Wall clock time and date at job start Mon Mar 30 2020 23:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 116.99977 * 2 1 4 4 O 1.20818 * 120.00410 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99365 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.46558 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46782 * 180.02562 * 6 5 3 8 8 O 1.42899 * 109.47075 * 179.97438 * 7 6 5 9 9 C 1.42898 * 114.00025 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47259 * 330.00253 * 9 8 7 11 11 C 1.50699 * 109.46964 * 90.00040 * 9 8 7 12 12 H 1.07996 * 120.00370 * 239.99770 * 11 9 8 13 13 C 1.37882 * 119.99790 * 60.00152 * 11 9 8 14 14 N 1.31508 * 120.00257 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99910 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47104 * 89.99584 * 15 13 11 17 17 H 1.48500 * 109.47256 * 209.99881 * 15 13 11 18 18 H 1.48506 * 109.46930 * 329.99722 * 15 13 11 19 19 C 1.50703 * 109.47171 * 210.00101 * 9 8 7 20 20 C 1.38236 * 119.99787 * 324.72807 * 19 9 8 21 21 C 1.38241 * 119.99636 * 179.81278 * 20 19 9 22 22 C 1.38234 * 120.00115 * 0.39672 * 21 20 19 23 23 C 1.38240 * 119.99714 * 359.85290 * 22 21 20 24 24 C 1.38228 * 120.00011 * 145.00451 * 19 9 8 25 25 H 1.09007 * 109.46676 * 299.99899 * 1 2 3 26 26 H 1.09000 * 109.47124 * 59.99075 * 1 2 3 27 27 H 1.08990 * 109.47345 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47223 * 60.00229 * 5 3 2 29 29 H 1.08997 * 109.47635 * 299.99725 * 5 3 2 30 30 H 1.09000 * 109.47238 * 60.00150 * 6 5 3 31 31 H 1.08998 * 109.47224 * 299.99440 * 6 5 3 32 32 H 1.09000 * 109.47373 * 59.99913 * 7 6 5 33 33 H 1.09007 * 109.46576 * 299.99792 * 7 6 5 34 34 H 0.97002 * 120.00075 * 180.02562 * 14 13 11 35 35 H 1.07996 * 120.00216 * 359.97438 * 20 19 9 36 36 H 1.08000 * 119.99857 * 180.22806 * 21 20 19 37 37 H 1.07998 * 120.00030 * 179.84064 * 22 21 20 38 38 H 1.08003 * 119.99655 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.00508 * 359.97379 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7419 0.0002 7 6 5.5282 2.8219 -0.0011 8 8 5.9334 4.1922 -0.0009 9 6 7.3501 4.3794 -0.0015 10 1 7.8271 3.5445 0.5120 11 6 7.8475 4.4455 -1.4225 12 1 8.5690 3.7239 -1.7762 13 6 7.3815 5.4273 -2.2710 14 7 6.5026 6.3057 -1.8405 15 14 7.9975 5.5088 -4.0327 16 1 7.1186 4.6869 -4.9029 17 1 7.9777 6.9184 -4.4993 18 1 9.3859 4.9857 -4.0962 19 6 7.6873 5.6649 0.7091 20 6 6.8459 6.7563 0.5997 21 6 7.1532 7.9343 1.2546 22 6 8.3060 8.0234 2.0123 23 6 9.1500 6.9336 2.1175 24 6 8.8407 5.7545 1.4656 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.9557 0.7807 -0.8908 29 1 3.9565 0.7804 0.8891 30 1 3.6109 3.2355 0.8907 31 1 3.6102 3.2366 -0.8893 32 1 5.9172 2.3285 -0.8917 33 1 5.9186 2.3271 0.8883 34 1 6.1745 6.9962 -2.4376 35 1 5.9473 6.6878 0.0047 36 1 6.4941 8.7858 1.1722 37 1 8.5474 8.9445 2.5219 38 1 10.0508 7.0034 2.7091 39 1 9.5001 4.9031 1.5478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206216326.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:49 Heat of formation + Delta-G solvation = -108.442653 kcal Electronic energy + Delta-G solvation = -21235.786706 eV Core-core repulsion = 17915.747276 eV Total energy + Delta-G solvation = -3320.039430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.42133 -38.23453 -36.79714 -36.29665 -33.74065 -32.39353 -30.38407 -29.58562 -28.37643 -26.84521 -25.89767 -22.86428 -21.85883 -21.19823 -20.41791 -19.97536 -17.55602 -16.83212 -16.68154 -16.39680 -15.79170 -15.28198 -14.81873 -14.60623 -14.09321 -13.63733 -13.59715 -13.26462 -12.91426 -12.75110 -12.31899 -12.26476 -12.02916 -11.67066 -11.56443 -11.43142 -10.97026 -10.93082 -10.86364 -10.63786 -10.49955 -10.43975 -10.17671 -10.03053 -9.64627 -9.18412 -8.71866 -8.07679 -7.70049 -7.39192 -5.92447 -4.26547 2.24865 2.52140 2.67579 2.69879 3.25693 3.33000 3.35106 4.34700 4.72466 4.79503 4.97625 5.03696 5.07741 5.18771 5.23375 5.35563 5.51632 5.68577 5.85656 5.88554 5.96824 6.04393 6.17929 6.21819 6.36183 6.41733 6.60544 6.68165 6.76540 6.87271 6.96192 7.17221 7.34951 7.56183 7.66880 7.77312 7.89653 8.08160 8.12033 8.36291 8.57539 8.98073 9.49151 10.91661 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.004449 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.683455 B = 6291.816432 C = 7305.867800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.460 3.540 4 O -0.503 6.503 5 C -0.109 4.109 6 C -0.106 4.106 7 C 0.074 3.926 8 O -0.368 6.368 9 C 0.245 3.755 10 H 0.017 0.983 11 C -0.546 4.546 12 H 0.060 0.940 13 C 0.085 3.915 14 N -0.846 5.846 15 Si 0.890 3.110 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.041 4.041 20 C -0.044 4.044 21 C -0.155 4.155 22 C -0.147 4.147 23 C -0.151 4.151 24 C -0.130 4.130 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.025 0.975 34 H 0.262 0.738 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.879 -8.552 4.664 11.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.303 3.697 4 O -0.390 6.390 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.004 4.004 8 O -0.287 6.287 9 C 0.190 3.810 10 H 0.035 0.965 11 C -0.583 4.583 12 H 0.078 0.922 13 C -0.121 4.121 14 N -0.481 5.481 15 Si 0.717 3.283 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.042 4.042 20 C -0.063 4.063 21 C -0.173 4.173 22 C -0.165 4.165 23 C -0.169 4.169 24 C -0.149 4.149 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.182 0.818 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.349 -7.937 4.591 11.153 hybrid contribution 0.480 0.067 -1.120 1.220 sum -5.868 -7.870 3.472 10.413 Atomic orbital electron populations 1.23221 0.76760 1.03371 1.02534 1.86516 1.23192 1.34010 1.84471 1.23999 0.92488 0.81081 0.72160 1.90688 1.67256 1.36287 1.44721 1.21354 0.86633 1.00902 1.05789 1.21307 0.96277 0.92209 1.04531 1.22006 0.92530 0.87245 0.98582 1.88009 1.25121 1.20709 1.94871 1.18545 0.79052 0.89646 0.93783 0.96516 1.21432 1.26526 1.14715 0.95587 0.92213 1.24978 0.94134 0.94554 0.98432 1.69816 1.28595 1.15493 1.34218 0.86645 0.79290 0.77443 0.84907 1.20485 1.21017 1.19882 1.20010 0.93657 0.97706 0.92793 1.21888 1.01929 0.90329 0.92107 1.21164 0.97573 0.98740 0.99822 1.20815 0.96379 0.97660 1.01653 1.20695 0.99579 0.94114 1.02539 1.20786 0.97681 0.97392 0.98998 0.92001 0.91978 0.88342 0.87506 0.87731 0.90913 0.90321 0.93933 0.95645 0.92762 0.81804 0.88064 0.88329 0.88061 0.87870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.36 10.57 -39.25 -0.41 -4.78 16 3 C 0.46 6.39 7.96 36.01 0.29 6.68 16 4 O -0.50 -8.64 15.73 -18.74 -0.29 -8.93 16 5 C -0.11 -1.36 5.81 -27.88 -0.16 -1.53 16 6 C -0.11 -1.76 4.87 -26.72 -0.13 -1.89 16 7 C 0.07 1.41 5.74 37.16 0.21 1.62 16 8 O -0.37 -8.85 8.53 -35.23 -0.30 -9.15 16 9 C 0.25 6.04 2.59 -29.03 -0.08 5.97 16 10 H 0.02 0.39 7.70 -51.93 -0.40 -0.01 16 11 C -0.55 -14.46 8.89 -34.44 -0.31 -14.77 16 12 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.08 2.26 5.24 -17.82 -0.09 2.16 16 14 N -0.85 -22.81 8.50 55.43 0.47 -22.34 16 15 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C -0.04 -0.99 4.80 -104.62 -0.50 -1.50 16 20 C -0.04 -1.06 7.46 -39.58 -0.30 -1.36 16 21 C -0.15 -3.33 10.05 -39.58 -0.40 -3.73 16 22 C -0.15 -2.91 10.05 -39.58 -0.40 -3.30 16 23 C -0.15 -2.99 10.05 -39.58 -0.40 -3.39 16 24 C -0.13 -2.84 9.68 -39.59 -0.38 -3.22 16 25 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 26 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.43 8.09 -51.92 -0.42 0.01 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.16 4.32 5.50 -52.49 -0.29 4.03 16 36 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -30.31 332.60 -7.84 -38.15 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.72 Total: 3.18 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.57 Total: -16.86 kcal Atomic # 7 Polarization: -22.81 SS G_CDS: 0.47 Total: -22.34 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -1.01 Total: -22.85 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.31 -7.84 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206216326.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.293 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds