Wall clock time and date at job start Mon Mar 30 2020 23:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34228 * 117.00563 * 2 1 4 4 O 1.20826 * 119.99356 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00421 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.47204 * 55.00155 * 5 3 2 7 7 C 1.52995 * 109.47090 * 295.00188 * 5 3 2 8 8 C 1.50707 * 109.47301 * 174.99821 * 7 5 3 9 9 C 1.38238 * 119.99792 * 90.00016 * 8 7 5 10 10 C 1.38235 * 119.99712 * 179.97438 * 9 8 7 11 11 C 1.38234 * 120.00220 * 359.97124 * 10 9 8 12 12 C 1.38233 * 120.00037 * 0.28719 * 11 10 9 13 13 C 1.38234 * 120.00179 * 269.97953 * 8 7 5 14 14 O 1.42904 * 109.47156 * 174.99930 * 5 3 2 15 15 C 1.42896 * 113.99976 * 269.99963 * 14 5 3 16 16 C 1.53005 * 109.46945 * 179.97438 * 15 14 5 17 17 C 1.50695 * 109.47035 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00310 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00104 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00465 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99730 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47033 * 90.00389 * 21 19 17 23 23 H 1.48508 * 109.47106 * 209.99960 * 21 19 17 24 24 H 1.48490 * 109.47300 * 330.00190 * 21 19 17 25 25 H 1.09010 * 109.47177 * 59.99682 * 1 2 3 26 26 H 1.09003 * 109.47196 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47274 * 300.00411 * 1 2 3 28 28 H 1.09005 * 109.47610 * 55.00124 * 7 5 3 29 29 H 1.09000 * 109.47256 * 294.99466 * 7 5 3 30 30 H 1.08005 * 120.00068 * 359.97438 * 9 8 7 31 31 H 1.07999 * 119.99770 * 179.97438 * 10 9 8 32 32 H 1.08002 * 119.99744 * 180.02562 * 11 10 9 33 33 H 1.07998 * 120.00395 * 179.72811 * 12 11 10 34 34 H 1.07999 * 119.99968 * 359.97438 * 13 8 7 35 35 H 1.09003 * 109.47140 * 300.00146 * 15 14 5 36 36 H 1.08999 * 109.47100 * 59.99870 * 15 14 5 37 37 H 1.08989 * 109.47224 * 300.00135 * 16 15 14 38 38 H 1.09004 * 109.46870 * 60.00565 * 16 15 14 39 39 H 0.96994 * 120.00560 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9597 0.7053 -0.8427 7 6 4.1080 0.6923 1.3064 8 6 5.6138 0.6580 1.2551 9 6 6.3455 1.7414 1.7043 10 6 7.7267 1.7097 1.6578 11 6 8.3762 0.5945 1.1626 12 6 7.6444 -0.4868 0.7084 13 6 6.2633 -0.4569 0.7593 14 8 3.9718 2.6400 -0.1179 15 6 4.1421 3.0819 -1.4661 16 6 4.5737 4.5498 -1.4710 17 6 4.7540 5.0157 -2.8927 18 1 4.5779 4.3333 -3.7111 19 6 5.1437 6.3132 -3.1489 20 7 5.3006 6.7200 -4.3897 21 14 5.4476 7.4937 -1.7335 22 1 6.8707 7.4115 -1.3172 23 1 5.1388 8.8793 -2.1696 24 1 4.5751 7.1290 -0.5887 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.7259 -0.3199 1.4391 29 1 3.7871 1.3144 2.1419 30 1 5.8381 2.6126 2.0916 31 1 8.2984 2.5563 2.0083 32 1 9.4554 0.5696 1.1266 33 1 8.1517 -1.3564 0.3174 34 1 5.6916 -1.3037 0.4090 35 1 4.9065 2.4764 -1.9531 36 1 3.1997 2.9789 -2.0040 37 1 3.8091 5.1550 -0.9841 38 1 5.5161 4.6532 -0.9329 39 1 5.5744 7.6328 -4.5699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205631057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:53 Heat of formation + Delta-G solvation = -135.072422 kcal Electronic energy + Delta-G solvation = -21475.952116 eV Core-core repulsion = 18154.757932 eV Total energy + Delta-G solvation = -3321.194183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77188 -40.14907 -39.00768 -37.39888 -35.56333 -34.44700 -32.41696 -31.67490 -30.55109 -28.41621 -26.70251 -25.58166 -23.38514 -22.71194 -22.26176 -21.72677 -19.22901 -18.99913 -18.20944 -17.77900 -17.30058 -17.07239 -16.43183 -16.08722 -15.94303 -15.77080 -15.45651 -14.73806 -14.68993 -14.31246 -14.18473 -13.81372 -13.73533 -13.43490 -13.21075 -13.16352 -12.98474 -12.52925 -12.31167 -12.05465 -12.02479 -11.86285 -11.83252 -11.73974 -11.61511 -11.46248 -10.84321 -10.63737 -9.71216 -9.55388 -8.35766 -6.41492 0.46623 0.60861 1.04741 1.32745 1.35150 1.48533 1.55638 2.32306 2.60135 2.94890 2.99328 3.59601 3.82077 3.93204 4.04831 4.12002 4.25687 4.29513 4.29809 4.31269 4.32614 4.39509 4.49064 4.68613 4.71153 4.75103 4.86416 4.87354 5.06240 5.20415 5.25135 5.26725 5.35330 5.51555 5.65031 5.72067 5.78098 6.01349 6.17606 6.21785 6.63589 6.66369 7.23465 8.80338 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011008 B = 0.006109 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.887763 B = 4582.623467 C = 6512.724310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.438 3.562 4 O -0.529 6.529 5 C 0.101 3.899 6 H 0.115 0.885 7 C -0.060 4.060 8 C -0.093 4.093 9 C -0.116 4.116 10 C -0.137 4.137 11 C -0.129 4.129 12 C -0.128 4.128 13 C -0.119 4.119 14 O -0.364 6.364 15 C 0.089 3.911 16 C -0.001 4.001 17 C -0.536 4.536 18 H 0.039 0.961 19 C 0.015 3.985 20 N -0.943 5.943 21 Si 0.947 3.053 22 H -0.260 1.260 23 H -0.278 1.278 24 H -0.256 1.256 25 H 0.053 0.947 26 H 0.141 0.859 27 H 0.062 0.938 28 H 0.128 0.872 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.055 0.945 36 H 0.031 0.969 37 H 0.016 0.984 38 H 0.027 0.973 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 -19.437 14.619 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C 0.281 3.719 4 O -0.417 6.417 5 C 0.041 3.959 6 H 0.132 0.868 7 C -0.097 4.097 8 C -0.093 4.093 9 C -0.134 4.134 10 C -0.155 4.155 11 C -0.147 4.147 12 C -0.146 4.146 13 C -0.136 4.136 14 O -0.283 6.283 15 C 0.013 3.987 16 C -0.039 4.039 17 C -0.574 4.574 18 H 0.057 0.943 19 C -0.183 4.183 20 N -0.583 5.583 21 Si 0.770 3.230 22 H -0.184 1.184 23 H -0.204 1.204 24 H -0.180 1.180 25 H 0.072 0.928 26 H 0.159 0.841 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.100 0.900 30 H 0.131 0.869 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.770 -18.874 14.666 23.914 hybrid contribution -0.312 1.119 -0.307 1.202 sum -1.082 -17.755 14.358 22.860 Atomic orbital electron populations 1.23587 0.74878 1.05990 1.02281 1.86490 1.24915 1.31933 1.83603 1.25046 0.93358 0.81699 0.71815 1.90696 1.67589 1.37867 1.45554 1.21905 0.85034 0.85871 1.03072 0.86755 1.20646 0.91986 1.03201 0.93850 1.19705 0.94553 0.94865 1.00225 1.21226 0.94568 0.97949 0.99674 1.21383 0.94572 0.99061 1.00483 1.21461 1.00974 0.93699 0.98569 1.21456 0.94209 0.99278 0.99650 1.21368 0.95095 0.98103 0.99071 1.88015 1.86513 1.25778 1.27954 1.22412 0.98380 0.96560 0.81387 1.19346 0.96707 0.92194 0.95617 1.21168 1.46825 0.97539 0.91845 0.94280 1.25859 0.94162 0.99905 0.98416 1.70025 1.48587 1.18722 1.20979 0.85707 0.79858 0.77746 0.79715 1.18429 1.20365 1.18015 0.92789 0.84120 0.91949 0.85412 0.89966 0.86865 0.85518 0.84453 0.83706 0.83468 0.92680 0.95083 0.96590 0.95445 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.35 -8.16 10.53 -51.40 -0.54 -8.70 16 3 C 0.44 13.26 7.24 71.23 0.52 13.78 16 4 O -0.53 -20.65 16.26 28.38 0.46 -20.19 16 5 C 0.10 2.86 2.61 29.84 0.08 2.94 16 6 H 0.11 2.86 7.79 -2.38 -0.02 2.84 16 7 C -0.06 -1.29 5.04 29.85 0.15 -1.14 16 8 C -0.09 -2.18 4.97 -19.86 -0.10 -2.28 16 9 C -0.12 -3.08 9.40 22.27 0.21 -2.87 16 10 C -0.14 -3.34 10.05 22.27 0.22 -3.11 16 11 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 12 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 13 C -0.12 -2.31 9.70 22.27 0.22 -2.10 16 14 O -0.36 -13.83 9.02 -129.95 -1.17 -15.01 16 15 C 0.09 3.85 5.68 71.98 0.41 4.26 16 16 C 0.00 -0.06 4.41 29.85 0.13 0.07 16 17 C -0.54 -32.14 9.66 25.60 0.25 -31.89 16 18 H 0.04 2.52 7.99 -2.91 -0.02 2.50 16 19 C 0.01 0.87 5.47 84.65 0.46 1.34 16 20 N -0.94 -59.86 13.96 21.45 0.30 -59.56 16 21 Si 0.95 46.00 27.47 68.60 1.88 47.88 16 22 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.26 -12.10 6.54 99.48 0.65 -11.45 16 25 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 28 H 0.13 1.92 8.06 -2.38 -0.02 1.90 16 29 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 30 H 0.11 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.06 2.26 8.09 -2.39 -0.02 2.24 16 36 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 38 H 0.03 1.36 7.57 -2.38 -0.02 1.34 16 39 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -75.32 338.80 6.08 -69.24 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.96 Total: 10.39 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 4.19 Total: -24.05 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.30 Total: -59.56 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -1.25 Total: -43.90 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.88 Total: 47.88 kcal Total: -75.32 6.08 -69.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.834 kcal (2) G-P(sol) polarization free energy of solvation -75.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds