Wall clock time and date at job start Mon Mar 30 2020 23:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00102 * 2 1 4 4 O 1.20819 * 119.99810 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99710 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47612 * 300.00315 * 5 3 2 7 7 C 1.53006 * 109.47184 * 60.00260 * 5 3 2 8 8 C 1.52999 * 109.47150 * 179.97438 * 5 3 2 9 9 O 1.42900 * 109.47586 * 175.00009 * 8 5 3 10 10 C 1.42893 * 113.99928 * 180.02562 * 9 8 5 11 11 H 1.08999 * 109.47700 * 329.99693 * 10 9 8 12 12 C 1.50703 * 109.47169 * 90.00495 * 10 9 8 13 13 H 1.07997 * 119.99502 * 239.99803 * 12 10 9 14 14 C 1.37875 * 120.00273 * 59.99389 * 12 10 9 15 15 N 1.31515 * 119.99682 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00066 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46759 * 60.00693 * 16 14 12 18 18 H 1.48494 * 109.47404 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47545 * 300.00366 * 16 14 12 20 20 C 1.50706 * 109.46826 * 210.00069 * 10 9 8 21 21 C 1.38237 * 120.00220 * 324.72558 * 20 10 9 22 22 C 1.38225 * 120.00136 * 179.78643 * 21 20 10 23 23 C 1.38241 * 120.00248 * 0.44729 * 22 21 20 24 24 C 1.38236 * 119.99719 * 359.80817 * 23 22 21 25 25 C 1.38235 * 119.99828 * 145.00506 * 20 10 9 26 26 H 1.08994 * 109.47017 * 299.99990 * 1 2 3 27 27 H 1.08999 * 109.46866 * 60.00142 * 1 2 3 28 28 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47002 * 299.99404 * 7 5 3 30 30 H 1.08993 * 109.46955 * 59.99842 * 7 5 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 7 5 3 32 32 H 1.09001 * 109.47317 * 295.00671 * 8 5 3 33 33 H 1.09007 * 109.46669 * 55.00329 * 8 5 3 34 34 H 0.97004 * 119.99759 * 180.02562 * 15 14 12 35 35 H 1.08000 * 119.99547 * 359.97438 * 21 20 10 36 36 H 1.07998 * 120.00401 * 180.27516 * 22 21 20 37 37 H 1.07997 * 120.00066 * 179.83473 * 23 22 21 38 38 H 1.07995 * 120.00482 * 180.02562 * 24 23 22 39 39 H 1.08000 * 120.00307 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9558 0.7808 0.8908 7 6 4.1139 0.5809 -1.2484 8 6 4.0003 2.7419 -0.0002 9 8 5.4223 2.8183 0.1178 10 6 5.9339 4.1524 0.1275 11 1 5.2796 4.7969 -0.4596 12 6 5.9946 4.6568 1.5464 13 1 5.4340 5.5347 1.8317 14 6 6.7656 3.9976 2.4801 15 7 7.4485 2.9288 2.1324 16 14 6.8413 4.6232 4.2385 17 1 5.4779 4.6121 4.8269 18 1 7.7331 3.7457 5.0382 19 1 7.3734 6.0095 4.2482 20 6 7.3177 4.1641 -0.4693 21 6 8.1697 3.0958 -0.2604 22 6 9.4373 3.1045 -0.8115 23 6 9.8564 4.1858 -1.5639 24 6 9.0064 5.2566 -1.7685 25 6 7.7371 5.2458 -1.2209 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.8048 -0.4644 -1.2483 30 1 3.7245 1.0749 -2.1385 31 1 5.2024 0.6383 -1.2482 32 1 3.6871 3.2130 -0.9319 33 1 3.5377 3.2580 0.8412 34 1 7.9907 2.4647 2.7894 35 1 7.8437 2.2529 0.3310 36 1 10.1013 2.2679 -0.6520 37 1 10.8478 4.1938 -1.9923 38 1 9.3336 6.1012 -2.3566 39 1 7.0730 6.0824 -1.3808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205944955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:34 Heat of formation + Delta-G solvation = -104.982735 kcal Electronic energy + Delta-G solvation = -21876.367585 eV Core-core repulsion = 18556.478188 eV Total energy + Delta-G solvation = -3319.889397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37733 -38.26183 -36.85361 -36.11954 -33.80233 -32.30870 -30.33221 -29.59006 -27.77140 -26.78006 -25.78021 -23.33155 -22.59841 -21.30699 -20.14957 -19.82892 -17.51731 -16.80089 -16.41826 -16.23058 -15.66988 -15.13184 -14.58718 -14.54360 -14.05249 -13.58140 -13.35732 -13.28686 -12.98295 -12.51325 -12.42200 -12.23795 -12.07535 -11.80271 -11.50862 -11.34891 -11.19821 -10.95170 -10.75235 -10.68753 -10.55404 -10.16563 -10.09697 -10.06687 -9.69376 -9.20729 -8.72944 -8.11240 -7.72116 -7.41319 -5.94655 -4.27731 2.39589 2.50065 2.65863 2.80315 3.27139 3.31186 3.34564 4.34031 4.78656 4.94403 5.07266 5.07900 5.13931 5.22935 5.30194 5.44725 5.56637 5.76359 5.84617 5.98131 6.06306 6.10758 6.16988 6.37256 6.41222 6.45853 6.56887 6.61594 6.64680 6.85690 6.95057 7.15243 7.32693 7.54676 7.65480 7.87255 7.90592 8.06128 8.10001 8.33505 8.53602 8.93688 9.47413 10.89410 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.005663 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.389584 B = 4943.241210 C = 6032.002568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.469 3.531 4 O -0.508 6.508 5 C -0.079 4.079 6 H 0.117 0.883 7 C -0.135 4.135 8 C 0.089 3.911 9 O -0.366 6.366 10 C 0.247 3.753 11 H 0.018 0.982 12 C -0.544 4.544 13 H 0.060 0.940 14 C 0.085 3.915 15 N -0.848 5.848 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C -0.040 4.040 21 C -0.044 4.044 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.130 4.130 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.262 0.738 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.608 -5.788 -5.466 9.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.313 3.687 4 O -0.395 6.395 5 C -0.098 4.098 6 H 0.135 0.865 7 C -0.192 4.192 8 C 0.011 3.989 9 O -0.286 6.286 10 C 0.192 3.808 11 H 0.036 0.964 12 C -0.580 4.580 13 H 0.078 0.922 14 C -0.121 4.121 15 N -0.483 5.483 16 Si 0.718 3.282 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.202 1.202 20 C -0.040 4.040 21 C -0.062 4.062 22 C -0.173 4.173 23 C -0.165 4.165 24 C -0.169 4.169 25 C -0.148 4.148 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.182 0.818 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.604 -5.790 -5.367 9.682 hybrid contribution -0.179 0.831 1.171 1.447 sum -5.783 -4.959 -4.196 8.697 Atomic orbital electron populations 1.23214 0.76996 1.03312 1.02417 1.86524 1.22911 1.33859 1.84331 1.23957 0.92166 0.81016 0.71602 1.90650 1.67314 1.36343 1.45204 1.20950 0.85463 1.00337 1.03100 0.86507 1.21680 1.03392 0.99352 0.94824 1.21799 0.85988 0.91357 0.99731 1.87939 1.15848 1.30296 1.94478 1.18537 0.87636 0.80498 0.94177 0.96367 1.21415 1.29425 1.13208 0.93983 0.92224 1.24963 0.93934 0.94465 0.98703 1.69799 1.27696 1.17724 1.33117 0.86694 0.78090 0.78951 0.84488 1.20136 1.21041 1.20192 1.19982 0.97839 0.93290 0.92936 1.21866 0.91382 1.00733 0.92267 1.21154 0.97807 0.98086 1.00267 1.20816 0.98576 0.95394 1.01706 1.20697 0.94848 0.98418 1.02903 1.20801 0.96189 0.98367 0.99460 0.92040 0.92099 0.88364 0.92167 0.92858 0.89602 0.94813 0.93084 0.92730 0.81782 0.88076 0.88344 0.88070 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.42 16 2 O -0.36 -5.00 10.47 -39.26 -0.41 -5.41 16 3 C 0.47 7.69 7.26 36.00 0.26 7.95 16 4 O -0.51 -9.57 15.67 -18.74 -0.29 -9.86 16 5 C -0.08 -1.33 3.07 -91.77 -0.28 -1.61 16 6 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 7 C -0.14 -1.96 9.02 37.16 0.34 -1.63 16 8 C 0.09 1.81 4.47 37.16 0.17 1.97 16 9 O -0.37 -8.51 8.07 -35.23 -0.28 -8.80 16 10 C 0.25 6.06 2.59 -29.03 -0.08 5.98 16 11 H 0.02 0.43 7.70 -51.93 -0.40 0.04 16 12 C -0.54 -14.45 8.89 -34.44 -0.31 -14.76 16 13 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.09 2.24 5.24 -17.82 -0.09 2.14 16 15 N -0.85 -22.22 8.50 55.43 0.47 -21.75 16 16 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 C -0.04 -0.95 4.80 -104.62 -0.50 -1.45 16 21 C -0.04 -1.02 7.46 -39.59 -0.30 -1.32 16 22 C -0.15 -3.22 10.05 -39.59 -0.40 -3.61 16 23 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 24 C -0.15 -2.94 10.05 -39.58 -0.40 -3.34 16 25 C -0.13 -2.80 9.68 -39.58 -0.38 -3.19 16 26 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.34 7.82 -51.93 -0.41 0.94 16 32 H 0.03 0.66 8.09 -51.93 -0.42 0.24 16 33 H 0.05 1.13 7.95 -51.93 -0.41 0.71 16 34 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.17 4.11 5.50 -52.49 -0.29 3.82 16 36 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -28.88 330.95 -7.55 -36.43 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.70 Total: 3.36 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -1.30 Total: -14.66 kcal Atomic # 7 Polarization: -22.22 SS G_CDS: 0.47 Total: -21.75 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.99 Total: -24.07 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.88 -7.55 -36.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205944955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.553 kcal (2) G-P(sol) polarization free energy of solvation -28.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds