Wall clock time and date at job start Mon Mar 30 2020 23:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36004 * 117.00401 * 2 1 4 4 C 1.38708 * 120.02170 * 359.97438 * 3 2 1 5 5 C 1.38774 * 120.53999 * 179.97438 * 4 3 2 6 6 C 1.36494 * 120.57898 * 359.95796 * 5 4 3 7 7 C 1.40771 * 120.01956 * 0.04592 * 6 5 4 8 8 C 1.41185 * 120.26048 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99608 * 154.42996 * 8 7 6 10 10 C 1.39923 * 119.99730 * 334.43446 * 8 7 6 11 11 N 1.30868 * 120.00145 * 343.18633 * 10 8 7 12 12 Si 1.86803 * 119.99658 * 163.19640 * 10 8 7 13 13 H 1.48496 * 109.47565 * 94.96013 * 12 10 8 14 14 H 1.48498 * 109.46794 * 214.95842 * 12 10 8 15 15 H 1.48501 * 109.46881 * 334.95740 * 12 10 8 16 16 C 1.38876 * 120.02203 * 179.72786 * 3 2 1 17 17 O 1.35738 * 120.28382 * 0.02562 * 16 3 2 18 18 C 1.42896 * 117.00426 * 90.00090 * 17 16 3 19 19 C 1.52995 * 109.47412 * 179.97438 * 18 17 16 20 20 H 1.09004 * 112.85076 * 43.80633 * 19 18 17 21 21 C 1.53780 * 113.61536 * 175.00056 * 19 18 17 22 22 C 1.53784 * 87.08160 * 139.98371 * 21 19 18 23 23 H 1.09005 * 113.61017 * 220.01747 * 22 21 19 24 24 O 1.42892 * 113.61450 * 89.11860 * 22 21 19 25 25 C 1.53782 * 87.08196 * 334.56703 * 22 21 19 26 26 H 1.09004 * 109.46581 * 300.00382 * 1 2 3 27 27 H 1.08998 * 109.46976 * 59.99616 * 1 2 3 28 28 H 1.08995 * 109.47206 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.73074 * 359.97438 * 4 3 2 30 30 H 1.07992 * 119.70875 * 179.97438 * 5 4 3 31 31 H 1.07998 * 119.98490 * 180.02562 * 6 5 4 32 32 H 0.97005 * 119.99386 * 180.02562 * 11 10 8 33 33 H 1.08997 * 109.47064 * 299.99915 * 18 17 16 34 34 H 1.09001 * 109.46828 * 59.99894 * 18 17 16 35 35 H 1.08999 * 113.61778 * 254.52923 * 21 19 18 36 36 H 1.09004 * 113.61508 * 25.35296 * 21 19 18 37 37 H 0.96701 * 113.99783 * 180.02562 * 24 22 21 38 38 H 1.09001 * 113.61747 * 270.88550 * 25 22 21 39 39 H 1.08995 * 113.61601 * 139.98009 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.2917 2.3754 -0.0005 5 6 1.9106 3.6175 0.0000 6 6 3.2720 3.7149 0.0019 7 6 4.0615 2.5494 0.0024 8 6 5.4701 2.6443 0.0038 9 1 6.0651 1.8386 0.4079 10 6 6.0952 3.7821 -0.5182 11 7 5.4272 4.5983 -1.2930 12 14 7.8833 4.1359 -0.1093 13 1 8.7532 3.5975 -1.1856 14 1 8.0845 5.6030 0.0024 15 1 8.2335 3.4886 1.1805 16 6 3.4334 1.2849 0.0057 17 8 4.1787 0.1504 0.0108 18 6 4.5403 -0.3940 -1.2599 19 6 5.3727 -1.6610 -1.0538 20 1 4.9670 -2.3129 -0.2801 21 6 5.7120 -2.3949 -2.3619 22 6 7.1084 -2.6443 -1.7678 23 1 7.9164 -2.5354 -2.4912 24 8 7.2002 -3.8515 -1.0088 25 6 6.8795 -1.3910 -0.9065 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.2133 2.3143 -0.0014 30 1 1.3097 4.5148 -0.0009 31 1 3.7436 4.6865 0.0027 32 1 5.8608 5.3869 -1.6551 33 1 3.6381 -0.6389 -1.8203 34 1 5.1257 0.3385 -1.8157 35 1 5.1333 -3.3059 -2.5143 36 1 5.7183 -1.7459 -3.2377 37 1 8.0760 -4.0137 -0.6322 38 1 7.2063 -0.4673 -1.3841 39 1 7.2432 -1.4916 0.1161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218424842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:40 Heat of formation + Delta-G solvation = -107.802540 kcal Electronic energy + Delta-G solvation = -21976.978941 eV Core-core repulsion = 18656.967268 eV Total energy + Delta-G solvation = -3320.011673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.92984 -40.29500 -38.65410 -37.49462 -35.69315 -35.33030 -31.43757 -30.53487 -28.77149 -28.02547 -26.84570 -26.61386 -23.53674 -22.68246 -22.40114 -20.56257 -19.67284 -18.24998 -18.01956 -17.60266 -17.33423 -16.62095 -16.57515 -16.27983 -16.09345 -15.37957 -15.29138 -14.87114 -14.60121 -14.27526 -13.79181 -13.57198 -13.36233 -13.25129 -13.04419 -12.81962 -12.70119 -12.42751 -12.28589 -12.07806 -12.02701 -11.71638 -11.66362 -11.37128 -11.12493 -11.03019 -10.64505 -10.31589 -9.35613 -8.79415 -8.62453 -6.39741 0.79434 1.02671 1.36848 1.47152 1.53340 2.17986 2.61373 2.69487 3.06599 3.18612 3.63538 3.70509 3.80115 3.83749 4.18114 4.31032 4.44076 4.45184 4.49028 4.55559 4.65654 4.68994 4.76598 4.77537 4.88302 4.90541 4.99265 5.04338 5.09207 5.22547 5.24445 5.29679 5.49167 5.73467 5.89223 6.01218 6.09357 6.47734 6.64718 6.78416 6.88265 6.91923 7.35046 8.25251 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010589 B = 0.008119 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.584178 B = 3447.825666 C = 5811.153237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.340 6.340 3 C 0.125 3.875 4 C -0.315 4.315 5 C -0.077 4.077 6 C -0.204 4.204 7 C 0.097 3.903 8 C -0.466 4.466 9 H 0.073 0.927 10 C 0.040 3.960 11 N -0.812 5.812 12 Si 0.979 3.021 13 H -0.258 1.258 14 H -0.261 1.261 15 H -0.261 1.261 16 C -0.088 4.088 17 O -0.327 6.327 18 C 0.081 3.919 19 C -0.102 4.102 20 H 0.081 0.919 21 C -0.120 4.120 22 C 0.094 3.906 23 H 0.096 0.904 24 O -0.567 6.567 25 C -0.164 4.164 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.117 0.883 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.292 0.708 33 H 0.027 0.973 34 H 0.031 0.969 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.398 0.602 38 H 0.084 0.916 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 -7.677 -2.351 8.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.255 6.255 3 C 0.080 3.920 4 C -0.335 4.335 5 C -0.095 4.095 6 C -0.223 4.223 7 C 0.094 3.906 8 C -0.494 4.494 9 H 0.092 0.908 10 C -0.177 4.177 11 N -0.437 5.437 12 Si 0.799 3.201 13 H -0.182 1.182 14 H -0.185 1.185 15 H -0.185 1.185 16 C -0.133 4.133 17 O -0.244 6.244 18 C 0.006 3.994 19 C -0.121 4.121 20 H 0.099 0.901 21 C -0.157 4.157 22 C 0.035 3.965 23 H 0.114 0.886 24 O -0.376 6.376 25 C -0.201 4.201 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.135 0.865 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.249 0.751 38 H 0.102 0.898 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.301 -7.805 -2.520 8.304 hybrid contribution 0.632 0.831 0.130 1.052 sum 1.933 -6.974 -2.391 7.622 Atomic orbital electron populations 1.23179 0.77708 1.04584 1.01556 1.86044 1.22606 1.27526 1.89286 1.19351 0.91226 0.84553 0.96887 1.20653 0.98893 0.91464 1.22508 1.20559 0.94483 0.96668 0.97824 1.20936 0.93158 0.98143 1.10074 1.18001 0.94557 0.89999 0.88054 1.19599 0.91664 1.03038 1.35084 0.90847 1.26773 1.05144 0.94018 0.91775 1.69884 1.40468 1.11629 1.21704 0.85240 0.76130 0.78787 0.79976 1.18221 1.18539 1.18529 1.18218 0.86179 0.86599 1.22351 1.85942 1.70778 1.39156 1.28545 1.22575 0.96532 0.94160 0.86166 1.22419 0.95310 0.94790 0.99544 0.90064 1.23049 0.96064 1.00280 0.96323 1.22589 0.97839 0.83292 0.92757 0.88613 1.86408 1.39062 1.40525 1.71560 1.23670 0.95623 0.99456 1.01396 0.92517 0.92631 0.86513 0.85177 0.86047 0.87166 0.89695 0.95506 0.95093 0.90182 0.87716 0.75134 0.89768 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 9.81 113.37 1.11 1.85 16 2 O -0.34 -14.90 10.28 -79.69 -0.82 -15.72 16 3 C 0.12 6.15 6.69 22.54 0.15 6.30 16 4 C -0.32 -14.19 9.05 22.51 0.20 -13.98 16 5 C -0.08 -3.59 9.96 21.99 0.22 -3.37 16 6 C -0.20 -10.81 8.63 22.48 0.19 -10.61 16 7 C 0.10 5.44 5.57 -21.21 -0.12 5.32 16 8 C -0.47 -25.46 8.71 23.40 0.20 -25.26 16 9 H 0.07 4.06 7.66 -2.91 -0.02 4.04 16 10 C 0.04 1.96 5.15 85.24 0.44 2.40 16 11 N -0.81 -41.25 10.97 21.83 0.24 -41.01 16 12 Si 0.98 37.50 29.59 68.60 2.03 39.53 16 13 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 14 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 15 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 16 C -0.09 -4.78 5.77 23.15 0.13 -4.65 16 17 O -0.33 -17.03 9.14 -76.72 -0.70 -17.74 16 18 C 0.08 3.55 5.90 71.98 0.42 3.97 16 19 C -0.10 -3.61 3.94 -10.27 -0.04 -3.65 16 20 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 21 C -0.12 -3.28 7.47 31.12 0.23 -3.04 16 22 C 0.09 2.28 5.28 31.12 0.16 2.44 16 23 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 24 O -0.57 -13.35 13.59 -148.98 -2.02 -15.37 16 25 C -0.16 -5.07 7.46 31.12 0.23 -4.84 16 26 H 0.06 1.60 7.66 -2.38 -0.02 1.58 16 27 H 0.06 1.57 7.66 -2.39 -0.02 1.55 16 28 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.13 4.88 6.27 -2.91 -0.02 4.86 16 30 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 31 H 0.11 5.97 6.19 -2.91 -0.02 5.95 16 32 H 0.29 13.25 8.30 -92.70 -0.77 12.48 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.03 1.44 7.84 -2.39 -0.02 1.42 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.10 2.62 8.10 -2.38 -0.02 2.60 16 37 H 0.40 5.49 9.12 -74.06 -0.68 4.81 16 38 H 0.08 2.72 7.90 -2.39 -0.02 2.70 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -67.14 327.90 2.66 -64.48 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.38 Total: 32.95 kcal Atomic # 6 Polarization: -50.67 SS G_CDS: 3.55 Total: -47.12 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.24 Total: -41.01 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -3.55 Total: -48.83 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -67.14 2.66 -64.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218424842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.322 kcal (2) G-P(sol) polarization free energy of solvation -67.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds