Wall clock time and date at job start Mon Mar 30 2020 23:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45189 * 1 3 3 C 1.34237 * 117.00285 * 2 1 4 4 O 1.20823 * 119.99815 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00171 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46782 * 60.00125 * 5 3 2 7 7 C 1.53002 * 109.47316 * 300.00666 * 5 3 2 8 8 C 1.52997 * 109.47171 * 180.02562 * 5 3 2 9 9 O 1.42890 * 109.47211 * 185.00129 * 8 5 3 10 10 C 1.42906 * 114.00225 * 180.02562 * 9 8 5 11 11 H 1.08998 * 109.46975 * 29.99877 * 10 9 8 12 12 C 1.50703 * 109.46879 * 269.99983 * 10 9 8 13 13 H 1.07994 * 120.00389 * 299.90134 * 12 10 9 14 14 C 1.37877 * 119.99634 * 119.90176 * 12 10 9 15 15 N 1.31513 * 120.00118 * 187.04457 * 14 12 10 16 16 Si 1.86804 * 119.99961 * 7.32321 * 14 12 10 17 17 H 1.48498 * 109.47225 * 274.71929 * 16 14 12 18 18 H 1.48497 * 109.47432 * 34.72500 * 16 14 12 19 19 H 1.48500 * 109.46769 * 154.72451 * 16 14 12 20 20 C 1.50700 * 109.47413 * 150.00256 * 10 9 8 21 21 C 1.38234 * 119.99797 * 38.54169 * 20 10 9 22 22 C 1.38242 * 119.99702 * 179.78702 * 21 20 10 23 23 C 1.38231 * 119.99666 * 0.44939 * 22 21 20 24 24 C 1.38235 * 120.00474 * 359.81137 * 23 22 21 25 25 C 1.38230 * 119.99998 * 218.82486 * 20 10 9 26 26 H 1.09002 * 109.47254 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46870 * 299.99684 * 1 2 3 28 28 H 1.08998 * 109.47222 * 59.99402 * 1 2 3 29 29 H 1.08999 * 109.47598 * 59.99721 * 7 5 3 30 30 H 1.08997 * 109.47293 * 179.97438 * 7 5 3 31 31 H 1.09000 * 109.46738 * 300.00020 * 7 5 3 32 32 H 1.09000 * 109.46888 * 65.00518 * 8 5 3 33 33 H 1.08999 * 109.47344 * 305.00775 * 8 5 3 34 34 H 0.97001 * 120.00268 * 180.27461 * 15 14 12 35 35 H 1.07999 * 120.00546 * 0.02562 * 21 20 10 36 36 H 1.08002 * 119.99816 * 180.27541 * 22 21 20 37 37 H 1.08008 * 119.99758 * 179.83148 * 23 22 21 38 38 H 1.08001 * 120.00025 * 180.02562 * 24 23 22 39 39 H 1.08000 * 119.99966 * 359.97211 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9563 0.7806 -0.8892 7 6 4.1129 0.5814 1.2501 8 6 4.0001 2.7420 0.0011 9 8 5.4222 2.8183 -0.1158 10 6 5.9341 4.1525 -0.1245 11 1 5.2793 4.7967 0.4624 12 6 5.9957 4.6576 -1.5431 13 1 6.6013 4.1424 -2.2739 14 6 5.2788 5.7774 -1.9078 15 7 5.2205 6.1382 -3.1711 16 14 4.3967 6.7865 -0.6066 17 1 3.0589 6.1970 -0.3456 18 1 5.1927 6.7822 0.6470 19 1 4.2372 8.1826 -1.0869 20 6 7.3174 4.1639 0.4732 21 6 8.1931 3.1274 0.2088 22 6 9.4636 3.1401 0.7536 23 6 9.8550 4.1844 1.5702 24 6 8.9775 5.2182 1.8389 25 6 7.7086 5.2077 1.2906 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 3.8039 -0.4639 1.2502 30 1 5.2014 0.6380 1.2503 31 1 3.7228 1.0756 2.1398 32 1 3.6864 3.2133 0.9325 33 1 3.5382 3.2579 -0.8407 34 1 4.7194 6.9283 -3.4273 35 1 7.8861 2.3098 -0.4265 36 1 10.1493 2.3325 0.5434 37 1 10.8467 4.1930 1.9980 38 1 9.2835 6.0343 2.4766 39 1 7.0230 6.0154 1.5005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206568919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:38 Heat of formation + Delta-G solvation = -132.357232 kcal Electronic energy + Delta-G solvation = -21680.520966 eV Core-core repulsion = 18359.444522 eV Total energy + Delta-G solvation = -3321.076444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.72153 -40.22112 -38.66294 -37.59916 -35.45585 -34.44549 -32.51401 -31.61734 -29.08847 -28.69032 -27.42822 -24.96587 -24.24970 -23.25175 -21.78818 -21.29092 -19.32722 -18.82295 -18.04287 -17.71615 -17.42536 -17.00236 -16.54331 -16.15382 -15.94056 -15.21881 -14.98201 -14.86706 -14.55816 -14.42413 -14.12654 -13.95421 -13.84200 -13.42553 -13.26537 -12.98805 -12.91874 -12.72908 -12.65946 -12.15001 -11.93175 -11.88823 -11.83029 -11.78313 -11.48348 -11.28011 -10.89960 -10.29968 -9.66530 -9.39776 -8.45843 -6.52459 0.62606 0.67251 1.03770 1.20946 1.23450 1.30204 1.53162 2.17622 2.75547 3.11055 3.16185 3.54519 3.81380 3.99778 4.12584 4.21113 4.27756 4.29738 4.29941 4.33817 4.41319 4.52937 4.61281 4.68272 4.73737 4.86692 4.88942 4.93457 4.96760 5.21035 5.23966 5.31721 5.34371 5.36145 5.71894 5.75923 5.90834 6.04950 6.28767 6.45840 6.58814 6.65189 7.16463 8.70414 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.005979 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.897639 B = 4681.793760 C = 5975.097119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.475 3.525 4 O -0.542 6.542 5 C -0.077 4.077 6 H 0.126 0.874 7 C -0.128 4.128 8 C 0.084 3.916 9 O -0.388 6.388 10 C 0.220 3.780 11 H 0.029 0.971 12 C -0.527 4.527 13 H 0.038 0.962 14 C 0.030 3.970 15 N -0.928 5.928 16 Si 0.916 3.084 17 H -0.270 1.270 18 H -0.237 1.237 19 H -0.274 1.274 20 C -0.067 4.067 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.134 4.134 24 C -0.120 4.120 25 C -0.147 4.147 26 H 0.140 0.860 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.024 0.976 34 H 0.270 0.730 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -11.026 12.162 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.319 3.681 4 O -0.432 6.432 5 C -0.096 4.096 6 H 0.144 0.856 7 C -0.185 4.185 8 C 0.007 3.993 9 O -0.308 6.308 10 C 0.164 3.836 11 H 0.047 0.953 12 C -0.564 4.564 13 H 0.056 0.944 14 C -0.171 4.171 15 N -0.567 5.567 16 Si 0.739 3.261 17 H -0.195 1.195 18 H -0.160 1.160 19 H -0.199 1.199 20 C -0.067 4.067 21 C -0.136 4.136 22 C -0.140 4.140 23 C -0.152 4.152 24 C -0.138 4.138 25 C -0.165 4.165 26 H 0.158 0.842 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.129 0.871 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.240 -10.781 12.027 16.199 hybrid contribution -1.215 1.291 -0.479 1.836 sum -2.455 -9.490 11.548 15.147 Atomic orbital electron populations 1.23614 0.74623 1.06034 1.02453 1.86484 1.25061 1.31707 1.83538 1.23746 0.91926 0.81419 0.70989 1.90676 1.67975 1.37705 1.46806 1.20875 0.86518 0.97008 1.05216 0.85582 1.21676 1.02647 1.00920 0.93276 1.21949 0.83200 0.94982 0.99165 1.87709 1.18843 1.29517 1.94704 1.18878 0.89713 0.81492 0.93497 0.95347 1.21407 1.28272 1.11833 0.94911 0.94405 1.25856 0.95955 0.98229 0.97021 1.70020 1.42453 1.26517 1.17756 0.86228 0.79832 0.78967 0.81076 1.19538 1.16026 1.19887 1.20074 0.96331 0.95349 0.94957 1.20995 0.94270 0.98242 1.00061 1.21431 0.95356 0.99681 0.97533 1.21418 1.00528 0.94083 0.99146 1.21335 0.92728 0.99658 1.00068 1.21105 0.98305 0.98221 0.98907 0.84213 0.91834 0.92459 0.89038 0.90218 0.92331 0.93983 0.95810 0.92025 0.87063 0.83721 0.82938 0.83630 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.35 -8.88 10.47 -51.49 -0.54 -9.42 16 3 C 0.47 15.20 7.26 71.24 0.52 15.72 16 4 O -0.54 -21.24 15.67 21.97 0.34 -20.89 16 5 C -0.08 -2.44 3.07 -11.54 -0.04 -2.48 16 6 H 0.13 3.77 8.14 -2.39 -0.02 3.76 16 7 C -0.13 -3.16 9.02 71.98 0.65 -2.51 16 8 C 0.08 3.51 4.47 71.98 0.32 3.83 16 9 O -0.39 -17.52 8.78 -148.98 -1.31 -18.83 16 10 C 0.22 10.82 2.28 29.10 0.07 10.89 16 11 H 0.03 1.40 4.29 -2.39 -0.01 1.39 16 12 C -0.53 -30.81 9.16 25.60 0.23 -30.57 16 13 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 14 C 0.03 1.74 5.47 84.65 0.46 2.21 16 15 N -0.93 -58.20 13.96 21.45 0.30 -57.90 16 16 Si 0.92 44.43 26.96 68.60 1.85 46.28 16 17 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.24 -10.43 5.87 99.48 0.58 -9.84 16 19 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 20 C -0.07 -2.92 4.96 -19.87 -0.10 -3.02 16 21 C -0.12 -4.59 9.36 22.27 0.21 -4.38 16 22 C -0.12 -3.75 10.05 22.27 0.22 -3.53 16 23 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 24 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16 25 C -0.15 -5.72 9.67 22.27 0.22 -5.51 16 26 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.17 8.13 -2.38 -0.02 1.15 16 28 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 29 H 0.09 1.76 8.11 -2.39 -0.02 1.74 16 30 H 0.08 2.05 7.82 -2.39 -0.02 2.03 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.04 1.71 8.08 -2.39 -0.02 1.69 16 33 H 0.02 1.15 7.96 -2.39 -0.02 1.13 16 34 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 35 H 0.11 4.46 7.74 -2.91 -0.02 4.44 16 36 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 37 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.11 4.22 7.14 -2.91 -0.02 4.20 16 Total: -1.00 -72.99 333.71 5.96 -67.03 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.91 Total: 18.35 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 4.41 Total: -24.62 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.30 Total: -57.90 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -1.50 Total: -49.15 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.85 Total: 46.28 kcal Total: -72.99 5.96 -67.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206568919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.331 kcal (2) G-P(sol) polarization free energy of solvation -72.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds