Wall clock time and date at job start Mon Mar 30 2020 23:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 116.99977 * 2 1 4 4 O 1.20818 * 120.00410 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99365 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.46558 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46782 * 180.02562 * 6 5 3 8 8 O 1.42899 * 109.47075 * 179.97438 * 7 6 5 9 9 C 1.42898 * 114.00025 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47259 * 330.00253 * 9 8 7 11 11 C 1.50699 * 109.46964 * 90.00040 * 9 8 7 12 12 H 1.07996 * 120.00370 * 239.99770 * 11 9 8 13 13 C 1.37882 * 119.99790 * 60.00152 * 11 9 8 14 14 N 1.31508 * 120.00257 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99910 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47104 * 89.99584 * 15 13 11 17 17 H 1.48500 * 109.47256 * 209.99881 * 15 13 11 18 18 H 1.48506 * 109.46930 * 329.99722 * 15 13 11 19 19 C 1.50703 * 109.47171 * 210.00101 * 9 8 7 20 20 C 1.38236 * 119.99787 * 324.72807 * 19 9 8 21 21 C 1.38241 * 119.99636 * 179.81278 * 20 19 9 22 22 C 1.38234 * 120.00115 * 0.39672 * 21 20 19 23 23 C 1.38240 * 119.99714 * 359.85290 * 22 21 20 24 24 C 1.38228 * 120.00011 * 145.00451 * 19 9 8 25 25 H 1.09007 * 109.46676 * 299.99899 * 1 2 3 26 26 H 1.09000 * 109.47124 * 59.99075 * 1 2 3 27 27 H 1.08990 * 109.47345 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47223 * 60.00229 * 5 3 2 29 29 H 1.08997 * 109.47635 * 299.99725 * 5 3 2 30 30 H 1.09000 * 109.47238 * 60.00150 * 6 5 3 31 31 H 1.08998 * 109.47224 * 299.99440 * 6 5 3 32 32 H 1.09000 * 109.47373 * 59.99913 * 7 6 5 33 33 H 1.09007 * 109.46576 * 299.99792 * 7 6 5 34 34 H 0.97002 * 120.00075 * 180.02562 * 14 13 11 35 35 H 1.07996 * 120.00216 * 359.97438 * 20 19 9 36 36 H 1.08000 * 119.99857 * 180.22806 * 21 20 19 37 37 H 1.07998 * 120.00030 * 179.84064 * 22 21 20 38 38 H 1.08003 * 119.99655 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.00508 * 359.97379 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7419 0.0002 7 6 5.5282 2.8219 -0.0011 8 8 5.9334 4.1922 -0.0009 9 6 7.3501 4.3794 -0.0015 10 1 7.8271 3.5445 0.5120 11 6 7.8475 4.4455 -1.4225 12 1 8.5690 3.7239 -1.7762 13 6 7.3815 5.4273 -2.2710 14 7 6.5026 6.3057 -1.8405 15 14 7.9975 5.5088 -4.0327 16 1 7.1186 4.6869 -4.9029 17 1 7.9777 6.9184 -4.4993 18 1 9.3859 4.9857 -4.0962 19 6 7.6873 5.6649 0.7091 20 6 6.8459 6.7563 0.5997 21 6 7.1532 7.9343 1.2546 22 6 8.3060 8.0234 2.0123 23 6 9.1500 6.9336 2.1175 24 6 8.8407 5.7545 1.4656 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.9557 0.7807 -0.8908 29 1 3.9565 0.7804 0.8891 30 1 3.6109 3.2355 0.8907 31 1 3.6102 3.2366 -0.8893 32 1 5.9172 2.3285 -0.8917 33 1 5.9186 2.3271 0.8883 34 1 6.1745 6.9962 -2.4376 35 1 5.9473 6.6878 0.0047 36 1 6.4941 8.7858 1.1722 37 1 8.5474 8.9445 2.5219 38 1 10.0508 7.0034 2.7091 39 1 9.5001 4.9031 1.5478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206216326.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:49 Heat of formation + Delta-G solvation = -124.407389 kcal Electronic energy + Delta-G solvation = -21236.478989 eV Core-core repulsion = 17915.747276 eV Total energy + Delta-G solvation = -3320.731713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.50120 -39.93166 -38.25258 -37.58055 -35.28818 -34.11349 -32.08777 -31.25020 -29.44272 -28.56260 -27.17274 -24.67372 -23.29396 -22.76312 -21.88486 -21.40427 -18.75568 -18.55048 -17.75230 -17.57876 -17.41410 -16.96413 -16.38817 -16.23224 -15.73665 -15.11281 -14.90351 -14.75220 -14.34857 -14.17792 -13.86238 -13.52247 -13.30529 -13.26095 -13.11699 -12.85976 -12.75563 -12.56766 -12.34245 -12.09274 -11.82828 -11.80727 -11.71555 -11.56243 -11.33654 -10.99834 -10.68599 -9.84087 -9.38973 -9.13965 -7.87625 -6.30528 0.84313 1.01817 1.16152 1.39945 1.41829 1.49832 1.73136 2.41310 3.09835 3.34417 3.46399 3.74120 4.03477 4.23903 4.30667 4.32075 4.37639 4.40060 4.47615 4.55730 4.61131 4.65814 4.69737 4.72077 4.77535 4.93255 5.17932 5.22962 5.23958 5.29147 5.39953 5.49994 5.65281 5.71455 5.90425 6.08306 6.19386 6.39100 6.56114 6.68181 6.71903 7.15979 7.49174 8.91876 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.004449 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.683455 B = 6291.816432 C = 7305.867800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.544 6.544 5 C -0.100 4.100 6 C -0.094 4.094 7 C 0.068 3.932 8 O -0.395 6.395 9 C 0.244 3.756 10 H 0.022 0.978 11 C -0.565 4.565 12 H 0.054 0.946 13 C 0.044 3.956 14 N -0.862 5.862 15 Si 0.943 3.057 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.270 1.270 19 C -0.069 4.069 20 C -0.068 4.068 21 C -0.164 4.164 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.142 4.142 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.135 0.865 28 H 0.128 0.872 29 H 0.137 0.863 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.258 0.742 35 H 0.135 0.865 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 -9.256 5.566 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.309 3.691 4 O -0.434 6.434 5 C -0.137 4.137 6 C -0.132 4.132 7 C -0.009 4.009 8 O -0.315 6.315 9 C 0.188 3.812 10 H 0.040 0.960 11 C -0.602 4.602 12 H 0.072 0.928 13 C -0.160 4.160 14 N -0.497 5.497 15 Si 0.769 3.231 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.195 1.195 19 C -0.070 4.070 20 C -0.087 4.087 21 C -0.182 4.182 22 C -0.160 4.160 23 C -0.163 4.163 24 C -0.160 4.160 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.153 0.847 28 H 0.146 0.854 29 H 0.155 0.845 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.152 0.848 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.354 -8.674 5.500 11.583 hybrid contribution 0.128 0.247 -1.321 1.350 sum -5.227 -8.427 4.179 10.761 Atomic orbital electron populations 1.23543 0.75014 1.05731 1.02336 1.86501 1.24881 1.32594 1.83806 1.24179 0.92896 0.81045 0.71022 1.90680 1.68188 1.37714 1.46860 1.21291 0.86041 0.98024 1.08359 1.21130 0.94574 0.95073 1.02448 1.22235 0.93871 0.85328 0.99437 1.87966 1.24855 1.23625 1.95007 1.18530 0.79275 0.90343 0.93094 0.96023 1.21679 1.26700 1.14797 0.97054 0.92754 1.25608 0.94474 0.94472 1.01482 1.70043 1.29222 1.15660 1.34808 0.85808 0.78878 0.77183 0.81202 1.20182 1.21093 1.19487 1.20162 0.94970 0.97536 0.94317 1.21679 1.01553 0.91941 0.93522 1.21392 0.98836 0.98222 0.99759 1.21237 0.95087 0.99173 1.00478 1.21150 1.00570 0.93020 1.01560 1.21061 0.97057 0.99015 0.98867 0.92103 0.92396 0.84691 0.85379 0.84532 0.92147 0.93325 0.94321 0.93225 0.93235 0.84772 0.86512 0.84512 0.84189 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.06 10.57 -51.37 -0.54 -8.60 16 3 C 0.46 12.61 7.96 71.24 0.57 13.17 16 4 O -0.54 -19.07 15.73 21.99 0.35 -18.73 16 5 C -0.10 -2.37 5.81 29.85 0.17 -2.20 16 6 C -0.09 -3.22 4.87 30.60 0.15 -3.07 16 7 C 0.07 2.63 5.74 71.98 0.41 3.04 16 8 O -0.39 -19.66 8.53 -148.98 -1.27 -20.93 16 9 C 0.24 12.25 2.59 29.10 0.08 12.33 16 10 H 0.02 1.02 7.70 -2.39 -0.02 1.01 16 11 C -0.57 -30.54 8.89 25.60 0.23 -30.31 16 12 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 13 C 0.04 2.36 5.24 84.66 0.44 2.80 16 14 N -0.86 -48.02 8.50 21.45 0.18 -47.83 16 15 Si 0.94 43.10 29.54 68.60 2.03 45.13 16 16 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 C -0.07 -3.40 4.80 -19.87 -0.10 -3.49 16 20 C -0.07 -3.37 7.46 22.27 0.17 -3.21 16 21 C -0.16 -6.93 10.05 22.27 0.22 -6.71 16 22 C -0.14 -5.20 10.05 22.27 0.22 -4.97 16 23 C -0.15 -5.30 10.05 22.27 0.22 -5.08 16 24 C -0.14 -6.00 9.68 22.27 0.22 -5.78 16 25 H 0.06 1.03 8.13 -2.38 -0.02 1.01 16 26 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 27 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.06 2.17 8.10 -2.39 -0.02 2.15 16 31 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.65 8.09 -2.38 -0.02 1.64 16 34 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 35 H 0.13 7.45 5.50 -2.91 -0.02 7.43 16 36 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 39 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -67.51 332.60 5.97 -61.55 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 1.02 Total: 21.26 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 4.20 Total: -31.84 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.18 Total: -47.83 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -1.47 Total: -48.26 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -67.51 5.97 -61.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206216326.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.862 kcal (2) G-P(sol) polarization free energy of solvation -67.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds