Wall clock time and date at job start Mon Mar 30 2020 23:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 H 1.08995 * 109.47473 * 59.99636 * 6 4 3 8 8 O 1.42903 * 109.47355 * 180.02562 * 6 4 3 9 9 C 1.42904 * 114.00000 * 209.99567 * 8 6 4 10 10 C 1.52998 * 109.47126 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.46968 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99990 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99621 * 180.02562 * 11 10 9 14 14 N 1.31507 * 120.00348 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99569 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47476 * 59.99871 * 15 13 11 17 17 H 1.48504 * 109.47057 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47080 * 299.99566 * 15 13 11 19 19 C 1.50705 * 109.46827 * 299.99637 * 6 4 3 20 20 C 1.38238 * 119.99940 * 279.72776 * 19 6 4 21 21 C 1.38233 * 119.99595 * 179.78836 * 20 19 6 22 22 C 1.38234 * 120.00086 * 0.44041 * 21 20 19 23 23 C 1.38231 * 120.00090 * 359.81121 * 22 21 20 24 24 C 1.38235 * 119.99743 * 99.99851 * 19 6 4 25 25 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 28 28 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 30 30 H 1.09001 * 109.46897 * 300.00014 * 9 8 6 31 31 H 1.09006 * 109.46816 * 59.99802 * 9 8 6 32 32 H 1.09003 * 109.46757 * 300.00167 * 10 9 8 33 33 H 1.08993 * 109.46764 * 59.99903 * 10 9 8 34 34 H 0.96996 * 120.00472 * 180.02562 * 14 13 11 35 35 H 1.07992 * 120.00274 * 359.97438 * 20 19 6 36 36 H 1.08000 * 119.99944 * 180.27686 * 21 20 19 37 37 H 1.08007 * 120.00104 * 179.83674 * 22 21 20 38 38 H 1.08004 * 119.99806 * 180.02562 * 23 22 21 39 39 H 1.08000 * 120.00497 * 359.97438 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 1 3.5843 3.4695 0.8911 8 8 5.3476 2.8628 0.0010 9 6 5.9872 3.9613 0.6542 10 6 7.5048 3.7768 0.5942 11 6 8.1793 4.9348 1.2835 12 1 7.5849 5.7236 1.7203 13 6 9.5551 4.9876 1.3556 14 7 10.2789 4.0278 0.8224 15 14 10.3911 6.4227 2.2107 16 1 9.9552 6.4758 3.6293 17 1 11.8642 6.2443 2.1513 18 1 10.0186 7.6892 1.5306 19 6 3.4565 3.6736 -1.2294 20 6 4.0842 3.4574 -2.4419 21 6 3.6557 4.1292 -3.5714 22 6 2.6055 5.0240 -3.4866 23 6 1.9812 5.2441 -2.2731 24 6 2.4068 4.5690 -1.1444 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 5.7137 4.8904 0.1542 31 1 5.6672 4.0011 1.6955 32 1 7.7779 2.8475 1.0944 33 1 7.8250 3.7366 -0.4469 34 1 11.2468 4.0647 0.8734 35 1 4.9074 2.7614 -2.5073 36 1 4.1432 3.9570 -4.5196 37 1 2.2724 5.5510 -4.3686 38 1 1.1604 5.9429 -2.2070 39 1 1.9190 4.7409 -0.1963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632835.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:43 Heat of formation + Delta-G solvation = -115.300924 kcal Electronic energy + Delta-G solvation = -21286.072843 eV Core-core repulsion = 17965.736016 eV Total energy + Delta-G solvation = -3320.336827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61461 -39.14181 -37.44330 -36.29604 -33.38316 -32.32304 -31.52402 -30.84617 -29.81503 -27.23877 -24.56288 -23.45113 -22.53805 -22.04379 -20.91470 -20.66484 -17.77804 -17.10850 -16.88037 -16.54437 -16.14167 -15.60089 -15.42221 -14.52874 -14.41905 -14.34815 -14.09568 -13.73041 -13.31229 -13.04521 -12.95808 -12.62305 -12.26617 -12.17381 -11.96501 -11.69386 -11.45791 -11.06334 -11.01095 -10.91244 -10.59770 -10.57304 -10.48919 -10.19701 -9.57812 -9.23652 -9.12867 -8.85603 -8.74550 -8.36586 -6.03004 -4.07307 1.29011 1.47028 2.28273 2.43998 3.32443 3.36738 3.38749 3.79390 4.25272 4.48985 4.60523 4.74845 4.77842 4.86475 4.96539 5.03211 5.10893 5.16569 5.21455 5.32921 5.49483 5.54436 5.58360 5.65375 5.75980 5.94632 6.07826 6.14810 6.20375 6.39995 6.46046 6.55780 6.60625 6.80438 7.02015 7.36224 7.71860 7.76931 7.87791 8.04368 8.32929 8.98641 9.56281 11.08507 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.004290 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.635734 B = 6525.318303 C = 7553.538672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.467 3.533 5 O -0.480 6.480 6 C 0.142 3.858 7 H 0.102 0.898 8 O -0.354 6.354 9 C 0.067 3.933 10 C 0.028 3.972 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.111 4.111 20 C -0.083 4.083 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.126 4.126 24 C -0.096 4.096 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.263 0.737 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.330 -2.253 -5.353 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.273 6.273 4 C 0.308 3.692 5 O -0.365 6.365 6 C 0.082 3.918 7 H 0.120 0.880 8 O -0.273 6.273 9 C -0.008 4.008 10 C -0.009 4.009 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.111 4.111 20 C -0.101 4.101 21 C -0.142 4.142 22 C -0.133 4.133 23 C -0.144 4.144 24 C -0.114 4.114 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.812 -2.799 -5.458 21.698 hybrid contribution 0.491 0.816 0.577 1.114 sum -20.321 -1.983 -4.881 20.993 Atomic orbital electron populations 1.21792 0.92634 1.02830 1.03506 1.23020 0.95239 0.80333 1.02696 1.86481 1.24139 1.32258 1.84407 1.23394 0.80654 0.92101 0.73098 1.90696 1.60234 1.42363 1.43183 1.20045 0.85816 0.88719 0.97262 0.88039 1.88100 1.12583 1.47920 1.78691 1.23137 0.97009 0.86583 0.94059 1.19065 0.85439 0.97983 0.98461 1.20974 0.91508 1.06927 1.36947 0.92536 1.24985 0.97407 0.96267 0.95533 1.69969 1.05838 1.32503 1.44486 0.86580 0.78318 0.82580 0.80059 1.20149 1.21173 1.20149 1.19994 0.97579 0.98759 0.94791 1.21119 0.98547 0.98793 0.91660 1.21162 0.97309 0.97167 0.98522 1.21180 0.96328 0.98073 0.97718 1.21053 1.00418 1.00214 0.92753 1.20976 0.95920 0.95616 0.98934 0.91478 0.90322 0.91479 0.91246 0.91181 0.93924 0.94135 0.95503 0.95541 0.92741 0.85141 0.85887 0.86182 0.85997 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.16 0.38 -0.74 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.35 -4.83 10.14 -39.24 -0.40 -5.23 16 4 C 0.47 7.75 7.31 36.00 0.26 8.02 16 5 O -0.48 -9.55 16.25 -25.48 -0.41 -9.96 16 6 C 0.14 2.33 2.84 -29.03 -0.08 2.25 16 7 H 0.10 1.43 7.65 -51.93 -0.40 1.04 16 8 O -0.35 -7.38 8.83 -55.19 -0.49 -7.86 16 9 C 0.07 1.47 5.68 37.16 0.21 1.68 16 10 C 0.03 0.75 5.34 -27.88 -0.15 0.60 16 11 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 15 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.11 -1.66 4.85 -104.62 -0.51 -2.17 16 20 C -0.08 -1.27 9.35 -39.58 -0.37 -1.64 16 21 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 22 C -0.11 -1.29 10.05 -39.59 -0.40 -1.69 16 23 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 24 C -0.10 -1.20 9.67 -39.58 -0.38 -1.58 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.13 2.17 7.77 -52.49 -0.41 1.76 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 39 H 0.12 1.27 8.04 -52.49 -0.42 0.85 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -33.36 342.48 -8.27 -41.63 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.84 Total: -2.19 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.01 Total: -11.81 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -1.30 Total: -23.06 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.36 -8.27 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632835.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.670 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds