Wall clock time and date at job start Mon Mar 30 2020 23:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47268 * 2 1 4 4 O 1.42905 * 109.46640 * 240.00411 * 2 1 3 5 5 C 1.42899 * 114.00168 * 90.00542 * 4 2 1 6 6 C 1.53000 * 109.47146 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.46866 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00158 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99758 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00209 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00108 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47102 * 59.99943 * 11 9 7 13 13 H 1.48497 * 109.47031 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46912 * 299.99928 * 11 9 7 15 15 C 1.50696 * 109.47094 * 120.00458 * 2 1 3 16 16 O 1.20825 * 119.99897 * 114.99849 * 15 2 1 17 17 O 1.34227 * 119.99883 * 294.99597 * 15 2 1 18 18 C 1.45205 * 116.99929 * 180.02562 * 17 15 2 19 19 C 1.50701 * 109.46997 * 180.02562 * 18 17 15 20 20 C 1.38235 * 119.99808 * 89.99829 * 19 18 17 21 21 C 1.38243 * 119.99602 * 179.97438 * 20 19 18 22 22 C 1.38231 * 120.00070 * 0.07188 * 21 20 19 23 23 C 1.38234 * 119.99892 * 359.90902 * 22 21 20 24 24 C 1.38230 * 119.99865 * 269.97574 * 19 18 17 25 25 H 1.08997 * 109.47226 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46806 * 299.99851 * 1 2 3 27 27 H 1.09006 * 109.47206 * 59.99711 * 1 2 3 28 28 H 1.09003 * 109.46599 * 299.99330 * 5 4 2 29 29 H 1.08997 * 109.47161 * 59.99373 * 5 4 2 30 30 H 1.09003 * 109.46885 * 299.99230 * 6 5 4 31 31 H 1.08998 * 109.47597 * 59.99128 * 6 5 4 32 32 H 0.97002 * 120.00484 * 179.97438 * 10 9 7 33 33 H 1.08993 * 109.47592 * 59.99660 * 18 17 15 34 34 H 1.09001 * 109.46728 * 299.99506 * 18 17 15 35 35 H 1.08000 * 120.00616 * 359.70324 * 20 19 18 36 36 H 1.08001 * 119.99556 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.99633 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.99751 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.00371 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2001 0.1830 -2.2941 6 6 2.7090 -0.6405 -3.4790 7 6 2.9128 0.2629 -4.6679 8 1 2.7002 1.3186 -4.5867 9 6 3.3706 -0.2585 -5.8593 10 7 3.6300 -1.5440 -5.9581 11 14 3.6226 0.8610 -7.3333 12 1 4.6183 1.9093 -6.9942 13 1 4.1166 0.0618 -8.4832 14 1 2.3326 1.5018 -7.6943 15 6 2.0323 -0.7105 1.2304 16 8 2.6506 -1.7429 1.1217 17 8 1.7929 -0.1964 2.4470 18 6 2.3070 -0.9340 3.5871 19 6 1.9436 -0.2110 4.8585 20 6 0.7544 -0.4991 5.5016 21 6 0.4213 0.1637 6.6681 22 6 1.2767 1.1157 7.1905 23 6 2.4661 1.4034 6.5475 24 6 2.7997 0.7399 5.3816 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.2538 0.6548 -2.5588 29 1 2.9320 0.9514 -2.0450 30 1 3.6554 -1.1119 -3.2140 31 1 1.9775 -1.4091 -3.7282 32 1 3.9518 -1.9110 -6.7964 33 1 3.3915 -1.0121 3.5104 34 1 1.8708 -1.9329 3.6003 35 1 0.0835 -1.2389 5.0905 36 1 -0.5080 -0.0611 7.1704 37 1 1.0162 1.6338 8.1016 38 1 3.1346 2.1469 6.9559 39 1 3.7288 0.9650 4.8791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205649101.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:58 Heat of formation + Delta-G solvation = -135.807440 kcal Electronic energy + Delta-G solvation = -20360.213786 eV Core-core repulsion = 17038.987730 eV Total energy + Delta-G solvation = -3321.226056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.78128 -40.13892 -39.14380 -37.50884 -35.45401 -33.54535 -32.81257 -31.84489 -31.31094 -27.83023 -26.84713 -25.39335 -23.53463 -22.94220 -22.39638 -21.95238 -18.88680 -18.77003 -18.23534 -17.73181 -17.45024 -16.95645 -16.54271 -16.43640 -16.07552 -15.86420 -15.01959 -14.55388 -14.33688 -14.26526 -14.24671 -13.97011 -13.83466 -13.46672 -13.21713 -13.16890 -12.88778 -12.67119 -12.38144 -12.21731 -12.09993 -12.06932 -11.74109 -11.54284 -11.47205 -11.34593 -10.72695 -10.49725 -9.86731 -9.84119 -8.22880 -6.36934 0.15030 0.45871 1.01815 1.38438 1.43392 1.46662 1.54727 2.39071 2.79786 3.01262 3.11000 3.47929 3.75116 3.77082 3.87303 3.95940 4.10280 4.20012 4.25080 4.30438 4.38335 4.42417 4.58829 4.68284 4.69073 4.77214 4.89049 4.98646 5.11358 5.12985 5.20822 5.35611 5.50971 5.55484 5.57141 5.57993 5.70130 6.03974 6.05617 6.23387 6.64445 6.79355 7.33159 8.90198 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042814 B = 0.002520 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.832850 B =11108.140892 C =11178.757079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.088 3.912 3 H 0.122 0.878 4 O -0.396 6.396 5 C 0.083 3.917 6 C 0.026 3.974 7 C -0.544 4.544 8 H 0.074 0.926 9 C -0.003 4.003 10 N -0.935 5.935 11 Si 0.978 3.022 12 H -0.263 1.263 13 H -0.285 1.285 14 H -0.261 1.261 15 C 0.466 3.534 16 O -0.528 6.528 17 O -0.343 6.343 18 C 0.104 3.896 19 C -0.113 4.113 20 C -0.106 4.106 21 C -0.128 4.128 22 C -0.111 4.111 23 C -0.129 4.129 24 C -0.109 4.109 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.054 0.946 30 H -0.012 1.012 31 H -0.006 1.006 32 H 0.265 0.735 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.520 8.491 27.108 29.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 H 0.139 0.861 4 O -0.316 6.316 5 C 0.008 3.992 6 C -0.011 4.011 7 C -0.581 4.581 8 H 0.092 0.908 9 C -0.201 4.201 10 N -0.574 5.574 11 Si 0.801 3.199 12 H -0.188 1.188 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.310 3.690 16 O -0.416 6.416 17 O -0.260 6.260 18 C 0.031 3.969 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.145 4.145 22 C -0.129 4.129 23 C -0.146 4.146 24 C -0.127 4.127 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.006 0.994 31 H 0.013 0.987 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.163 0.837 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.232 7.837 26.995 29.025 hybrid contribution 0.556 -0.171 -0.958 1.120 sum -6.676 7.666 26.038 27.952 Atomic orbital electron populations 1.22196 0.90437 1.03692 1.05339 1.21707 0.97135 0.96505 0.81731 0.86065 1.88023 1.86913 1.36678 1.19950 1.22714 0.99716 0.92510 0.84234 1.18949 0.94751 0.95523 0.91896 1.21436 1.45133 0.95413 0.96155 0.90768 1.26114 0.94708 0.96732 1.02591 1.70144 1.45745 1.14075 1.27455 0.85315 0.79227 0.78203 0.77163 1.18808 1.21074 1.18563 1.23939 0.76163 0.83551 0.85388 1.90678 1.38520 1.25073 1.87354 1.86545 1.72298 1.52871 1.14253 1.21974 0.99644 0.94602 0.80696 1.19514 0.97088 0.99776 0.94944 1.21315 0.95264 0.99928 0.95925 1.21488 1.00815 0.96460 0.95781 1.21627 0.93843 0.97037 1.00405 1.21476 0.97891 1.00109 0.95157 1.21311 0.99724 0.94943 0.96697 0.92334 0.87870 0.89594 0.91693 0.92804 0.99394 0.98731 0.92594 0.90453 0.90150 0.85047 0.83495 0.83292 0.83656 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 9.50 71.98 0.68 -3.10 16 2 C 0.09 2.69 3.24 29.85 0.10 2.79 16 3 H 0.12 3.03 7.79 -2.38 -0.02 3.01 16 4 O -0.40 -16.73 9.53 -129.95 -1.24 -17.97 16 5 C 0.08 3.59 5.69 71.98 0.41 4.00 16 6 C 0.03 1.46 5.34 29.85 0.16 1.62 16 7 C -0.54 -31.05 9.11 25.60 0.23 -30.82 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 10 N -0.93 -58.50 13.29 21.45 0.28 -58.21 16 11 Si 0.98 43.97 29.54 68.60 2.03 45.99 16 12 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 13 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 15 C 0.47 15.12 7.29 71.23 0.52 15.64 16 16 O -0.53 -21.58 16.26 28.39 0.46 -21.12 16 17 O -0.34 -8.96 10.20 -51.39 -0.52 -9.49 16 18 C 0.10 2.35 5.59 71.24 0.40 2.75 16 19 C -0.11 -2.15 5.52 -19.87 -0.11 -2.26 16 20 C -0.11 -1.72 9.70 22.27 0.22 -1.50 16 21 C -0.13 -1.60 10.05 22.27 0.22 -1.38 16 22 C -0.11 -1.27 10.05 22.27 0.22 -1.05 16 23 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 24 C -0.11 -1.83 9.70 22.27 0.22 -1.61 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.09 1.91 7.87 -2.38 -0.02 1.89 16 28 H 0.06 2.48 7.87 -2.39 -0.02 2.46 16 29 H 0.05 2.14 8.08 -2.39 -0.02 2.12 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 34 H 0.08 1.79 8.08 -2.39 -0.02 1.77 16 35 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 37 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 38 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -75.08 343.08 5.99 -69.09 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.02 Total: 7.79 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 3.96 Total: -16.09 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.28 Total: -58.21 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -1.30 Total: -48.58 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -75.08 5.99 -69.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649101.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.714 kcal (2) G-P(sol) polarization free energy of solvation -75.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds