Wall clock time and date at job start Mon Mar 30 2020 23:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45189 * 1 3 3 C 1.34237 * 117.00285 * 2 1 4 4 O 1.20823 * 119.99815 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00171 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46782 * 60.00125 * 5 3 2 7 7 C 1.53002 * 109.47316 * 300.00666 * 5 3 2 8 8 C 1.52997 * 109.47171 * 180.02562 * 5 3 2 9 9 O 1.42890 * 109.47211 * 185.00129 * 8 5 3 10 10 C 1.42906 * 114.00225 * 180.02562 * 9 8 5 11 11 H 1.08998 * 109.46975 * 29.99877 * 10 9 8 12 12 C 1.50703 * 109.46879 * 269.99983 * 10 9 8 13 13 H 1.07994 * 120.00389 * 299.90134 * 12 10 9 14 14 C 1.37877 * 119.99634 * 119.90176 * 12 10 9 15 15 N 1.31513 * 120.00118 * 187.04457 * 14 12 10 16 16 Si 1.86804 * 119.99961 * 7.32321 * 14 12 10 17 17 H 1.48498 * 109.47225 * 274.71929 * 16 14 12 18 18 H 1.48497 * 109.47432 * 34.72500 * 16 14 12 19 19 H 1.48500 * 109.46769 * 154.72451 * 16 14 12 20 20 C 1.50700 * 109.47413 * 150.00256 * 10 9 8 21 21 C 1.38234 * 119.99797 * 38.54169 * 20 10 9 22 22 C 1.38242 * 119.99702 * 179.78702 * 21 20 10 23 23 C 1.38231 * 119.99666 * 0.44939 * 22 21 20 24 24 C 1.38235 * 120.00474 * 359.81137 * 23 22 21 25 25 C 1.38230 * 119.99998 * 218.82486 * 20 10 9 26 26 H 1.09002 * 109.47254 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46870 * 299.99684 * 1 2 3 28 28 H 1.08998 * 109.47222 * 59.99402 * 1 2 3 29 29 H 1.08999 * 109.47598 * 59.99721 * 7 5 3 30 30 H 1.08997 * 109.47293 * 179.97438 * 7 5 3 31 31 H 1.09000 * 109.46738 * 300.00020 * 7 5 3 32 32 H 1.09000 * 109.46888 * 65.00518 * 8 5 3 33 33 H 1.08999 * 109.47344 * 305.00775 * 8 5 3 34 34 H 0.97001 * 120.00268 * 180.27461 * 15 14 12 35 35 H 1.07999 * 120.00546 * 0.02562 * 21 20 10 36 36 H 1.08002 * 119.99816 * 180.27541 * 22 21 20 37 37 H 1.08008 * 119.99758 * 179.83148 * 23 22 21 38 38 H 1.08001 * 120.00025 * 180.02562 * 24 23 22 39 39 H 1.08000 * 119.99966 * 359.97211 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9563 0.7806 -0.8892 7 6 4.1129 0.5814 1.2501 8 6 4.0001 2.7420 0.0011 9 8 5.4222 2.8183 -0.1158 10 6 5.9341 4.1525 -0.1245 11 1 5.2793 4.7967 0.4624 12 6 5.9957 4.6576 -1.5431 13 1 6.6013 4.1424 -2.2739 14 6 5.2788 5.7774 -1.9078 15 7 5.2205 6.1382 -3.1711 16 14 4.3967 6.7865 -0.6066 17 1 3.0589 6.1970 -0.3456 18 1 5.1927 6.7822 0.6470 19 1 4.2372 8.1826 -1.0869 20 6 7.3174 4.1639 0.4732 21 6 8.1931 3.1274 0.2088 22 6 9.4636 3.1401 0.7536 23 6 9.8550 4.1844 1.5702 24 6 8.9775 5.2182 1.8389 25 6 7.7086 5.2077 1.2906 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 3.8039 -0.4639 1.2502 30 1 5.2014 0.6380 1.2503 31 1 3.7228 1.0756 2.1398 32 1 3.6864 3.2133 0.9325 33 1 3.5382 3.2579 -0.8407 34 1 4.7194 6.9283 -3.4273 35 1 7.8861 2.3098 -0.4265 36 1 10.1493 2.3325 0.5434 37 1 10.8467 4.1930 1.9980 38 1 9.2835 6.0343 2.4766 39 1 7.0230 6.0154 1.5005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206568919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:38 Heat of formation + Delta-G solvation = -113.693792 kcal Electronic energy + Delta-G solvation = -21679.711658 eV Core-core repulsion = 18359.444522 eV Total energy + Delta-G solvation = -3320.267137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45682 -38.70043 -37.13521 -36.28575 -33.89833 -32.50236 -30.94053 -30.21240 -27.84180 -27.15802 -26.00994 -23.47001 -22.64904 -21.83934 -20.17076 -19.99410 -17.55157 -17.19987 -16.72063 -16.40314 -16.05805 -15.38771 -14.97629 -14.50809 -14.41462 -13.81005 -13.67978 -13.20938 -13.13341 -12.84615 -12.73037 -12.52620 -12.36198 -12.19454 -11.91887 -11.63528 -11.33318 -11.22349 -10.99849 -10.79769 -10.53741 -10.45802 -10.33054 -10.17407 -9.81821 -9.45086 -8.77844 -8.53425 -8.25605 -7.82375 -6.27494 -4.29789 2.05540 2.09490 2.32162 2.70308 3.18080 3.22557 3.26830 4.23512 4.40741 4.63228 4.80954 5.04530 5.08223 5.11721 5.15735 5.31374 5.41201 5.49737 5.54130 5.59948 5.70129 5.91253 5.95530 6.00759 6.18608 6.23349 6.27738 6.31432 6.41359 6.47243 6.55523 6.69690 6.75987 7.10352 7.19606 7.37324 7.45332 7.69910 7.82866 8.13739 8.40937 8.85477 9.34263 10.84547 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.005979 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.897639 B = 4681.793760 C = 5975.097119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.503 6.503 5 C -0.080 4.080 6 H 0.118 0.882 7 C -0.137 4.137 8 C 0.086 3.914 9 O -0.391 6.391 10 C 0.214 3.786 11 H 0.033 0.967 12 C -0.523 4.523 13 H 0.083 0.917 14 C 0.081 3.919 15 N -0.879 5.879 16 Si 0.861 3.139 17 H -0.268 1.268 18 H -0.262 1.262 19 H -0.282 1.282 20 C -0.031 4.031 21 C -0.100 4.100 22 C -0.127 4.127 23 C -0.146 4.146 24 C -0.124 4.124 25 C -0.128 4.128 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.268 0.732 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 -9.913 9.366 13.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.311 3.689 4 O -0.390 6.390 5 C -0.100 4.100 6 H 0.136 0.864 7 C -0.194 4.194 8 C 0.009 3.991 9 O -0.311 6.311 10 C 0.159 3.841 11 H 0.051 0.949 12 C -0.560 4.560 13 H 0.101 0.899 14 C -0.123 4.123 15 N -0.516 5.516 16 Si 0.688 3.312 17 H -0.193 1.193 18 H -0.187 1.187 19 H -0.207 1.207 20 C -0.032 4.032 21 C -0.118 4.118 22 C -0.145 4.145 23 C -0.164 4.164 24 C -0.142 4.142 25 C -0.146 4.146 26 H 0.117 0.883 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.391 -9.629 9.214 13.540 hybrid contribution -0.913 1.096 0.400 1.482 sum -3.304 -8.533 9.614 13.273 Atomic orbital electron populations 1.23234 0.76789 1.03383 1.02544 1.86504 1.23062 1.33665 1.84356 1.23819 0.92011 0.81159 0.71931 1.90687 1.67225 1.36303 1.44796 1.20942 0.86061 0.99798 1.03153 0.86366 1.21702 1.03098 0.99654 0.94956 1.21899 0.84463 0.91998 1.00751 1.87737 1.17808 1.30724 1.94835 1.19052 0.87904 0.81216 0.95942 0.94935 1.21258 1.29337 1.12078 0.93316 0.89926 1.25091 0.95063 0.97045 0.95136 1.69889 1.40522 1.25480 1.15687 0.87115 0.81033 0.80483 0.82617 1.19281 1.18683 1.20735 1.20139 0.97268 0.93258 0.92532 1.20948 0.92839 0.98716 0.99322 1.21060 0.96394 0.98446 0.98584 1.20896 0.99094 0.95595 1.00860 1.20931 0.94096 0.98447 1.00711 1.20975 0.96638 0.98773 0.98222 0.88268 0.92064 0.91916 0.91861 0.89831 0.92649 0.94187 0.92054 0.92161 0.85932 0.87021 0.87228 0.87043 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.83 10.47 -39.28 -0.41 -5.24 16 3 C 0.47 7.56 7.26 36.01 0.26 7.82 16 4 O -0.50 -9.70 15.67 -18.75 -0.29 -9.99 16 5 C -0.08 -1.28 3.07 -91.77 -0.28 -1.56 16 6 H 0.12 1.77 8.14 -51.93 -0.42 1.34 16 7 C -0.14 -1.80 9.02 37.16 0.34 -1.46 16 8 C 0.09 1.73 4.47 37.16 0.17 1.90 16 9 O -0.39 -8.52 8.78 -35.23 -0.31 -8.83 16 10 C 0.21 5.09 2.28 -29.03 -0.07 5.03 16 11 H 0.03 0.79 4.29 -51.93 -0.22 0.56 16 12 C -0.52 -14.47 9.16 -34.44 -0.32 -14.79 16 13 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 14 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 15 N -0.88 -26.22 13.96 55.43 0.77 -25.44 16 16 Si 0.86 20.98 26.96 -169.99 -4.58 16.39 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.26 -5.98 5.87 56.52 0.33 -5.65 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.03 -0.68 4.96 -104.63 -0.52 -1.20 16 21 C -0.10 -1.97 9.36 -39.58 -0.37 -2.34 16 22 C -0.13 -2.14 10.05 -39.58 -0.40 -2.53 16 23 C -0.15 -2.35 10.05 -39.58 -0.40 -2.74 16 24 C -0.12 -2.11 10.05 -39.58 -0.40 -2.51 16 25 C -0.13 -2.56 9.67 -39.59 -0.38 -2.95 16 26 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.61 8.13 -51.92 -0.42 0.19 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 30 H 0.08 1.13 7.82 -51.93 -0.41 0.72 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.06 1.40 7.96 -51.93 -0.41 0.99 16 34 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 35 H 0.12 2.39 7.74 -52.49 -0.41 1.99 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.11 2.26 7.14 -52.49 -0.37 1.88 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -31.45 333.71 -6.87 -38.32 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.67 Total: 3.50 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -1.40 Total: -13.73 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.77 Total: -25.44 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -1.01 Total: -24.06 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.58 Total: 16.39 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.45 -6.87 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206568919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.374 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds