Wall clock time and date at job start Mon Mar 30 2020 23:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00102 * 2 1 4 4 O 1.20819 * 119.99810 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99710 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47612 * 300.00315 * 5 3 2 7 7 C 1.53006 * 109.47184 * 60.00260 * 5 3 2 8 8 C 1.52999 * 109.47150 * 179.97438 * 5 3 2 9 9 O 1.42900 * 109.47586 * 175.00009 * 8 5 3 10 10 C 1.42893 * 113.99928 * 180.02562 * 9 8 5 11 11 H 1.08999 * 109.47700 * 329.99693 * 10 9 8 12 12 C 1.50703 * 109.47169 * 90.00495 * 10 9 8 13 13 H 1.07997 * 119.99502 * 239.99803 * 12 10 9 14 14 C 1.37875 * 120.00273 * 59.99389 * 12 10 9 15 15 N 1.31515 * 119.99682 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00066 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46759 * 60.00693 * 16 14 12 18 18 H 1.48494 * 109.47404 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47545 * 300.00366 * 16 14 12 20 20 C 1.50706 * 109.46826 * 210.00069 * 10 9 8 21 21 C 1.38237 * 120.00220 * 324.72558 * 20 10 9 22 22 C 1.38225 * 120.00136 * 179.78643 * 21 20 10 23 23 C 1.38241 * 120.00248 * 0.44729 * 22 21 20 24 24 C 1.38236 * 119.99719 * 359.80817 * 23 22 21 25 25 C 1.38235 * 119.99828 * 145.00506 * 20 10 9 26 26 H 1.08994 * 109.47017 * 299.99990 * 1 2 3 27 27 H 1.08999 * 109.46866 * 60.00142 * 1 2 3 28 28 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47002 * 299.99404 * 7 5 3 30 30 H 1.08993 * 109.46955 * 59.99842 * 7 5 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 7 5 3 32 32 H 1.09001 * 109.47317 * 295.00671 * 8 5 3 33 33 H 1.09007 * 109.46669 * 55.00329 * 8 5 3 34 34 H 0.97004 * 119.99759 * 180.02562 * 15 14 12 35 35 H 1.08000 * 119.99547 * 359.97438 * 21 20 10 36 36 H 1.07998 * 120.00401 * 180.27516 * 22 21 20 37 37 H 1.07997 * 120.00066 * 179.83473 * 23 22 21 38 38 H 1.07995 * 120.00482 * 180.02562 * 24 23 22 39 39 H 1.08000 * 120.00307 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9558 0.7808 0.8908 7 6 4.1139 0.5809 -1.2484 8 6 4.0003 2.7419 -0.0002 9 8 5.4223 2.8183 0.1178 10 6 5.9339 4.1524 0.1275 11 1 5.2796 4.7969 -0.4596 12 6 5.9946 4.6568 1.5464 13 1 5.4340 5.5347 1.8317 14 6 6.7656 3.9976 2.4801 15 7 7.4485 2.9288 2.1324 16 14 6.8413 4.6232 4.2385 17 1 5.4779 4.6121 4.8269 18 1 7.7331 3.7457 5.0382 19 1 7.3734 6.0095 4.2482 20 6 7.3177 4.1641 -0.4693 21 6 8.1697 3.0958 -0.2604 22 6 9.4373 3.1045 -0.8115 23 6 9.8564 4.1858 -1.5639 24 6 9.0064 5.2566 -1.7685 25 6 7.7371 5.2458 -1.2209 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.8048 -0.4644 -1.2483 30 1 3.7245 1.0749 -2.1385 31 1 5.2024 0.6383 -1.2482 32 1 3.6871 3.2130 -0.9319 33 1 3.5377 3.2580 0.8412 34 1 7.9907 2.4647 2.7894 35 1 7.8437 2.2529 0.3310 36 1 10.1013 2.2679 -0.6520 37 1 10.8478 4.1938 -1.9923 38 1 9.3336 6.1012 -2.3566 39 1 7.0730 6.0824 -1.3808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205944955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:34 Heat of formation + Delta-G solvation = -119.397345 kcal Electronic energy + Delta-G solvation = -21876.992649 eV Core-core repulsion = 18556.478188 eV Total energy + Delta-G solvation = -3320.514461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.66037 -39.94539 -38.38655 -37.50935 -35.41035 -34.08773 -32.02864 -31.23282 -28.81772 -28.52851 -27.25914 -24.91332 -24.21409 -22.92825 -21.85313 -21.18046 -19.00404 -18.41394 -17.84996 -17.56056 -17.16409 -16.95086 -16.27179 -16.08700 -15.70280 -15.06594 -14.93103 -14.73718 -14.30086 -14.09448 -13.91870 -13.69867 -13.43491 -13.20693 -13.04479 -12.89444 -12.81417 -12.71511 -12.39280 -12.25650 -11.86023 -11.79657 -11.71607 -11.45911 -11.37832 -11.04795 -10.69361 -9.92406 -9.38221 -9.13984 -7.89491 -6.31762 0.85147 1.02962 1.08471 1.40117 1.40901 1.47425 1.61214 2.40457 3.08449 3.34197 3.45244 3.65130 3.91177 4.14307 4.28880 4.32638 4.34043 4.38062 4.42343 4.57758 4.63054 4.68331 4.72405 4.81699 4.93329 4.96504 5.02530 5.16233 5.24857 5.25297 5.38978 5.49793 5.64636 5.71306 5.91682 6.07058 6.18943 6.37980 6.54131 6.62929 6.67474 7.05289 7.45681 8.89906 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.005663 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.389584 B = 4943.241210 C = 6032.002568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.478 3.522 4 O -0.538 6.538 5 C -0.076 4.076 6 H 0.116 0.884 7 C -0.126 4.126 8 C 0.090 3.910 9 O -0.374 6.374 10 C 0.246 3.754 11 H 0.011 0.989 12 C -0.571 4.571 13 H 0.046 0.954 14 C 0.049 3.951 15 N -0.855 5.855 16 Si 0.941 3.059 17 H -0.277 1.277 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.066 4.066 21 C -0.063 4.063 22 C -0.160 4.160 23 C -0.141 4.141 24 C -0.146 4.146 25 C -0.145 4.145 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.137 0.863 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.142 0.858 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 -6.525 -6.269 10.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.322 3.678 4 O -0.428 6.428 5 C -0.095 4.095 6 H 0.133 0.867 7 C -0.183 4.183 8 C 0.012 3.988 9 O -0.293 6.293 10 C 0.190 3.810 11 H 0.029 0.971 12 C -0.608 4.608 13 H 0.064 0.936 14 C -0.155 4.155 15 N -0.490 5.490 16 Si 0.767 3.233 17 H -0.203 1.203 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.067 4.067 21 C -0.082 4.082 22 C -0.178 4.178 23 C -0.158 4.158 24 C -0.164 4.164 25 C -0.163 4.163 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.155 0.845 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.159 0.841 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.768 -6.555 -6.179 10.192 hybrid contribution -0.487 1.028 1.355 1.769 sum -5.256 -5.527 -4.824 9.024 Atomic orbital electron populations 1.23605 0.74624 1.05947 1.02523 1.86497 1.25109 1.31984 1.83575 1.23700 0.91779 0.81365 0.70921 1.90642 1.67847 1.37504 1.46823 1.20831 0.86409 0.97904 1.04362 0.86656 1.21622 1.02320 1.00706 0.93668 1.21827 0.84506 0.93877 0.98587 1.87904 1.17319 1.29650 1.94454 1.18490 0.88541 0.80721 0.93281 0.97121 1.21591 1.30160 1.13348 0.95683 0.93600 1.25511 0.93775 0.94810 1.01431 1.69976 1.27508 1.17871 1.33656 0.85905 0.77915 0.78404 0.81053 1.20284 1.20186 1.20301 1.20042 0.97444 0.94622 0.94594 1.21684 0.92818 1.00188 0.93469 1.21411 0.96962 0.99492 0.99949 1.21247 1.00068 0.94225 1.00310 1.21115 0.93688 0.99545 1.02005 1.21036 0.97638 0.98027 0.99627 0.92275 0.91768 0.84457 0.89476 0.92290 0.90984 0.94649 0.95766 0.92802 0.84059 0.86010 0.84475 0.84499 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.36 -9.34 10.47 -51.42 -0.54 -9.88 16 3 C 0.48 15.58 7.26 71.24 0.52 16.09 16 4 O -0.54 -20.58 15.67 21.99 0.34 -20.24 16 5 C -0.08 -2.58 3.07 -11.54 -0.04 -2.62 16 6 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 7 C -0.13 -3.58 9.02 71.98 0.65 -2.93 16 8 C 0.09 3.81 4.47 71.98 0.32 4.13 16 9 O -0.37 -18.15 8.07 -148.98 -1.20 -19.35 16 10 C 0.25 12.55 2.59 29.10 0.08 12.63 16 11 H 0.01 0.54 7.70 -2.39 -0.02 0.52 16 12 C -0.57 -31.53 8.89 25.60 0.23 -31.30 16 13 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 14 C 0.05 2.65 5.24 84.65 0.44 3.09 16 15 N -0.86 -45.66 8.50 21.45 0.18 -45.47 16 16 Si 0.94 43.10 29.54 68.60 2.03 45.13 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 20 C -0.07 -3.21 4.80 -19.86 -0.10 -3.31 16 21 C -0.06 -2.95 7.46 22.27 0.17 -2.78 16 22 C -0.16 -6.38 10.05 22.27 0.22 -6.16 16 23 C -0.14 -4.97 10.05 22.27 0.22 -4.74 16 24 C -0.15 -5.28 10.05 22.27 0.22 -5.06 16 25 C -0.15 -6.18 9.68 22.27 0.22 -5.97 16 26 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 27 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 28 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 2.00 8.11 -2.39 -0.02 1.98 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 2.26 7.82 -2.39 -0.02 2.24 16 32 H 0.04 1.46 8.09 -2.39 -0.02 1.44 16 33 H 0.02 1.14 7.95 -2.38 -0.02 1.12 16 34 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 35 H 0.14 7.28 5.50 -2.91 -0.02 7.26 16 36 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 37 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 38 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 39 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -63.34 330.95 6.19 -57.15 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 1.03 Total: 19.90 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 4.35 Total: -27.24 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.18 Total: -45.47 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -1.40 Total: -49.46 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -63.34 6.19 -57.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205944955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.250 kcal (2) G-P(sol) polarization free energy of solvation -63.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds