Wall clock time and date at job start Mon Mar 30 2020 23:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.46884 * 2 1 4 4 C 1.34222 * 117.00137 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00432 * 179.71953 * 4 3 2 7 7 H 1.08999 * 109.47302 * 305.28263 * 6 4 3 8 8 C 1.53006 * 109.46811 * 65.27497 * 6 4 3 9 9 C 1.52995 * 109.47188 * 185.00079 * 8 6 4 10 10 C 1.50700 * 109.46968 * 180.02562 * 9 8 6 11 11 C 1.38233 * 119.99888 * 269.72326 * 10 9 8 12 12 C 1.38237 * 120.00042 * 179.76696 * 11 10 9 13 13 C 1.38243 * 119.99821 * 0.51144 * 12 11 10 14 14 C 1.38234 * 119.99773 * 359.74696 * 13 12 11 15 15 C 1.38235 * 119.99887 * 90.00331 * 10 9 8 16 16 O 1.42890 * 109.47562 * 185.27468 * 6 4 3 17 17 C 1.34931 * 116.99914 * 90.00261 * 16 6 4 18 18 H 1.08004 * 119.99918 * 0.02562 * 17 16 6 19 19 C 1.38639 * 119.99933 * 180.02562 * 17 16 6 20 20 N 1.31583 * 119.99954 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00353 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46890 * 89.99904 * 21 19 17 23 23 H 1.48492 * 109.47451 * 210.00446 * 21 19 17 24 24 H 1.48508 * 109.47044 * 330.00438 * 21 19 17 25 25 H 1.08997 * 109.47361 * 299.99753 * 1 2 3 26 26 H 1.08997 * 109.47194 * 60.00322 * 1 2 3 27 27 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46911 * 239.99959 * 2 1 3 29 29 H 1.08997 * 109.46745 * 119.99968 * 2 1 3 30 30 H 1.09000 * 109.47380 * 305.00748 * 8 6 4 31 31 H 1.09010 * 109.46720 * 65.00355 * 8 6 4 32 32 H 1.09005 * 109.47082 * 299.99994 * 9 8 6 33 33 H 1.08995 * 109.47454 * 60.00210 * 9 8 6 34 34 H 1.07993 * 120.00054 * 0.02562 * 11 10 9 35 35 H 1.08002 * 120.00470 * 180.23611 * 12 11 10 36 36 H 1.07991 * 120.00252 * 179.72302 * 13 12 11 37 37 H 1.07997 * 119.99922 * 179.97438 * 14 13 12 38 38 H 1.08003 * 120.00109 * 359.97438 * 15 10 9 39 39 H 0.96994 * 120.00669 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 -0.0058 7 1 3.5119 3.4959 -0.8479 8 6 3.5566 3.6458 1.3006 9 6 4.0332 5.0985 1.2430 10 6 3.6752 5.7960 2.5300 11 6 2.4616 6.4472 2.6488 12 6 2.1312 7.0830 3.8310 13 6 3.0188 7.0765 4.8908 14 6 4.2345 6.4298 4.7701 15 6 4.5628 5.7895 3.5897 16 8 5.3425 2.8643 -0.1278 17 6 5.8511 2.8693 -1.3775 18 1 5.1898 2.9272 -2.2295 19 6 7.2226 2.8001 -1.5680 20 7 7.7187 2.8054 -2.7867 21 14 8.3664 2.7007 -0.0945 22 1 8.5940 1.2768 0.2602 23 1 9.6636 3.3406 -0.4307 24 1 7.7508 3.4058 1.0584 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.4754 3.6232 1.4372 31 1 4.0390 3.1380 2.1359 32 1 5.1144 5.1211 1.1065 33 1 3.5509 5.6064 0.4078 34 1 1.7700 6.4558 1.8195 35 1 1.1814 7.5885 3.9252 36 1 2.7625 7.5769 5.8128 37 1 4.9281 6.4251 5.5979 38 1 5.5126 5.2843 3.4955 39 1 8.6782 2.7574 -2.9201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224377975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:45 Heat of formation + Delta-G solvation = -109.722255 kcal Electronic energy + Delta-G solvation = -21355.492467 eV Core-core repulsion = 18035.397550 eV Total energy + Delta-G solvation = -3320.094918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.97359 -39.17833 -37.19662 -35.71053 -34.09631 -31.98272 -31.59241 -30.81429 -30.23803 -26.78000 -24.32966 -23.35740 -22.48659 -22.25329 -20.64563 -20.19155 -17.91723 -17.24564 -16.65678 -16.20218 -16.07748 -15.50960 -15.09967 -14.88990 -14.17116 -13.85441 -13.44957 -13.37964 -13.25535 -12.92696 -12.74725 -12.71919 -12.46901 -11.94873 -11.72097 -11.59608 -11.52528 -11.27667 -11.15406 -11.00985 -10.60553 -10.53521 -10.48001 -10.18984 -9.98570 -9.45167 -9.42347 -8.85761 -8.57994 -8.25739 -6.05657 -3.75186 1.43070 1.46524 2.86371 3.07952 3.42274 3.47061 3.58591 3.86192 4.52946 4.82952 4.92742 4.97950 5.01661 5.03832 5.07306 5.17183 5.19402 5.35288 5.40221 5.45934 5.55646 5.57327 5.68306 5.75353 5.81855 5.85497 5.97544 6.04436 6.09384 6.11058 6.21906 6.37530 6.53269 6.56267 6.59257 6.84278 6.91830 7.09432 7.77699 8.24538 8.44638 9.32474 9.75601 11.06117 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.006580 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.958839 B = 4254.137567 C = 6482.959661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.368 6.368 4 C 0.428 3.572 5 O -0.486 6.486 6 C 0.122 3.878 7 H 0.088 0.912 8 C -0.098 4.098 9 C -0.081 4.081 10 C -0.070 4.070 11 C -0.119 4.119 12 C -0.122 4.122 13 C -0.133 4.133 14 C -0.120 4.120 15 C -0.116 4.116 16 O -0.286 6.286 17 C -0.365 4.365 18 H 0.082 0.918 19 C 0.054 3.946 20 N -0.906 5.906 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.263 1.263 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.821 4.836 12.011 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.286 6.286 4 C 0.269 3.731 5 O -0.371 6.371 6 C 0.060 3.940 7 H 0.106 0.894 8 C -0.136 4.136 9 C -0.118 4.118 10 C -0.070 4.070 11 C -0.137 4.137 12 C -0.140 4.140 13 C -0.151 4.151 14 C -0.138 4.138 15 C -0.134 4.134 16 O -0.200 6.200 17 C -0.443 4.443 18 H 0.100 0.900 19 C -0.145 4.145 20 N -0.550 5.550 21 Si 0.732 3.268 22 H -0.206 1.206 23 H -0.216 1.216 24 H -0.187 1.187 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.317 4.492 12.088 18.538 hybrid contribution 0.505 -0.469 0.319 0.759 sum -12.812 4.023 12.407 18.283 Atomic orbital electron populations 1.21774 0.93185 1.02432 1.03231 1.22886 0.94848 0.81726 1.02224 1.86558 1.26007 1.31283 1.84796 1.25778 0.79790 0.94993 0.72501 1.90637 1.60173 1.42875 1.43368 1.21414 0.85790 0.87396 0.99382 0.89425 1.21543 1.01089 0.94848 0.96125 1.20606 1.03738 0.93809 0.93648 1.20053 0.94020 0.96932 0.96026 1.21100 0.96515 0.98203 0.97855 1.21103 0.99374 0.99935 0.93611 1.21080 0.94660 1.00576 0.98756 1.21135 0.96875 0.98158 0.97681 1.21198 0.99830 0.99337 0.93009 1.85413 1.13499 1.91377 1.29729 1.20419 0.92284 1.50487 0.81109 0.90042 1.24250 0.96177 0.97143 0.96918 1.69676 1.13178 1.52420 1.19705 0.86188 0.79108 0.78549 0.82919 1.20566 1.21642 1.18696 0.91729 0.91622 0.90776 0.91624 0.91802 0.90176 0.91000 0.89134 0.90602 0.86011 0.86426 0.86585 0.86379 0.85810 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.29 37.16 0.38 -1.14 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.37 -6.36 10.20 -39.24 -0.40 -6.77 16 4 C 0.43 8.98 7.24 36.00 0.26 9.24 16 5 O -0.49 -12.08 16.26 -25.47 -0.41 -12.49 16 6 C 0.12 2.48 2.67 -27.88 -0.07 2.41 16 7 H 0.09 1.69 7.80 -51.93 -0.41 1.29 16 8 C -0.10 -1.59 4.88 -26.73 -0.13 -1.72 16 9 C -0.08 -1.23 5.24 -27.89 -0.15 -1.38 16 10 C -0.07 -0.97 5.13 -104.62 -0.54 -1.50 16 11 C -0.12 -1.43 9.70 -39.58 -0.38 -1.81 16 12 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 13 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 14 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 15 C -0.12 -1.57 9.70 -39.58 -0.38 -1.95 16 16 O -0.29 -7.33 7.33 -36.42 -0.27 -7.60 16 17 C -0.37 -10.58 10.23 30.88 0.32 -10.26 16 18 H 0.08 2.46 7.88 -52.48 -0.41 2.05 16 19 C 0.05 1.59 5.49 -17.51 -0.10 1.49 16 20 N -0.91 -27.95 13.96 55.48 0.77 -27.17 16 21 Si 0.90 23.33 28.62 -169.99 -4.86 18.46 16 22 H -0.28 -7.33 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.26 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 31 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.09 1.59 7.77 -51.93 -0.40 1.18 16 33 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.27 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -33.91 341.68 -7.63 -41.53 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.85 Total: -0.18 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.76 Total: -10.93 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: 0.77 Total: -27.17 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -1.08 Total: -26.86 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.86 Total: 18.46 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.91 -7.63 -41.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.189 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds