Wall clock time and date at job start Mon Mar 30 2020 23:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34228 * 117.00563 * 2 1 4 4 O 1.20826 * 119.99356 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00421 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.47204 * 55.00155 * 5 3 2 7 7 C 1.52995 * 109.47090 * 295.00188 * 5 3 2 8 8 C 1.50707 * 109.47301 * 174.99821 * 7 5 3 9 9 C 1.38238 * 119.99792 * 90.00016 * 8 7 5 10 10 C 1.38235 * 119.99712 * 179.97438 * 9 8 7 11 11 C 1.38234 * 120.00220 * 359.97124 * 10 9 8 12 12 C 1.38233 * 120.00037 * 0.28719 * 11 10 9 13 13 C 1.38234 * 120.00179 * 269.97953 * 8 7 5 14 14 O 1.42904 * 109.47156 * 174.99930 * 5 3 2 15 15 C 1.42896 * 113.99976 * 269.99963 * 14 5 3 16 16 C 1.53005 * 109.46945 * 179.97438 * 15 14 5 17 17 C 1.50695 * 109.47035 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00310 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00104 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00465 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99730 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47033 * 90.00389 * 21 19 17 23 23 H 1.48508 * 109.47106 * 209.99960 * 21 19 17 24 24 H 1.48490 * 109.47300 * 330.00190 * 21 19 17 25 25 H 1.09010 * 109.47177 * 59.99682 * 1 2 3 26 26 H 1.09003 * 109.47196 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47274 * 300.00411 * 1 2 3 28 28 H 1.09005 * 109.47610 * 55.00124 * 7 5 3 29 29 H 1.09000 * 109.47256 * 294.99466 * 7 5 3 30 30 H 1.08005 * 120.00068 * 359.97438 * 9 8 7 31 31 H 1.07999 * 119.99770 * 179.97438 * 10 9 8 32 32 H 1.08002 * 119.99744 * 180.02562 * 11 10 9 33 33 H 1.07998 * 120.00395 * 179.72811 * 12 11 10 34 34 H 1.07999 * 119.99968 * 359.97438 * 13 8 7 35 35 H 1.09003 * 109.47140 * 300.00146 * 15 14 5 36 36 H 1.08999 * 109.47100 * 59.99870 * 15 14 5 37 37 H 1.08989 * 109.47224 * 300.00135 * 16 15 14 38 38 H 1.09004 * 109.46870 * 60.00565 * 16 15 14 39 39 H 0.96994 * 120.00560 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9597 0.7053 -0.8427 7 6 4.1080 0.6923 1.3064 8 6 5.6138 0.6580 1.2551 9 6 6.3455 1.7414 1.7043 10 6 7.7267 1.7097 1.6578 11 6 8.3762 0.5945 1.1626 12 6 7.6444 -0.4868 0.7084 13 6 6.2633 -0.4569 0.7593 14 8 3.9718 2.6400 -0.1179 15 6 4.1421 3.0819 -1.4661 16 6 4.5737 4.5498 -1.4710 17 6 4.7540 5.0157 -2.8927 18 1 4.5779 4.3333 -3.7111 19 6 5.1437 6.3132 -3.1489 20 7 5.3006 6.7200 -4.3897 21 14 5.4476 7.4937 -1.7335 22 1 6.8707 7.4115 -1.3172 23 1 5.1388 8.8793 -2.1696 24 1 4.5751 7.1290 -0.5887 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.7259 -0.3199 1.4391 29 1 3.7871 1.3144 2.1419 30 1 5.8381 2.6126 2.0916 31 1 8.2984 2.5563 2.0083 32 1 9.4554 0.5696 1.1266 33 1 8.1517 -1.3564 0.3174 34 1 5.6916 -1.3037 0.4090 35 1 4.9065 2.4764 -1.9531 36 1 3.1997 2.9789 -2.0040 37 1 3.8091 5.1550 -0.9841 38 1 5.5161 4.6532 -0.9329 39 1 5.5744 7.6328 -4.5699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205631057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:54 Heat of formation + Delta-G solvation = -115.270914 kcal Electronic energy + Delta-G solvation = -21475.093458 eV Core-core repulsion = 18154.757932 eV Total energy + Delta-G solvation = -3320.335526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.57471 -39.21486 -37.68484 -36.15129 -33.87326 -32.83739 -30.80639 -30.58086 -29.35132 -27.51024 -24.84817 -24.42325 -22.49437 -21.29785 -20.81042 -20.50649 -17.80417 -17.34497 -16.91992 -16.56396 -16.27079 -15.71650 -15.09459 -14.87686 -14.53658 -14.38318 -13.94285 -13.56600 -13.32562 -13.17138 -12.87415 -12.71185 -12.42897 -12.26277 -12.11869 -11.53457 -11.51468 -11.13983 -10.96556 -10.85011 -10.81765 -10.69561 -10.20254 -10.01485 -9.81461 -9.25777 -9.15722 -8.82031 -8.63704 -8.54384 -6.06369 -4.05808 1.37260 1.49944 2.25204 2.63210 3.33201 3.40150 3.47701 3.83658 3.99448 4.45959 4.60103 4.85082 4.92299 5.01947 5.04477 5.06896 5.10129 5.12098 5.23192 5.28384 5.39792 5.43420 5.56762 5.73354 5.75902 6.05213 6.08182 6.12634 6.13676 6.34515 6.51379 6.60415 6.62425 6.69195 7.01296 7.08047 7.37942 7.54309 7.76256 7.87627 8.47810 8.95249 9.54908 11.06541 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011008 B = 0.006109 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.887763 B = 4582.623467 C = 6512.724310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.432 3.568 4 O -0.482 6.482 5 C 0.108 3.892 6 H 0.098 0.902 7 C -0.070 4.070 8 C -0.081 4.081 9 C -0.092 4.092 10 C -0.119 4.119 11 C -0.122 4.122 12 C -0.124 4.124 13 C -0.117 4.117 14 O -0.352 6.352 15 C 0.073 3.927 16 C -0.005 4.005 17 C -0.523 4.523 18 H 0.072 0.928 19 C 0.071 3.929 20 N -0.901 5.901 21 Si 0.879 3.121 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.262 1.262 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.026 0.974 38 H 0.021 0.979 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 -17.612 13.191 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.281 6.281 3 C 0.273 3.727 4 O -0.367 6.367 5 C 0.047 3.953 6 H 0.115 0.885 7 C -0.107 4.107 8 C -0.081 4.081 9 C -0.110 4.110 10 C -0.138 4.138 11 C -0.140 4.140 12 C -0.142 4.142 13 C -0.135 4.135 14 O -0.270 6.270 15 C -0.003 4.003 16 C -0.043 4.043 17 C -0.561 4.561 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.540 5.540 21 Si 0.706 3.294 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.187 1.187 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.181 -17.003 13.227 21.574 hybrid contribution -0.136 0.704 0.178 0.739 sum -1.317 -16.299 13.405 21.145 Atomic orbital electron populations 1.23235 0.76744 1.03383 1.02619 1.86506 1.23207 1.33894 1.84477 1.24957 0.93118 0.81576 0.73093 1.90709 1.66611 1.36244 1.43112 1.21541 0.85166 0.87914 1.00647 0.88479 1.20627 0.92261 1.01885 0.95930 1.19592 0.94347 0.94541 0.99660 1.21133 0.93859 0.97617 0.98360 1.21179 0.94659 0.98082 0.99830 1.21142 0.99751 0.93951 0.99136 1.21066 0.94037 0.98679 1.00433 1.21029 0.94616 0.97898 0.99981 1.88068 1.86049 1.22886 1.30020 1.22853 0.98951 0.98534 0.79917 1.19501 0.96770 0.89732 0.98271 1.20902 1.46883 0.97608 0.90677 0.90965 1.24931 0.94555 0.97974 0.95603 1.69899 1.47530 1.17862 1.18679 0.86768 0.79154 0.80167 0.83271 1.20118 1.21283 1.18688 0.91908 0.88248 0.92013 0.88649 0.89537 0.85615 0.86102 0.86372 0.86295 0.86113 0.93549 0.93821 0.95537 0.96071 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.60 10.53 -39.25 -0.41 -5.02 16 3 C 0.43 6.76 7.24 36.00 0.26 7.02 16 4 O -0.48 -9.38 16.26 -25.46 -0.41 -9.79 16 5 C 0.11 1.61 2.61 -27.89 -0.07 1.53 16 6 H 0.10 1.31 7.79 -51.92 -0.40 0.91 16 7 C -0.07 -0.82 5.04 -27.88 -0.14 -0.96 16 8 C -0.08 -1.02 4.97 -104.62 -0.52 -1.54 16 9 C -0.09 -1.24 9.40 -39.58 -0.37 -1.61 16 10 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 11 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 12 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 13 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 14 O -0.35 -6.74 9.02 -55.14 -0.50 -7.23 16 15 C 0.07 1.57 5.68 37.16 0.21 1.78 16 16 C -0.01 -0.13 4.41 -27.88 -0.12 -0.26 16 17 C -0.52 -15.32 9.66 -34.44 -0.33 -15.66 16 18 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 21 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 25 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.10 0.89 8.06 -51.93 -0.42 0.47 16 29 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 30 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.05 0.95 8.09 -51.93 -0.42 0.54 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.70 7.20 -51.94 -0.37 0.32 16 38 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -34.29 338.80 -7.63 -41.92 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -5.82 Total: -1.87 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.70 Total: -13.42 kcal Atomic # 7 Polarization: -28.12 SS G_CDS: 0.77 Total: -27.35 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -1.32 Total: -22.05 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.29 -7.63 -41.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.346 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds