Wall clock time and date at job start Mon Mar 30 2020 23:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 116.99626 * 2 1 4 4 C 1.38653 * 119.90315 * 359.93322 * 3 2 1 5 5 C 1.38154 * 119.92348 * 179.97438 * 4 3 2 6 6 C 1.38043 * 120.01314 * 0.12530 * 5 4 3 7 7 C 1.39152 * 120.33344 * 0.02562 * 6 5 4 8 8 C 1.38317 * 119.73331 * 359.81014 * 7 6 5 9 9 C 1.50761 * 121.42967 * 180.24758 * 8 7 6 10 10 H 1.09002 * 109.42823 * 102.23623 * 9 8 7 11 11 O 1.42896 * 109.43436 * 222.14367 * 9 8 7 12 12 C 1.42900 * 114.00010 * 210.00067 * 11 9 8 13 13 C 1.53005 * 109.47304 * 180.02562 * 12 11 9 14 14 C 1.50695 * 109.47088 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00496 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99572 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 C 1.53069 * 109.68984 * 342.21432 * 9 8 7 23 23 C 1.53424 * 108.30068 * 48.14767 * 22 9 8 24 24 O 1.35854 * 118.47331 * 179.54242 * 7 6 5 25 25 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46969 * 299.99993 * 1 2 3 27 27 H 1.09002 * 109.47102 * 59.99957 * 1 2 3 28 28 H 1.08004 * 120.03730 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.99552 * 180.11317 * 5 4 3 30 30 H 1.08001 * 119.83144 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.47002 * 60.00466 * 12 11 9 32 32 H 1.09001 * 109.47588 * 300.00292 * 12 11 9 33 33 H 1.09002 * 109.46935 * 60.00150 * 13 12 11 34 34 H 1.08998 * 109.47061 * 300.00943 * 13 12 11 35 35 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 36 36 H 1.09000 * 109.69914 * 167.84606 * 22 9 8 37 37 H 1.08998 * 109.69978 * 288.44879 * 22 9 8 38 38 H 1.08999 * 109.68375 * 175.58494 * 23 22 9 39 39 H 1.09003 * 109.73127 * 55.03142 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2887 2.3725 -0.0014 5 6 1.9154 3.6037 -0.0009 6 6 3.2939 3.6768 -0.0016 7 6 4.0593 2.5147 -0.0033 8 6 3.4336 1.2812 -0.0004 9 6 4.2253 -0.0018 0.0034 10 1 4.2297 -0.4222 1.0091 11 8 3.6251 -0.9335 -0.8987 12 6 3.8050 -2.3014 -0.5264 13 6 3.1257 -3.2043 -1.5580 14 6 3.3149 -4.6468 -1.1650 15 1 3.8643 -4.8948 -0.2689 16 6 2.7866 -5.6500 -1.9496 17 7 2.1180 -5.3481 -3.0411 18 14 3.0205 -7.4380 -1.4622 19 1 2.4145 -7.6704 -0.1264 20 1 4.4712 -7.7508 -1.4087 21 1 2.3612 -8.3144 -2.4634 22 6 5.6642 0.2787 -0.4368 23 6 6.1835 1.4859 0.3548 24 8 5.4129 2.6307 -0.0135 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2102 2.3148 -0.0021 29 1 1.3268 4.5091 -0.0001 30 1 3.7808 4.6409 -0.0016 31 1 3.3616 -2.4722 0.4546 32 1 4.8700 -2.5307 -0.4887 33 1 3.5695 -3.0333 -2.5388 34 1 2.0608 -2.9751 -1.5962 35 1 1.9961 -4.4195 -3.2940 36 1 6.2877 -0.5914 -0.2309 37 1 5.6852 0.5023 -1.5034 38 1 7.2331 1.6576 0.1161 39 1 6.0758 1.2993 1.4234 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205630801.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:19 Heat of formation + Delta-G solvation = -126.708998 kcal Electronic energy + Delta-G solvation = -22038.836397 eV Core-core repulsion = 18718.004879 eV Total energy + Delta-G solvation = -3320.831518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.00021 -40.12197 -38.97517 -37.50070 -35.87964 -34.01894 -31.91562 -31.33319 -30.51458 -28.21266 -26.63814 -25.72819 -24.76725 -23.26066 -23.01717 -21.15068 -19.49752 -18.97376 -18.26132 -17.80111 -17.12148 -17.02640 -16.60303 -16.43159 -16.02623 -15.75303 -15.68369 -15.45421 -14.77671 -14.48650 -14.21290 -13.95026 -13.66809 -13.50261 -13.35625 -12.99181 -12.77202 -12.57905 -12.42169 -12.30028 -11.98280 -11.92212 -11.68114 -11.64816 -11.51583 -10.84577 -10.64752 -10.46942 -9.45440 -9.06270 -8.75467 -6.46491 0.22846 0.42379 1.52274 1.61674 1.81197 2.15661 2.38130 2.52521 2.62816 2.95631 3.11893 3.54175 3.61934 3.78674 3.91608 4.04746 4.13472 4.19877 4.26133 4.28713 4.32661 4.34982 4.42437 4.50596 4.52736 4.62100 4.66673 4.77288 4.82475 4.95311 5.11332 5.20735 5.28662 5.33679 5.42467 5.63728 5.85540 6.09997 6.27560 6.34386 6.47095 6.50633 7.37644 8.65572 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023083 B = 0.004547 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.703637 B = 6156.198270 C = 7104.942777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.323 6.323 3 C 0.160 3.840 4 C -0.253 4.253 5 C -0.034 4.034 6 C -0.198 4.198 7 C 0.166 3.834 8 C -0.230 4.230 9 C 0.137 3.863 10 H 0.062 0.938 11 O -0.384 6.384 12 C 0.099 3.901 13 C 0.021 3.979 14 C -0.620 4.620 15 H 0.057 0.943 16 C -0.036 4.036 17 N -0.933 5.933 18 Si 1.124 2.876 19 H -0.266 1.266 20 H -0.266 1.266 21 H -0.282 1.282 22 C -0.180 4.180 23 C 0.068 3.932 24 O -0.319 6.319 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.151 0.849 29 H 0.170 0.830 30 H 0.155 0.845 31 H 0.036 0.964 32 H 0.043 0.957 33 H -0.014 1.014 34 H -0.011 1.011 35 H 0.253 0.747 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.144 0.856 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.364 18.676 10.168 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.236 6.236 3 C 0.114 3.886 4 C -0.271 4.271 5 C -0.052 4.052 6 C -0.216 4.216 7 C 0.121 3.879 8 C -0.232 4.232 9 C 0.080 3.920 10 H 0.080 0.920 11 O -0.304 6.304 12 C 0.023 3.977 13 C -0.017 4.017 14 C -0.658 4.658 15 H 0.076 0.924 16 C -0.234 4.234 17 N -0.570 5.570 18 Si 0.943 3.057 19 H -0.191 1.191 20 H -0.190 1.190 21 H -0.207 1.207 22 C -0.218 4.218 23 C -0.006 4.006 24 O -0.233 6.233 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.168 0.832 29 H 0.188 0.812 30 H 0.172 0.828 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.004 0.996 34 H 0.008 0.992 35 H 0.063 0.937 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.162 0.838 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.124 17.151 9.510 19.726 hybrid contribution 0.010 1.138 0.266 1.169 sum 2.133 18.289 9.776 20.848 Atomic orbital electron populations 1.23260 0.77177 1.04461 1.02462 1.86283 1.22748 1.27069 1.87488 1.19009 0.91357 0.85328 0.92917 1.21449 1.01190 0.91779 1.12714 1.21136 0.93374 0.97876 0.92791 1.20807 0.93731 0.96873 1.10216 1.18618 0.82992 0.92072 0.94249 1.19255 0.92454 0.94391 1.17059 1.20571 0.91298 0.87093 0.93087 0.91972 1.88006 1.77309 1.15500 1.49581 1.22245 0.98179 0.79986 0.97311 1.19014 0.94369 0.94300 0.93967 1.22283 1.39100 0.92013 1.12361 0.92433 1.27601 0.92358 1.10347 0.93052 1.70903 1.40070 1.20926 1.25097 0.82880 0.77602 0.68978 0.76229 1.19094 1.19049 1.20736 1.22746 0.96275 1.00988 1.01774 1.23207 0.96274 0.82059 0.99088 1.85966 1.14213 1.39297 1.83778 0.88757 0.90353 0.91745 0.83160 0.81215 0.82774 0.94536 0.93911 0.99551 0.99246 0.93740 0.88566 0.91231 0.83847 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.81 113.37 1.11 1.66 16 2 O -0.32 -11.78 8.57 -72.29 -0.62 -12.40 16 3 C 0.16 5.26 6.53 22.54 0.15 5.40 16 4 C -0.25 -6.20 9.03 22.35 0.20 -6.00 16 5 C -0.03 -0.68 10.03 22.20 0.22 -0.46 16 6 C -0.20 -4.47 9.93 22.44 0.22 -4.25 16 7 C 0.17 4.72 6.47 22.51 0.15 4.86 16 8 C -0.23 -7.65 5.59 -19.66 -0.11 -7.76 16 9 C 0.14 4.82 2.55 29.89 0.08 4.89 16 10 H 0.06 2.12 7.79 -2.39 -0.02 2.11 16 11 O -0.38 -17.12 8.25 -128.80 -1.06 -18.19 16 12 C 0.10 4.66 5.68 71.98 0.41 5.07 16 13 C 0.02 1.18 4.65 29.85 0.14 1.32 16 14 C -0.62 -36.81 9.11 25.60 0.23 -36.58 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C -0.04 -2.15 5.46 84.66 0.46 -1.69 16 17 N -0.93 -59.86 13.65 21.45 0.29 -59.57 16 18 Si 1.12 50.58 29.90 68.60 2.05 52.63 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 C -0.18 -5.06 5.80 30.76 0.18 -4.88 16 23 C 0.07 1.42 7.03 72.12 0.51 1.93 16 24 O -0.32 -8.19 10.27 -91.91 -0.94 -9.13 16 25 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.08 1.57 7.66 -2.39 -0.02 1.55 16 27 H 0.06 1.51 7.65 -2.39 -0.02 1.49 16 28 H 0.15 2.90 6.28 -2.91 -0.02 2.88 16 29 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H -0.01 -0.85 8.01 -2.39 -0.02 -0.87 16 34 H -0.01 -0.67 8.01 -2.39 -0.02 -0.69 16 35 H 0.25 16.73 7.22 -92.70 -0.67 16.06 16 36 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -75.94 323.05 4.80 -71.14 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.13 Total: 11.99 kcal Atomic # 6 Polarization: -40.42 SS G_CDS: 3.95 Total: -36.47 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.29 Total: -59.57 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -2.63 Total: -39.72 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Total: -75.94 4.80 -71.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205630801.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.567 kcal (2) G-P(sol) polarization free energy of solvation -75.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds