Wall clock time and date at job start Mon Mar 30 2020 23:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00374 * 2 1 4 4 O 1.20820 * 119.99812 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00038 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46909 * 59.99976 * 5 3 2 7 7 C 1.53000 * 109.47456 * 300.00273 * 5 3 2 8 8 C 1.52997 * 109.47011 * 179.97438 * 5 3 2 9 9 O 1.42905 * 109.47264 * 185.00168 * 8 5 3 10 10 C 1.42901 * 114.00134 * 179.97438 * 9 8 5 11 11 H 1.09001 * 109.47135 * 330.00392 * 10 9 8 12 12 C 1.50705 * 109.46672 * 90.00167 * 10 9 8 13 13 H 1.08003 * 119.99555 * 239.99838 * 12 10 9 14 14 C 1.37876 * 120.00014 * 60.00103 * 12 10 9 15 15 N 1.31510 * 120.00129 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99838 * 179.97438 * 14 12 10 17 17 H 1.48509 * 109.47248 * 89.99629 * 16 14 12 18 18 H 1.48498 * 109.47515 * 209.99886 * 16 14 12 19 19 H 1.48510 * 109.47126 * 330.00148 * 16 14 12 20 20 C 1.50700 * 109.46871 * 209.99952 * 10 9 8 21 21 C 1.38229 * 120.00309 * 324.72438 * 20 10 9 22 22 C 1.38230 * 120.00228 * 179.78808 * 21 20 10 23 23 C 1.38239 * 119.99939 * 0.44754 * 22 21 20 24 24 C 1.38239 * 119.99604 * 359.80532 * 23 22 21 25 25 C 1.38233 * 120.00416 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.46795 * 300.00400 * 1 2 3 27 27 H 1.09002 * 109.46733 * 59.99427 * 1 2 3 28 28 H 1.08997 * 109.47536 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47031 * 59.99458 * 7 5 3 30 30 H 1.08994 * 109.47281 * 180.02562 * 7 5 3 31 31 H 1.09006 * 109.46596 * 300.00208 * 7 5 3 32 32 H 1.09001 * 109.47289 * 65.00001 * 8 5 3 33 33 H 1.09004 * 109.47261 * 305.00257 * 8 5 3 34 34 H 0.96995 * 119.99927 * 180.02562 * 15 14 12 35 35 H 1.08003 * 119.99913 * 0.02562 * 21 20 10 36 36 H 1.08000 * 120.00298 * 180.27599 * 22 21 20 37 37 H 1.07995 * 120.00273 * 179.83459 * 23 22 21 38 38 H 1.08000 * 119.99865 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.00180 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9564 0.7804 -0.8892 7 6 4.1130 0.5814 1.2501 8 6 4.0003 2.7419 -0.0002 9 8 5.4225 2.8181 -0.1171 10 6 5.9342 4.1523 -0.1282 11 1 5.1939 4.8217 -0.5662 12 6 6.2322 4.5876 1.2835 13 1 5.7306 5.4485 1.7004 14 6 7.1452 3.8869 2.0428 15 7 7.7556 2.8384 1.5353 16 14 7.5152 4.4270 3.7923 17 1 6.5863 3.7438 4.7282 18 1 8.9150 4.0694 4.1353 19 1 7.3381 5.8972 3.9044 20 6 7.1993 4.1982 -0.9458 21 6 8.0696 3.1244 -0.9335 22 6 9.2279 3.1648 -1.6868 23 6 9.5204 4.2829 -2.4453 24 6 8.6526 5.3589 -2.4535 25 6 7.4920 5.3166 -1.7037 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.8038 -0.4639 1.2502 30 1 5.2014 0.6387 1.2507 31 1 3.7229 1.0757 2.1399 32 1 3.6864 3.2141 0.9308 33 1 3.5384 3.2570 -0.8425 34 1 8.3977 2.3453 2.0696 35 1 7.8428 2.2523 -0.3382 36 1 9.9057 2.3240 -1.6807 37 1 10.4266 4.3156 -3.0319 38 1 8.8813 6.2326 -3.0458 39 1 6.8143 6.1574 -1.7098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206568921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:40 Heat of formation + Delta-G solvation = -104.944260 kcal Electronic energy + Delta-G solvation = -21908.068905 eV Core-core repulsion = 18588.181177 eV Total energy + Delta-G solvation = -3319.887728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37834 -38.26085 -36.85024 -36.12194 -33.75415 -32.31794 -30.32321 -29.58725 -27.76547 -26.78755 -25.70135 -23.34221 -22.57595 -21.30644 -20.15330 -19.80807 -17.49599 -16.77586 -16.51439 -16.17703 -15.67274 -15.22366 -14.54467 -14.42397 -14.06840 -13.61994 -13.31181 -13.19784 -13.01117 -12.69943 -12.26940 -12.19517 -11.97914 -11.70615 -11.51154 -11.34981 -11.16929 -10.96655 -10.75245 -10.67561 -10.54462 -10.16064 -10.10434 -10.01922 -9.69145 -9.20501 -8.73538 -8.11042 -7.71998 -7.41312 -5.94951 -4.27739 2.39004 2.50102 2.66004 2.80401 3.24825 3.31834 3.35218 4.33671 4.78755 4.95709 5.07354 5.07710 5.13507 5.23919 5.34286 5.44479 5.62287 5.77165 5.84779 5.98798 6.09427 6.22646 6.27524 6.33091 6.42589 6.47940 6.60563 6.65033 6.78319 6.87062 6.95925 7.15323 7.32769 7.54744 7.65444 7.87239 7.90197 8.06105 8.09878 8.33494 8.53515 8.93633 9.47340 10.89153 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015816 B = 0.005630 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.915503 B = 4972.201852 C = 5984.422866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.469 3.531 4 O -0.509 6.509 5 C -0.077 4.077 6 H 0.111 0.889 7 C -0.134 4.134 8 C 0.089 3.911 9 O -0.366 6.366 10 C 0.247 3.753 11 H 0.018 0.982 12 C -0.542 4.542 13 H 0.060 0.940 14 C 0.086 3.914 15 N -0.847 5.847 16 Si 0.889 3.111 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.040 4.040 21 C -0.043 4.043 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.130 4.130 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.340 -5.544 -3.841 9.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.312 3.688 4 O -0.396 6.396 5 C -0.096 4.096 6 H 0.129 0.871 7 C -0.191 4.191 8 C 0.011 3.989 9 O -0.286 6.286 10 C 0.191 3.809 11 H 0.036 0.964 12 C -0.579 4.579 13 H 0.078 0.922 14 C -0.119 4.119 15 N -0.483 5.483 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.041 4.041 21 C -0.062 4.062 22 C -0.173 4.173 23 C -0.165 4.165 24 C -0.169 4.169 25 C -0.148 4.148 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.182 0.818 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.322 -5.545 -3.791 9.225 hybrid contribution 0.001 0.772 1.073 1.322 sum -6.321 -4.773 -2.718 8.374 Atomic orbital electron populations 1.23215 0.77013 1.03313 1.02404 1.86526 1.22894 1.33863 1.84308 1.24002 0.92214 0.81003 0.71557 1.90647 1.67345 1.36351 1.45283 1.20942 0.85346 1.00256 1.03085 0.87139 1.21664 1.04162 0.98647 0.94666 1.21811 0.85592 0.91334 1.00197 1.87939 1.15862 1.30356 1.94416 1.18547 0.88347 0.80478 0.93507 0.96383 1.21439 1.24930 1.14131 0.97364 0.92215 1.24944 0.94495 0.94486 0.98019 1.69807 1.25925 1.17534 1.35000 0.86659 0.77635 0.79169 0.84917 1.20486 1.21025 1.19916 1.19983 0.98226 0.93167 0.92715 1.21863 0.91232 1.01146 0.91986 1.21155 0.99038 0.97708 0.99410 1.20817 0.99101 0.95055 1.01520 1.20696 0.95967 0.98246 1.01964 1.20800 0.97564 0.98097 0.98346 0.92062 0.92092 0.88363 0.92603 0.88823 0.92706 0.93152 0.94752 0.92807 0.81771 0.88076 0.88347 0.88072 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.99 10.47 -39.26 -0.41 -5.40 16 3 C 0.47 7.65 7.26 36.01 0.26 7.91 16 4 O -0.51 -9.52 15.67 -18.75 -0.29 -9.82 16 5 C -0.08 -1.30 3.06 -91.77 -0.28 -1.58 16 6 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 7 C -0.13 -2.18 9.02 37.16 0.34 -1.84 16 8 C 0.09 1.79 4.47 37.16 0.17 1.96 16 9 O -0.37 -8.48 8.07 -35.23 -0.28 -8.77 16 10 C 0.25 6.03 2.59 -29.03 -0.08 5.95 16 11 H 0.02 0.43 7.70 -51.93 -0.40 0.03 16 12 C -0.54 -14.25 8.89 -34.44 -0.31 -14.56 16 13 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 14 C 0.09 2.23 5.24 -17.82 -0.09 2.14 16 15 N -0.85 -21.81 8.50 55.43 0.47 -21.34 16 16 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 20 C -0.04 -0.96 4.80 -104.62 -0.50 -1.46 16 21 C -0.04 -1.01 7.46 -39.59 -0.30 -1.31 16 22 C -0.15 -3.22 10.05 -39.58 -0.40 -3.62 16 23 C -0.15 -2.84 10.05 -39.58 -0.40 -3.24 16 24 C -0.15 -2.95 10.05 -39.58 -0.40 -3.34 16 25 C -0.13 -2.80 9.68 -39.58 -0.38 -3.19 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.77 8.11 -51.93 -0.42 0.34 16 30 H 0.09 1.73 7.82 -51.93 -0.41 1.32 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.03 0.69 7.90 -51.93 -0.41 0.28 16 34 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 35 H 0.17 4.09 5.50 -52.48 -0.29 3.81 16 36 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -28.44 330.96 -7.55 -35.99 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.70 Total: 3.63 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -1.30 Total: -14.75 kcal Atomic # 7 Polarization: -21.81 SS G_CDS: 0.47 Total: -21.34 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.99 Total: -23.98 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.44 -7.55 -35.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206568921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.953 kcal (2) G-P(sol) polarization free energy of solvation -28.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds