Wall clock time and date at job start Mon Mar 30 2020 23:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47268 * 2 1 4 4 O 1.42905 * 109.46640 * 240.00411 * 2 1 3 5 5 C 1.42899 * 114.00168 * 90.00542 * 4 2 1 6 6 C 1.53000 * 109.47146 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.46866 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00158 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99758 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00209 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00108 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47102 * 59.99943 * 11 9 7 13 13 H 1.48497 * 109.47031 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46912 * 299.99928 * 11 9 7 15 15 C 1.50696 * 109.47094 * 120.00458 * 2 1 3 16 16 O 1.20825 * 119.99897 * 114.99849 * 15 2 1 17 17 O 1.34227 * 119.99883 * 294.99597 * 15 2 1 18 18 C 1.45205 * 116.99929 * 180.02562 * 17 15 2 19 19 C 1.50701 * 109.46997 * 180.02562 * 18 17 15 20 20 C 1.38235 * 119.99808 * 89.99829 * 19 18 17 21 21 C 1.38243 * 119.99602 * 179.97438 * 20 19 18 22 22 C 1.38231 * 120.00070 * 0.07188 * 21 20 19 23 23 C 1.38234 * 119.99892 * 359.90902 * 22 21 20 24 24 C 1.38230 * 119.99865 * 269.97574 * 19 18 17 25 25 H 1.08997 * 109.47226 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46806 * 299.99851 * 1 2 3 27 27 H 1.09006 * 109.47206 * 59.99711 * 1 2 3 28 28 H 1.09003 * 109.46599 * 299.99330 * 5 4 2 29 29 H 1.08997 * 109.47161 * 59.99373 * 5 4 2 30 30 H 1.09003 * 109.46885 * 299.99230 * 6 5 4 31 31 H 1.08998 * 109.47597 * 59.99128 * 6 5 4 32 32 H 0.97002 * 120.00484 * 179.97438 * 10 9 7 33 33 H 1.08993 * 109.47592 * 59.99660 * 18 17 15 34 34 H 1.09001 * 109.46728 * 299.99506 * 18 17 15 35 35 H 1.08000 * 120.00616 * 359.70324 * 20 19 18 36 36 H 1.08001 * 119.99556 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.99633 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.99751 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.00371 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2001 0.1830 -2.2941 6 6 2.7090 -0.6405 -3.4790 7 6 2.9128 0.2629 -4.6679 8 1 2.7002 1.3186 -4.5867 9 6 3.3706 -0.2585 -5.8593 10 7 3.6300 -1.5440 -5.9581 11 14 3.6226 0.8610 -7.3333 12 1 4.6183 1.9093 -6.9942 13 1 4.1166 0.0618 -8.4832 14 1 2.3326 1.5018 -7.6943 15 6 2.0323 -0.7105 1.2304 16 8 2.6506 -1.7429 1.1217 17 8 1.7929 -0.1964 2.4470 18 6 2.3070 -0.9340 3.5871 19 6 1.9436 -0.2110 4.8585 20 6 0.7544 -0.4991 5.5016 21 6 0.4213 0.1637 6.6681 22 6 1.2767 1.1157 7.1905 23 6 2.4661 1.4034 6.5475 24 6 2.7997 0.7399 5.3816 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.2538 0.6548 -2.5588 29 1 2.9320 0.9514 -2.0450 30 1 3.6554 -1.1119 -3.2140 31 1 1.9775 -1.4091 -3.7282 32 1 3.9518 -1.9110 -6.7964 33 1 3.3915 -1.0121 3.5104 34 1 1.8708 -1.9329 3.6003 35 1 0.0835 -1.2389 5.0905 36 1 -0.5080 -0.0611 7.1704 37 1 1.0162 1.6338 8.1016 38 1 3.1346 2.1469 6.9559 39 1 3.7288 0.9650 4.8791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205649101.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:59 Heat of formation + Delta-G solvation = -117.125892 kcal Electronic energy + Delta-G solvation = -20359.403693 eV Core-core repulsion = 17038.987730 eV Total energy + Delta-G solvation = -3320.415964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57913 -39.42502 -37.70955 -36.23731 -33.38826 -32.57262 -31.50818 -31.26017 -29.48007 -26.97926 -25.03039 -24.03317 -22.94250 -21.67708 -20.96924 -20.75691 -17.60526 -17.44577 -16.81322 -16.61064 -16.23674 -15.59247 -15.37846 -15.14731 -14.73149 -14.50248 -13.92484 -13.76535 -13.33143 -13.21071 -12.86888 -12.68092 -12.46813 -12.27188 -12.11060 -11.62120 -11.44038 -11.43020 -11.03584 -10.91897 -10.73475 -10.54422 -10.42276 -10.13635 -9.55380 -9.27128 -9.24018 -9.22068 -9.02910 -8.36715 -6.03188 -4.07725 0.83034 1.05317 2.29426 2.49907 3.32053 3.36417 3.38299 3.49284 4.23033 4.35734 4.45996 4.52510 4.64034 4.76729 4.82839 4.90677 5.02176 5.10054 5.15021 5.22530 5.29459 5.32516 5.59380 5.66462 5.68220 5.76534 6.06939 6.09070 6.14629 6.16655 6.21904 6.23152 6.37004 6.61373 6.81134 7.39503 7.72184 7.77134 7.88760 8.05773 8.32766 8.98528 9.55899 11.08291 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042814 B = 0.002520 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.832850 B =11108.140892 C =11178.757079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 H 0.094 0.906 4 O -0.363 6.363 5 C 0.067 3.933 6 C 0.026 3.974 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.059 3.941 10 N -0.890 5.890 11 Si 0.898 3.102 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.460 3.540 16 O -0.482 6.482 17 O -0.353 6.353 18 C 0.107 3.893 19 C -0.094 4.094 20 C -0.095 4.095 21 C -0.124 4.124 22 C -0.112 4.112 23 C -0.124 4.124 24 C -0.095 4.095 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.263 0.737 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 5.765 25.908 27.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.038 3.962 3 H 0.112 0.888 4 O -0.282 6.282 5 C -0.008 4.008 6 C -0.011 4.011 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.143 4.143 10 N -0.528 5.528 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.301 3.699 16 O -0.367 6.367 17 O -0.271 6.271 18 C 0.033 3.967 19 C -0.094 4.094 20 C -0.113 4.113 21 C -0.142 4.142 22 C -0.130 4.130 23 C -0.142 4.142 24 C -0.113 4.113 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.111 5.081 25.755 26.953 hybrid contribution 0.233 0.698 -0.771 1.066 sum -5.878 5.780 24.984 26.309 Atomic orbital electron populations 1.22208 0.93027 1.03718 1.03478 1.21321 0.95221 0.95811 0.83842 0.88842 1.88100 1.86147 1.35400 1.18579 1.23106 0.98513 0.93676 0.85515 1.19076 0.97328 0.95605 0.89116 1.20982 1.45313 0.94491 0.95618 0.92520 1.25003 0.95312 0.95114 0.98864 1.69977 1.44723 1.11681 1.26412 0.86568 0.78569 0.80457 0.81860 1.20161 1.21185 1.20151 1.23808 0.77285 0.84356 0.84442 1.90693 1.36298 1.23053 1.86637 1.86552 1.72792 1.53102 1.14659 1.21793 0.99778 0.94314 0.80788 1.19548 0.95888 0.98648 0.95346 1.21126 0.95491 0.99446 0.95246 1.21169 0.99871 0.96864 0.96306 1.21241 0.94410 0.97529 0.99817 1.21174 0.97240 1.00034 0.95723 1.21138 0.99547 0.94759 0.95847 0.91321 0.90838 0.90442 0.93999 0.94230 0.95535 0.95527 0.92730 0.90162 0.90194 0.85682 0.85733 0.85896 0.85712 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.50 37.16 0.35 -1.79 16 2 C 0.10 1.55 3.24 -27.88 -0.09 1.46 16 3 H 0.09 1.28 7.79 -51.93 -0.40 0.87 16 4 O -0.36 -7.60 9.53 -55.14 -0.53 -8.12 16 5 C 0.07 1.45 5.69 37.16 0.21 1.66 16 6 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 7 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 11 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.46 7.45 7.29 36.00 0.26 7.71 16 16 O -0.48 -9.52 16.26 -25.46 -0.41 -9.93 16 17 O -0.35 -4.71 10.20 -39.25 -0.40 -5.11 16 18 C 0.11 1.20 5.59 36.01 0.20 1.40 16 19 C -0.09 -0.92 5.52 -104.63 -0.58 -1.50 16 20 C -0.10 -0.82 9.70 -39.58 -0.38 -1.21 16 21 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 22 C -0.11 -0.79 10.05 -39.59 -0.40 -1.19 16 23 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 24 C -0.09 -0.84 9.70 -39.59 -0.38 -1.23 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.96 7.87 -51.93 -0.41 0.55 16 28 H 0.04 0.83 7.87 -51.93 -0.41 0.42 16 29 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -33.68 343.08 -8.44 -42.13 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -5.83 Total: -3.86 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.16 Total: -10.43 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.74 Total: -26.38 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -1.34 Total: -23.17 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.68 -8.44 -42.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649101.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.000 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds