Wall clock time and date at job start Mon Mar 30 2020 23:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36004 * 117.00401 * 2 1 4 4 C 1.38708 * 120.02170 * 359.97438 * 3 2 1 5 5 C 1.38774 * 120.53999 * 179.97438 * 4 3 2 6 6 C 1.36494 * 120.57898 * 359.95796 * 5 4 3 7 7 C 1.40771 * 120.01956 * 0.04592 * 6 5 4 8 8 C 1.41185 * 120.26048 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99608 * 154.42996 * 8 7 6 10 10 C 1.39923 * 119.99730 * 334.43446 * 8 7 6 11 11 N 1.30868 * 120.00145 * 343.18633 * 10 8 7 12 12 Si 1.86803 * 119.99658 * 163.19640 * 10 8 7 13 13 H 1.48496 * 109.47565 * 94.96013 * 12 10 8 14 14 H 1.48498 * 109.46794 * 214.95842 * 12 10 8 15 15 H 1.48501 * 109.46881 * 334.95740 * 12 10 8 16 16 C 1.38876 * 120.02203 * 179.72786 * 3 2 1 17 17 O 1.35738 * 120.28382 * 0.02562 * 16 3 2 18 18 C 1.42896 * 117.00426 * 90.00090 * 17 16 3 19 19 C 1.52995 * 109.47412 * 179.97438 * 18 17 16 20 20 H 1.09004 * 112.85076 * 43.80633 * 19 18 17 21 21 C 1.53780 * 113.61536 * 175.00056 * 19 18 17 22 22 C 1.53784 * 87.08160 * 139.98371 * 21 19 18 23 23 H 1.09005 * 113.61017 * 220.01747 * 22 21 19 24 24 O 1.42892 * 113.61450 * 89.11860 * 22 21 19 25 25 C 1.53782 * 87.08196 * 334.56703 * 22 21 19 26 26 H 1.09004 * 109.46581 * 300.00382 * 1 2 3 27 27 H 1.08998 * 109.46976 * 59.99616 * 1 2 3 28 28 H 1.08995 * 109.47206 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.73074 * 359.97438 * 4 3 2 30 30 H 1.07992 * 119.70875 * 179.97438 * 5 4 3 31 31 H 1.07998 * 119.98490 * 180.02562 * 6 5 4 32 32 H 0.97005 * 119.99386 * 180.02562 * 11 10 8 33 33 H 1.08997 * 109.47064 * 299.99915 * 18 17 16 34 34 H 1.09001 * 109.46828 * 59.99894 * 18 17 16 35 35 H 1.08999 * 113.61778 * 254.52923 * 21 19 18 36 36 H 1.09004 * 113.61508 * 25.35296 * 21 19 18 37 37 H 0.96701 * 113.99783 * 180.02562 * 24 22 21 38 38 H 1.09001 * 113.61747 * 270.88550 * 25 22 21 39 39 H 1.08995 * 113.61601 * 139.98009 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.2917 2.3754 -0.0005 5 6 1.9106 3.6175 0.0000 6 6 3.2720 3.7149 0.0019 7 6 4.0615 2.5494 0.0024 8 6 5.4701 2.6443 0.0038 9 1 6.0651 1.8386 0.4079 10 6 6.0952 3.7821 -0.5182 11 7 5.4272 4.5983 -1.2930 12 14 7.8833 4.1359 -0.1093 13 1 8.7532 3.5975 -1.1856 14 1 8.0845 5.6030 0.0024 15 1 8.2335 3.4886 1.1805 16 6 3.4334 1.2849 0.0057 17 8 4.1787 0.1504 0.0108 18 6 4.5403 -0.3940 -1.2599 19 6 5.3727 -1.6610 -1.0538 20 1 4.9670 -2.3129 -0.2801 21 6 5.7120 -2.3949 -2.3619 22 6 7.1084 -2.6443 -1.7678 23 1 7.9164 -2.5354 -2.4912 24 8 7.2002 -3.8515 -1.0088 25 6 6.8795 -1.3910 -0.9065 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.2133 2.3143 -0.0014 30 1 1.3097 4.5148 -0.0009 31 1 3.7436 4.6865 0.0027 32 1 5.8608 5.3869 -1.6551 33 1 3.6381 -0.6389 -1.8203 34 1 5.1257 0.3385 -1.8157 35 1 5.1333 -3.3059 -2.5143 36 1 5.7183 -1.7459 -3.2377 37 1 8.0760 -4.0137 -0.6322 38 1 7.2063 -0.4673 -1.3841 39 1 7.2432 -1.4916 0.1161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218424842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:41 Heat of formation + Delta-G solvation = -88.572602 kcal Electronic energy + Delta-G solvation = -21976.145068 eV Core-core repulsion = 18656.967268 eV Total energy + Delta-G solvation = -3319.177800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.35792 -38.85532 -36.93928 -35.72935 -34.49708 -33.47581 -29.56650 -28.80707 -27.24518 -26.40135 -25.47838 -24.96690 -22.14418 -20.84068 -20.56085 -19.34550 -17.86349 -16.93422 -16.41401 -15.79734 -15.56996 -15.09511 -15.03325 -14.79995 -14.66874 -13.80926 -13.66387 -13.33082 -13.00843 -12.66869 -12.25497 -12.12006 -11.98112 -11.71141 -11.48107 -11.23885 -11.11521 -10.87857 -10.70092 -10.51918 -10.35915 -10.26336 -9.95571 -9.84634 -9.63817 -9.41763 -9.20439 -8.49658 -7.43952 -6.94718 -6.76886 -4.44110 2.62973 2.89339 3.01956 3.07058 3.16071 3.85225 4.15761 4.24712 4.48081 4.68113 4.93044 4.95480 5.13385 5.36774 5.62444 5.65011 5.72204 5.82105 5.89033 5.94370 6.02360 6.12083 6.17543 6.19868 6.32809 6.44148 6.53913 6.56817 6.81393 6.84562 6.94227 7.10684 7.21205 7.62354 7.68921 7.73818 7.91298 8.02431 8.39634 8.43632 8.71217 8.79084 9.22950 10.06269 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010589 B = 0.008119 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.584178 B = 3447.825666 C = 5811.153237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.321 6.321 3 C 0.132 3.868 4 C -0.319 4.319 5 C -0.077 4.077 6 C -0.179 4.179 7 C 0.126 3.874 8 C -0.437 4.437 9 H 0.087 0.913 10 C 0.074 3.926 11 N -0.786 5.786 12 Si 0.908 3.092 13 H -0.269 1.269 14 H -0.274 1.274 15 H -0.258 1.258 16 C -0.060 4.060 17 O -0.309 6.309 18 C 0.074 3.926 19 C -0.094 4.094 20 H 0.095 0.905 21 C -0.126 4.126 22 C 0.074 3.926 23 H 0.064 0.936 24 O -0.553 6.553 25 C -0.161 4.161 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.282 0.718 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.377 0.623 38 H 0.091 0.909 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 -7.056 -1.796 7.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.235 6.235 3 C 0.088 3.912 4 C -0.339 4.339 5 C -0.096 4.096 6 C -0.199 4.199 7 C 0.122 3.878 8 C -0.465 4.465 9 H 0.105 0.895 10 C -0.144 4.144 11 N -0.411 5.411 12 Si 0.732 3.268 13 H -0.195 1.195 14 H -0.199 1.199 15 H -0.181 1.181 16 C -0.106 4.106 17 O -0.226 6.226 18 C -0.001 4.001 19 C -0.112 4.112 20 H 0.113 0.887 21 C -0.163 4.163 22 C 0.015 3.985 23 H 0.082 0.918 24 O -0.358 6.358 25 C -0.198 4.198 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.224 0.776 38 H 0.110 0.890 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.030 -7.169 -1.965 7.505 hybrid contribution 0.885 0.711 -0.058 1.137 sum 1.915 -6.458 -2.023 7.033 Atomic orbital electron populations 1.22788 0.80874 1.01898 1.00575 1.86079 1.19357 1.28511 1.89571 1.19222 0.91380 0.83180 0.97415 1.20300 0.97274 0.92282 1.24025 1.20220 0.95037 0.95084 0.99271 1.20936 0.92011 0.98913 1.07999 1.17638 0.93733 0.89131 0.87255 1.19538 0.91573 1.02029 1.33393 0.89483 1.25999 1.00846 0.94946 0.92646 1.69860 1.38510 1.11176 1.21520 0.86283 0.81680 0.78461 0.80342 1.19466 1.19932 1.18125 1.17889 0.84881 0.86390 1.21407 1.86008 1.70638 1.39406 1.26529 1.22511 0.96687 0.93266 0.87663 1.22368 0.94798 0.96473 0.97557 0.88666 1.23030 0.95139 1.00456 0.97723 1.22755 0.97749 0.84622 0.93331 0.91823 1.86452 1.36881 1.41112 1.71360 1.23659 0.97195 0.98028 1.00946 0.93609 0.93704 0.89849 0.88482 0.89058 0.86089 0.90695 0.94741 0.93323 0.90799 0.88842 0.77605 0.89037 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.81 101.05 0.99 1.56 16 2 O -0.32 -7.10 10.28 -34.30 -0.35 -7.45 16 3 C 0.13 3.24 6.69 -39.17 -0.26 2.97 16 4 C -0.32 -7.33 9.05 -39.21 -0.35 -7.68 16 5 C -0.08 -1.82 9.96 -40.01 -0.40 -2.22 16 6 C -0.18 -4.63 8.63 -39.25 -0.34 -4.97 16 7 C 0.13 3.38 5.57 -106.70 -0.59 2.78 16 8 C -0.44 -11.43 8.71 -37.83 -0.33 -11.76 16 9 H 0.09 2.27 7.66 -52.49 -0.40 1.87 16 10 C 0.07 1.81 5.15 -17.33 -0.09 1.72 16 11 N -0.79 -19.60 10.97 55.55 0.61 -18.99 16 12 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 13 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 14 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 15 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 16 C -0.06 -1.57 5.77 -38.22 -0.22 -1.79 16 17 O -0.31 -7.67 9.14 -33.46 -0.31 -7.98 16 18 C 0.07 1.56 5.90 37.15 0.22 1.78 16 19 C -0.09 -1.63 3.94 -89.81 -0.35 -1.98 16 20 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 21 C -0.13 -1.80 7.47 -25.92 -0.19 -1.99 16 22 C 0.07 0.98 5.28 -25.92 -0.14 0.84 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 O -0.55 -7.15 13.59 -35.23 -0.48 -7.63 16 25 C -0.16 -2.50 7.46 -25.91 -0.19 -2.69 16 26 H 0.05 0.71 7.66 -51.93 -0.40 0.31 16 27 H 0.04 0.69 7.66 -51.93 -0.40 0.29 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.95 6.27 -52.48 -0.33 1.62 16 30 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.12 3.17 6.19 -52.49 -0.33 2.84 16 32 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 1.07 7.84 -51.93 -0.41 0.66 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.38 3.10 9.12 45.56 0.42 3.51 16 38 H 0.09 1.46 7.90 -51.93 -0.41 1.05 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -29.98 327.90 -7.64 -37.62 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.77 Total: 9.77 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.26 Total: -23.43 kcal Atomic # 7 Polarization: -19.60 SS G_CDS: 0.61 Total: -18.99 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -1.14 Total: -23.06 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.98 -7.64 -37.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218424842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.956 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds