -13.86671 -13.63209 -13.53126 -13.45269 -12.95986 -12.83947 -12.75548 -12.51835 -12.28194 -12.09400 -11.91949 -11.79033 -11.54283 -11.51593 -11.34324 -10.97030 -10.43501 -9.76880 -9.66358 -8.40674 -6.46784 0.42236 0.55535 1.22463 1.26664 1.29889 1.40416 1.67754 2.25045 2.87790 2.91604 2.95142 3.59026 3.77682 3.98935 4.03962 4.07878 4.13285 4.22634 4.28125 4.34456 4.37016 4.43639 4.54359 4.68656 4.72185 4.81875 4.87500 4.92475 4.99166 5.10629 5.14477 5.21071 5.42134 5.47344 5.59537 5.65841 5.68760 5.93900 6.15715 6.55171 6.68503 6.77650 7.16509 8.76527 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.009273 B = 0.007175 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.720895 B = 3901.730437 C = 6255.105056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 O -0.360 6.360 4 C 0.459 3.541 5 O -0.532 6.532 6 C -0.095 4.095 7 C 0.128 3.872 8 H 0.064 0.936 9 O -0.382 6.382 10 C 0.195 3.805 11 C -0.537 4.537 12 H 0.031 0.969 13 C 0.017 3.983 14 N -0.940 5.940 15 Si 0.947 3.053 16 H -0.264 1.264 17 H -0.266 1.266 18 H -0.249 1.249 19 C -0.123 4.123 20 C -0.109 4.109 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.119 4.119 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.155 0.845 32 H 0.005 0.995 33 H -0.002 1.002 34 H 0.273 0.727 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.444 11.799 14.490 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.303 3.697 5 O -0.420 6.420 6 C -0.132 4.132 7 C 0.070 3.930 8 H 0.082 0.918 9 O -0.301 6.301 10 C 0.120 3.880 11 C -0.575 4.575 12 H 0.049 0.951 13 C -0.181 4.181 14 N -0.580 5.580 15 Si 0.768 3.232 16 H -0.189 1.189 17 H -0.191 1.191 18 H -0.173 1.173 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.141 4.141 24 C -0.137 4.137 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.140 0.860 31 H 0.172 0.828 32 H 0.022 0.978 33 H 0.016 0.984 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.231 11.388 14.208 21.935 hybrid contribution 0.789 -0.952 -0.085 1.239 sum -11.442 10.435 14.124 20.960 Atomic orbital electron populations 1.21800 0.89691 1.04377 1.03940 1.23266 0.97496 0.79537 1.02038 1.86476 1.23758 1.33387 1.84083 1.24088 0.80699 0.93266 0.71678 1.90749 1.61145 1.44425 1.45723 1.21575 0.92635 0.90473 1.08488 1.20786 0.92708 0.90728 0.88814 0.91823 1.87876 1.41583 1.69416 1.31239 1.20134 0.82612 0.89722 0.95556 1.21092 1.08438 1.33090 0.94903 0.95052 1.25731 0.98547 0.94245 0.99619 1.70014 1.26396 1.35835 1.25711 0.85732 0.78228 0.80000 0.79207 1.18854 1.19095 1.17285 1.20306 1.01579 0.95367 0.95037 1.21082 0.99190 0.94302 0.98100 1.21418 0.98881 0.95474 0.99023 1.21530 0.98890 1.00943 0.92312 1.21447 0.99133 0.93461 1.00059 1.21269 0.98627 0.97275 0.96527 0.90500 0.91342 0.88335 0.92815 0.91331 0.86000 0.82780 0.97777 0.98405 0.91794 0.87312 0.84490 0.83265 0.83123 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 10.29 71.98 0.74 -1.49 16 2 C 0.05 1.24 6.19 71.98 0.45 1.68 16 3 O -0.36 -10.23 10.22 -51.41 -0.53 -10.75 16 4 C 0.46 15.48 7.84 71.23 0.56 16.04 16 5 O -0.53 -23.07 15.17 27.01 0.41 -22.66 16 6 C -0.09 -2.66 5.50 29.85 0.16 -2.49 16 7 C 0.13 4.59 1.86 29.85 0.06 4.64 16 8 H 0.06 2.33 7.46 -2.39 -0.02 2.31 16 9 O -0.38 -18.56 8.52 -135.18 -1.15 -19.71 16 10 C 0.20 10.64 4.56 71.24 0.32 10.96 16 11 C -0.54 -34.52 9.99 25.60 0.26 -34.27 16 12 H 0.03 2.24 8.06 -2.92 -0.02 2.22 16 13 C 0.02 1.03 5.47 84.65 0.46 1.49 16 14 N -0.94 -61.23 13.96 21.45 0.30 -60.93 16 15 Si 0.95 46.26 27.47 68.60 1.88 48.15 16 16 H -0.26 -12.43 7.11 99.48 0.71 -11.73 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 19 C -0.12 -3.84 4.93 -19.87 -0.10 -3.93 16 20 C -0.11 -3.43 9.36 22.27 0.21 -3.23 16 21 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16 22 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 23 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 24 C -0.12 -3.02 9.67 22.27 0.22 -2.80 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 29 H 0.07 1.66 8.13 -2.38 -0.02 1.64 16 30 H 0.12 3.21 8.14 -2.38 -0.02 3.19 16 31 H 0.15 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.00 0.24 7.20 -2.39 -0.02 0.22 16 33 H 0.00 -0.10 7.51 -2.39 -0.02 -0.11 16 34 H 0.27 16.29 8.31 -92.71 -0.77 15.52 16 35 H 0.11 3.81 7.77 -2.91 -0.02 3.79 16 36 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 37 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.14 2.89 8.04 -2.91 -0.02 2.87 16 Total: -1.00 -80.51 337.38 5.89 -74.62 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.97 Total: 12.41 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 4.00 Total: -21.12 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.30 Total: -60.93 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -1.27 Total: -53.12 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.88 Total: 48.15 kcal Total: -80.51 5.89 -74.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205603920.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.994 kcal (2) G-P(sol) polarization free energy of solvation -80.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds