Wall clock time and date at job start Mon Mar 30 2020 23:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00374 * 2 1 4 4 O 1.20820 * 119.99812 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00038 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46909 * 59.99976 * 5 3 2 7 7 C 1.53000 * 109.47456 * 300.00273 * 5 3 2 8 8 C 1.52997 * 109.47011 * 179.97438 * 5 3 2 9 9 O 1.42905 * 109.47264 * 185.00168 * 8 5 3 10 10 C 1.42901 * 114.00134 * 179.97438 * 9 8 5 11 11 H 1.09001 * 109.47135 * 330.00392 * 10 9 8 12 12 C 1.50705 * 109.46672 * 90.00167 * 10 9 8 13 13 H 1.08003 * 119.99555 * 239.99838 * 12 10 9 14 14 C 1.37876 * 120.00014 * 60.00103 * 12 10 9 15 15 N 1.31510 * 120.00129 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99838 * 179.97438 * 14 12 10 17 17 H 1.48509 * 109.47248 * 89.99629 * 16 14 12 18 18 H 1.48498 * 109.47515 * 209.99886 * 16 14 12 19 19 H 1.48510 * 109.47126 * 330.00148 * 16 14 12 20 20 C 1.50700 * 109.46871 * 209.99952 * 10 9 8 21 21 C 1.38229 * 120.00309 * 324.72438 * 20 10 9 22 22 C 1.38230 * 120.00228 * 179.78808 * 21 20 10 23 23 C 1.38239 * 119.99939 * 0.44754 * 22 21 20 24 24 C 1.38239 * 119.99604 * 359.80532 * 23 22 21 25 25 C 1.38233 * 120.00416 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.46795 * 300.00400 * 1 2 3 27 27 H 1.09002 * 109.46733 * 59.99427 * 1 2 3 28 28 H 1.08997 * 109.47536 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47031 * 59.99458 * 7 5 3 30 30 H 1.08994 * 109.47281 * 180.02562 * 7 5 3 31 31 H 1.09006 * 109.46596 * 300.00208 * 7 5 3 32 32 H 1.09001 * 109.47289 * 65.00001 * 8 5 3 33 33 H 1.09004 * 109.47261 * 305.00257 * 8 5 3 34 34 H 0.96995 * 119.99927 * 180.02562 * 15 14 12 35 35 H 1.08003 * 119.99913 * 0.02562 * 21 20 10 36 36 H 1.08000 * 120.00298 * 180.27599 * 22 21 20 37 37 H 1.07995 * 120.00273 * 179.83459 * 23 22 21 38 38 H 1.08000 * 119.99865 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.00180 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9564 0.7804 -0.8892 7 6 4.1130 0.5814 1.2501 8 6 4.0003 2.7419 -0.0002 9 8 5.4225 2.8181 -0.1171 10 6 5.9342 4.1523 -0.1282 11 1 5.1939 4.8217 -0.5662 12 6 6.2322 4.5876 1.2835 13 1 5.7306 5.4485 1.7004 14 6 7.1452 3.8869 2.0428 15 7 7.7556 2.8384 1.5353 16 14 7.5152 4.4270 3.7923 17 1 6.5863 3.7438 4.7282 18 1 8.9150 4.0694 4.1353 19 1 7.3381 5.8972 3.9044 20 6 7.1993 4.1982 -0.9458 21 6 8.0696 3.1244 -0.9335 22 6 9.2279 3.1648 -1.6868 23 6 9.5204 4.2829 -2.4453 24 6 8.6526 5.3589 -2.4535 25 6 7.4920 5.3166 -1.7037 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.8038 -0.4639 1.2502 30 1 5.2014 0.6387 1.2507 31 1 3.7229 1.0757 2.1399 32 1 3.6864 3.2141 0.9308 33 1 3.5384 3.2570 -0.8425 34 1 8.3977 2.3453 2.0696 35 1 7.8428 2.2523 -0.3382 36 1 9.9057 2.3240 -1.6807 37 1 10.4266 4.3156 -3.0319 38 1 8.8813 6.2326 -3.0458 39 1 6.8143 6.1574 -1.7098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206568921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:40 Heat of formation + Delta-G solvation = -118.924862 kcal Electronic energy + Delta-G solvation = -21908.675150 eV Core-core repulsion = 18588.181177 eV Total energy + Delta-G solvation = -3320.493973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65596 -39.94338 -38.38252 -37.50487 -35.37771 -34.09859 -32.01899 -31.23168 -28.80672 -28.53303 -27.24890 -24.93397 -24.18021 -22.92941 -21.85554 -21.16473 -18.93846 -18.46512 -17.88588 -17.53129 -17.14741 -16.98042 -16.27182 -15.97712 -15.73850 -15.08845 -14.86155 -14.63236 -14.51551 -14.15982 -13.80796 -13.63166 -13.41365 -13.19489 -13.04000 -12.88591 -12.83498 -12.72393 -12.40998 -12.22855 -11.84593 -11.80128 -11.71002 -11.42384 -11.39647 -11.04018 -10.67752 -9.91522 -9.38272 -9.13728 -7.87787 -6.29476 0.84979 1.02857 1.08575 1.39747 1.42414 1.49697 1.61601 2.41825 3.09701 3.34695 3.45722 3.65496 3.91044 4.14304 4.29302 4.33047 4.34739 4.38608 4.42262 4.56834 4.64663 4.69536 4.74168 4.77897 4.91332 4.96426 5.05168 5.16283 5.25079 5.26774 5.43934 5.49804 5.66159 5.71624 5.91586 6.07938 6.19451 6.37877 6.55298 6.63176 6.67952 7.06026 7.47651 8.92009 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015816 B = 0.005630 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.915503 B = 4972.201852 C = 5984.422866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.478 3.522 4 O -0.538 6.538 5 C -0.073 4.073 6 H 0.128 0.872 7 C -0.124 4.124 8 C 0.089 3.911 9 O -0.374 6.374 10 C 0.246 3.754 11 H 0.010 0.990 12 C -0.569 4.569 13 H 0.045 0.955 14 C 0.053 3.947 15 N -0.852 5.852 16 Si 0.939 3.061 17 H -0.276 1.276 18 H -0.279 1.279 19 H -0.278 1.278 20 C -0.067 4.067 21 C -0.063 4.063 22 C -0.160 4.160 23 C -0.141 4.141 24 C -0.146 4.146 25 C -0.145 4.145 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.137 0.863 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.027 0.973 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.697 -6.324 -4.663 9.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.323 3.677 4 O -0.428 6.428 5 C -0.092 4.092 6 H 0.145 0.855 7 C -0.182 4.182 8 C 0.011 3.989 9 O -0.293 6.293 10 C 0.190 3.810 11 H 0.027 0.973 12 C -0.605 4.605 13 H 0.063 0.937 14 C -0.152 4.152 15 N -0.487 5.487 16 Si 0.765 3.235 17 H -0.202 1.202 18 H -0.205 1.205 19 H -0.203 1.203 20 C -0.068 4.068 21 C -0.082 4.082 22 C -0.178 4.178 23 C -0.159 4.159 24 C -0.164 4.164 25 C -0.163 4.163 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.155 0.845 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.161 0.839 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.686 -6.351 -4.621 9.696 hybrid contribution -0.252 0.980 1.254 1.612 sum -5.937 -5.371 -3.367 8.685 Atomic orbital electron populations 1.23606 0.74621 1.05940 1.02532 1.86497 1.25106 1.31984 1.83556 1.23695 0.91755 0.81366 0.70911 1.90640 1.67845 1.37493 1.46843 1.20822 0.86374 0.97822 1.04161 0.85457 1.21557 1.02343 1.00349 0.93913 1.21837 0.84278 0.93894 0.98863 1.87905 1.17369 1.29732 1.94327 1.18494 0.88899 0.80686 0.92948 0.97252 1.21572 1.25798 1.14291 0.98882 0.93696 1.25456 0.94400 0.94696 1.00628 1.69971 1.25646 1.17548 1.35567 0.85887 0.77557 0.78439 0.81627 1.20186 1.20453 1.20343 1.20057 0.98148 0.94478 0.94101 1.21697 0.92681 1.00526 0.93283 1.21416 0.98314 0.99183 0.98914 1.21247 1.00082 0.93925 1.00632 1.21113 0.94709 0.99527 1.01027 1.21035 0.98904 0.97721 0.98685 0.92156 0.91860 0.84483 0.89490 0.91299 0.93669 0.95472 0.94921 0.92825 0.83943 0.86005 0.84495 0.84523 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.67 16 2 O -0.36 -9.22 10.47 -51.42 -0.54 -9.75 16 3 C 0.48 15.39 7.26 71.24 0.52 15.90 16 4 O -0.54 -20.30 15.67 21.98 0.34 -19.95 16 5 C -0.07 -2.46 3.06 -11.54 -0.04 -2.49 16 6 H 0.13 3.87 8.14 -2.39 -0.02 3.85 16 7 C -0.12 -4.04 9.02 71.98 0.65 -3.39 16 8 C 0.09 3.76 4.47 71.98 0.32 4.08 16 9 O -0.37 -18.06 8.07 -148.98 -1.20 -19.26 16 10 C 0.25 12.51 2.59 29.10 0.08 12.59 16 11 H 0.01 0.48 7.70 -2.39 -0.02 0.46 16 12 C -0.57 -31.08 8.89 25.60 0.23 -30.85 16 13 H 0.04 2.49 7.81 -2.91 -0.02 2.47 16 14 C 0.05 2.81 5.24 84.66 0.44 3.25 16 15 N -0.85 -44.73 8.50 21.45 0.18 -44.55 16 16 Si 0.94 42.62 29.54 68.60 2.03 44.64 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 C -0.07 -3.25 4.80 -19.87 -0.10 -3.35 16 21 C -0.06 -2.96 7.46 22.27 0.17 -2.80 16 22 C -0.16 -6.40 10.05 22.27 0.22 -6.17 16 23 C -0.14 -5.00 10.05 22.27 0.22 -4.77 16 24 C -0.15 -5.31 10.05 22.27 0.22 -5.09 16 25 C -0.15 -6.21 9.68 22.27 0.22 -5.99 16 26 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 27 H 0.06 1.15 8.13 -2.39 -0.02 1.14 16 28 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 2.25 8.11 -2.39 -0.02 2.23 16 30 H 0.07 2.60 7.82 -2.39 -0.02 2.58 16 31 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.03 1.37 7.90 -2.38 -0.02 1.35 16 34 H 0.26 13.14 8.31 -92.71 -0.77 12.37 16 35 H 0.14 7.30 5.50 -2.91 -0.02 7.28 16 36 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 38 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 39 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -62.36 330.96 6.19 -56.17 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 1.03 Total: 20.11 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 4.35 Total: -27.41 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.18 Total: -44.55 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -1.40 Total: -48.97 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -62.36 6.19 -56.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206568921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.753 kcal (2) G-P(sol) polarization free energy of solvation -62.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds