Wall clock time and date at job start Mon Mar 30 2020 23:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99931 * 2 1 4 4 O 1.20824 * 120.00133 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99932 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47286 * 54.99505 * 5 3 2 7 7 O 1.42893 * 109.47134 * 174.99789 * 5 3 2 8 8 C 1.42898 * 114.00136 * 269.99770 * 7 5 3 9 9 C 1.53002 * 109.47438 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.47260 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46944 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00285 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99862 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00119 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00115 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47253 * 89.99493 * 15 13 11 17 17 H 1.48496 * 109.47238 * 209.99535 * 15 13 11 18 18 H 1.48499 * 109.46821 * 329.99779 * 15 13 11 19 19 C 1.50703 * 109.46901 * 295.00101 * 5 3 2 20 20 C 1.38235 * 120.00292 * 100.00039 * 19 5 3 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 5 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 279.97332 * 19 5 3 25 25 H 1.09000 * 109.47360 * 300.00526 * 1 2 3 26 26 H 1.09001 * 109.47058 * 60.00522 * 1 2 3 27 27 H 1.09001 * 109.46910 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47316 * 300.00251 * 8 7 5 29 29 H 1.09006 * 109.47268 * 60.00204 * 8 7 5 30 30 H 1.08998 * 109.46850 * 300.00424 * 9 8 7 31 31 H 1.09001 * 109.46957 * 60.00068 * 9 8 7 32 32 H 1.09002 * 109.46900 * 299.99927 * 10 9 8 33 33 H 1.08997 * 109.46996 * 60.00455 * 10 9 8 34 34 H 0.97003 * 120.00034 * 180.02562 * 14 13 11 35 35 H 1.08001 * 119.99730 * 359.97438 * 20 19 5 36 36 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 38 38 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.00455 * 0.02562 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9604 0.7050 -0.8409 7 8 3.9718 2.6400 -0.1170 8 6 4.1433 3.0814 -1.4653 9 6 4.5749 4.5493 -1.4705 10 6 4.7578 5.0220 -2.9141 11 6 5.1835 6.4676 -2.9191 12 1 5.3104 6.9965 -1.9860 13 6 5.4099 7.1154 -4.1150 14 7 5.2549 6.4715 -5.2513 15 14 5.9369 8.9075 -4.1214 16 1 7.4192 8.9878 -4.0825 17 1 5.4377 9.5659 -5.3553 18 1 5.3727 9.5935 -2.9313 19 6 4.0989 0.7018 1.2886 20 6 4.5935 -0.5887 1.3187 21 6 5.0824 -1.1141 2.5001 22 6 5.0776 -0.3489 3.6512 23 6 4.5843 0.9421 3.6209 24 6 4.0932 1.4668 2.4399 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.9080 2.4757 -1.9514 29 1 3.2013 2.9782 -2.0040 30 1 3.8097 5.1546 -0.9845 31 1 5.5167 4.6530 -0.9317 32 1 5.5228 4.4166 -3.4004 33 1 3.8157 4.9184 -3.4524 34 1 5.4145 6.9272 -6.0926 35 1 4.5979 -1.1864 0.4191 36 1 5.4684 -2.1225 2.5237 37 1 5.4554 -0.7609 4.5753 38 1 4.5801 1.5400 4.5203 39 1 3.7068 2.4751 2.4165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205663380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:51 Heat of formation + Delta-G solvation = -135.473354 kcal Electronic energy + Delta-G solvation = -21007.659605 eV Core-core repulsion = 17686.448036 eV Total energy + Delta-G solvation = -3321.211569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.90294 -40.14487 -39.00932 -37.46432 -35.97087 -34.00315 -32.78475 -31.80598 -29.51586 -28.73390 -27.26989 -24.98321 -23.49663 -23.26805 -22.21711 -21.71105 -19.10412 -18.68890 -18.25335 -18.07119 -17.47233 -17.10393 -16.48550 -16.38364 -16.24548 -15.50831 -15.15967 -14.86816 -14.48706 -14.26877 -14.22672 -13.93707 -13.76062 -13.58061 -13.25027 -12.98495 -12.83174 -12.50808 -12.27340 -12.17033 -12.14175 -11.89449 -11.88634 -11.66513 -11.53442 -11.24553 -10.78139 -10.57543 -9.83263 -9.77838 -8.22746 -6.33803 0.25575 0.49170 0.98366 1.39505 1.41349 1.47206 1.52866 2.37044 2.48903 2.92749 3.10637 3.47799 3.71635 3.76544 4.07296 4.10343 4.16311 4.22692 4.25182 4.26688 4.31654 4.49865 4.61142 4.63856 4.65413 4.82417 4.84991 4.98079 5.11209 5.14794 5.18847 5.44711 5.52487 5.54817 5.60593 5.65888 5.79630 5.89811 6.06997 6.21796 6.58873 6.81009 7.35236 8.89404 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.003530 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.904647 B = 7929.902955 C = 8770.037243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.442 3.558 4 O -0.526 6.526 5 C 0.139 3.861 6 H 0.131 0.869 7 O -0.363 6.363 8 C 0.068 3.932 9 C -0.094 4.094 10 C 0.029 3.971 11 C -0.547 4.547 12 H 0.058 0.942 13 C 0.001 3.999 14 N -0.931 5.931 15 Si 0.967 3.033 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.266 1.266 19 C -0.107 4.107 20 C -0.097 4.097 21 C -0.121 4.121 22 C -0.109 4.109 23 C -0.131 4.131 24 C -0.111 4.111 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.140 0.860 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.004 0.996 33 H -0.007 1.007 34 H 0.265 0.735 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.139 0.861 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.549 -20.486 16.181 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.285 3.715 4 O -0.414 6.414 5 C 0.079 3.921 6 H 0.148 0.852 7 O -0.281 6.281 8 C -0.007 4.007 9 C -0.132 4.132 10 C -0.008 4.008 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.792 3.208 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.190 1.190 19 C -0.108 4.108 20 C -0.115 4.115 21 C -0.138 4.138 22 C -0.127 4.127 23 C -0.149 4.149 24 C -0.130 4.130 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.158 0.842 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.022 0.978 33 H 0.012 0.988 34 H 0.074 0.926 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.170 0.830 38 H 0.157 0.843 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.753 -20.048 16.153 26.018 hybrid contribution -0.379 1.302 -0.723 1.537 sum -4.132 -18.747 15.429 24.629 Atomic orbital electron populations 1.23592 0.74762 1.06017 1.02299 1.86493 1.24963 1.31867 1.83477 1.24831 0.93094 0.81797 0.71792 1.90689 1.67422 1.37678 1.45650 1.20480 0.85629 0.85842 1.00126 0.85151 1.88039 1.86604 1.25328 1.28167 1.22740 0.99613 0.96644 0.81746 1.21370 1.00578 0.92707 0.98510 1.18914 0.95268 0.95416 0.91214 1.21632 1.46293 0.97636 0.92882 0.92342 1.25973 0.95313 1.03304 0.95083 1.70085 1.50232 1.38809 0.98015 0.85412 0.78803 0.78826 0.77807 1.19414 1.20517 1.19041 1.19303 1.03277 0.96020 0.92168 1.21257 0.96655 0.93200 1.00342 1.21506 0.99141 1.01331 0.91872 1.21624 0.97708 0.93629 0.99759 1.21406 0.98979 0.96881 0.97628 1.21109 0.99211 0.99417 0.93220 0.92291 0.92314 0.84165 0.91099 0.94153 0.93475 0.91990 0.97794 0.98837 0.92603 0.83343 0.82489 0.82970 0.84319 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.67 16 2 O -0.35 -8.49 10.55 -51.44 -0.54 -9.03 16 3 C 0.44 13.47 7.22 71.24 0.51 13.98 16 4 O -0.53 -20.11 16.26 28.39 0.46 -19.65 16 5 C 0.14 3.90 2.83 29.10 0.08 3.98 16 6 H 0.13 2.92 7.65 -2.39 -0.02 2.90 16 7 O -0.36 -12.94 8.85 -129.95 -1.15 -14.09 16 8 C 0.07 2.59 5.74 71.98 0.41 3.00 16 9 C -0.09 -4.26 5.52 30.60 0.17 -4.10 16 10 C 0.03 1.59 4.97 29.85 0.15 1.74 16 11 C -0.55 -32.30 9.11 25.60 0.23 -32.07 16 12 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 13 C 0.00 0.07 5.46 84.65 0.46 0.53 16 14 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 15 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 C -0.11 -2.64 4.95 -19.87 -0.10 -2.74 16 20 C -0.10 -1.75 9.67 22.27 0.22 -1.53 16 21 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 22 C -0.11 -1.64 10.05 22.27 0.22 -1.42 16 23 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 24 C -0.11 -2.87 9.35 22.27 0.21 -2.66 16 25 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 26 H 0.06 1.13 8.13 -2.39 -0.02 1.12 16 27 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 2.38 8.08 -2.39 -0.02 2.36 16 29 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 33 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.15 1.95 8.04 -2.91 -0.02 1.93 16 36 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.11 3.14 7.78 -2.91 -0.02 3.12 16 Total: -1.00 -74.40 342.22 6.31 -68.09 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.02 Total: 7.97 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 4.22 Total: -23.47 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.28 Total: -57.08 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -1.23 Total: -42.78 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -74.40 6.31 -68.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.385 kcal (2) G-P(sol) polarization free energy of solvation -74.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds