Wall clock time and date at job start Mon Mar 30 2020 23:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99931 * 2 1 4 4 O 1.20824 * 120.00133 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99932 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47286 * 54.99505 * 5 3 2 7 7 O 1.42893 * 109.47134 * 174.99789 * 5 3 2 8 8 C 1.42898 * 114.00136 * 269.99770 * 7 5 3 9 9 C 1.53002 * 109.47438 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.47260 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46944 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00285 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99862 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00119 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00115 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47253 * 89.99493 * 15 13 11 17 17 H 1.48496 * 109.47238 * 209.99535 * 15 13 11 18 18 H 1.48499 * 109.46821 * 329.99779 * 15 13 11 19 19 C 1.50703 * 109.46901 * 295.00101 * 5 3 2 20 20 C 1.38235 * 120.00292 * 100.00039 * 19 5 3 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 5 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 279.97332 * 19 5 3 25 25 H 1.09000 * 109.47360 * 300.00526 * 1 2 3 26 26 H 1.09001 * 109.47058 * 60.00522 * 1 2 3 27 27 H 1.09001 * 109.46910 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47316 * 300.00251 * 8 7 5 29 29 H 1.09006 * 109.47268 * 60.00204 * 8 7 5 30 30 H 1.08998 * 109.46850 * 300.00424 * 9 8 7 31 31 H 1.09001 * 109.46957 * 60.00068 * 9 8 7 32 32 H 1.09002 * 109.46900 * 299.99927 * 10 9 8 33 33 H 1.08997 * 109.46996 * 60.00455 * 10 9 8 34 34 H 0.97003 * 120.00034 * 180.02562 * 14 13 11 35 35 H 1.08001 * 119.99730 * 359.97438 * 20 19 5 36 36 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 38 38 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.00455 * 0.02562 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9604 0.7050 -0.8409 7 8 3.9718 2.6400 -0.1170 8 6 4.1433 3.0814 -1.4653 9 6 4.5749 4.5493 -1.4705 10 6 4.7578 5.0220 -2.9141 11 6 5.1835 6.4676 -2.9191 12 1 5.3104 6.9965 -1.9860 13 6 5.4099 7.1154 -4.1150 14 7 5.2549 6.4715 -5.2513 15 14 5.9369 8.9075 -4.1214 16 1 7.4192 8.9878 -4.0825 17 1 5.4377 9.5659 -5.3553 18 1 5.3727 9.5935 -2.9313 19 6 4.0989 0.7018 1.2886 20 6 4.5935 -0.5887 1.3187 21 6 5.0824 -1.1141 2.5001 22 6 5.0776 -0.3489 3.6512 23 6 4.5843 0.9421 3.6209 24 6 4.0932 1.4668 2.4399 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.9080 2.4757 -1.9514 29 1 3.2013 2.9782 -2.0040 30 1 3.8097 5.1546 -0.9845 31 1 5.5167 4.6530 -0.9317 32 1 5.5228 4.4166 -3.4004 33 1 3.8157 4.9184 -3.4524 34 1 5.4145 6.9272 -6.0926 35 1 4.5979 -1.1864 0.4191 36 1 5.4684 -2.1225 2.5237 37 1 5.4554 -0.7609 4.5753 38 1 4.5801 1.5400 4.5203 39 1 3.7068 2.4751 2.4165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205663380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:51 Heat of formation + Delta-G solvation = -116.809905 kcal Electronic energy + Delta-G solvation = -21006.850297 eV Core-core repulsion = 17686.448036 eV Total energy + Delta-G solvation = -3320.402261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78363 -39.25265 -37.79814 -36.26915 -34.02921 -32.51484 -31.24429 -30.99170 -28.57482 -27.08067 -26.04665 -23.18195 -22.60990 -22.30645 -20.86167 -20.16840 -18.02172 -17.21749 -17.12073 -16.57260 -16.27693 -15.87293 -15.35777 -14.94592 -14.58991 -14.38604 -14.16302 -13.67567 -13.49204 -13.26698 -12.82525 -12.52085 -12.36191 -12.16353 -11.95274 -11.59959 -11.30387 -11.12475 -10.98521 -10.89118 -10.73882 -10.55451 -10.46839 -9.89096 -9.47321 -9.38299 -9.11131 -9.05334 -8.93104 -8.34145 -5.99494 -4.01551 1.07737 1.27277 2.12949 2.50279 3.34018 3.39804 3.43936 3.51600 3.88561 4.44993 4.49029 4.71682 4.72596 4.87397 4.96341 4.97137 4.99826 5.05803 5.34210 5.36649 5.37494 5.45401 5.66232 5.72343 5.75403 5.90433 6.13148 6.24458 6.27286 6.36041 6.37058 6.63888 6.67810 6.81456 7.08626 7.26483 7.66447 7.71934 7.79116 7.99868 8.42529 9.04814 9.62409 11.12120 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.003530 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.904647 B = 7929.902955 C = 8770.037243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.439 3.561 4 O -0.482 6.482 5 C 0.144 3.856 6 H 0.106 0.894 7 O -0.347 6.347 8 C 0.057 3.943 9 C -0.105 4.105 10 C 0.024 3.976 11 C -0.519 4.519 12 H 0.057 0.943 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.088 4.088 20 C -0.094 4.094 21 C -0.125 4.125 22 C -0.113 4.113 23 C -0.124 4.124 24 C -0.084 4.084 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.260 0.740 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 -18.836 15.013 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.279 3.721 4 O -0.367 6.367 5 C 0.084 3.916 6 H 0.124 0.876 7 O -0.266 6.266 8 C -0.019 4.019 9 C -0.143 4.143 10 C -0.013 4.013 11 C -0.557 4.557 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.088 4.088 20 C -0.113 4.113 21 C -0.142 4.142 22 C -0.131 4.131 23 C -0.142 4.142 24 C -0.102 4.102 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.119 0.881 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.660 -18.363 14.968 24.144 hybrid contribution -0.049 0.922 -0.424 1.016 sum -4.709 -17.441 14.544 23.192 Atomic orbital electron populations 1.23257 0.76508 1.03520 1.02641 1.86507 1.23299 1.33469 1.84241 1.24600 0.92642 0.81759 0.73068 1.90710 1.66434 1.36203 1.43317 1.20195 0.86005 0.87433 0.98004 0.87649 1.88092 1.86236 1.22820 1.29415 1.23068 0.99556 0.98540 0.80732 1.21649 1.00699 0.90321 1.01617 1.19051 0.97199 0.96165 0.88905 1.21210 1.45749 0.96261 0.92473 0.92476 1.25024 0.95577 0.98277 0.95618 1.69966 1.49616 1.36713 0.97306 0.86557 0.78791 0.84968 0.77490 1.20634 1.21230 1.19805 1.19298 1.01573 0.94766 0.93205 1.20968 0.97389 0.94170 0.98723 1.21075 1.00480 1.00037 0.92657 1.21221 0.99065 0.94480 0.98336 1.21180 0.99245 0.95798 0.98000 1.21128 0.97384 0.99974 0.91729 0.91979 0.91813 0.88141 0.93048 0.93341 0.92260 0.92357 0.96418 0.96424 0.92991 0.85486 0.85716 0.85997 0.85766 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.47 10.55 -39.26 -0.41 -4.89 16 3 C 0.44 6.60 7.22 36.01 0.26 6.86 16 4 O -0.48 -8.84 16.26 -25.46 -0.41 -9.25 16 5 C 0.14 2.03 2.83 -29.03 -0.08 1.95 16 6 H 0.11 1.24 7.65 -51.93 -0.40 0.84 16 7 O -0.35 -6.05 8.85 -55.14 -0.49 -6.54 16 8 C 0.06 1.05 5.74 37.16 0.21 1.26 16 9 C -0.11 -2.31 5.52 -26.73 -0.15 -2.46 16 10 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 11 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 12 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 15 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 19 C -0.09 -1.11 4.95 -104.62 -0.52 -1.63 16 20 C -0.09 -0.97 9.67 -39.59 -0.38 -1.35 16 21 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 22 C -0.11 -1.02 10.05 -39.58 -0.40 -1.42 16 23 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 24 C -0.08 -1.07 9.35 -39.58 -0.37 -1.44 16 25 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 26 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 35 H 0.13 1.04 8.04 -52.49 -0.42 0.62 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 1.78 7.78 -52.49 -0.41 1.38 16 LS Contribution 342.22 15.07 5.16 5.16 Total: -1.00 -33.64 342.22 -7.99 -41.63 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.84 Total: -3.22 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -1.70 Total: -13.37 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.32 Total: -20.68 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.64 -7.99 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.183 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds