Wall clock time and date at job start Mon Mar 30 2020 23:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.46884 * 2 1 4 4 C 1.34222 * 117.00137 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00432 * 179.71953 * 4 3 2 7 7 H 1.08999 * 109.47302 * 305.28263 * 6 4 3 8 8 C 1.53006 * 109.46811 * 65.27497 * 6 4 3 9 9 C 1.52995 * 109.47188 * 185.00079 * 8 6 4 10 10 C 1.50700 * 109.46968 * 180.02562 * 9 8 6 11 11 C 1.38233 * 119.99888 * 269.72326 * 10 9 8 12 12 C 1.38237 * 120.00042 * 179.76696 * 11 10 9 13 13 C 1.38243 * 119.99821 * 0.51144 * 12 11 10 14 14 C 1.38234 * 119.99773 * 359.74696 * 13 12 11 15 15 C 1.38235 * 119.99887 * 90.00331 * 10 9 8 16 16 O 1.42890 * 109.47562 * 185.27468 * 6 4 3 17 17 C 1.34931 * 116.99914 * 90.00261 * 16 6 4 18 18 H 1.08004 * 119.99918 * 0.02562 * 17 16 6 19 19 C 1.38639 * 119.99933 * 180.02562 * 17 16 6 20 20 N 1.31583 * 119.99954 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00353 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46890 * 89.99904 * 21 19 17 23 23 H 1.48492 * 109.47451 * 210.00446 * 21 19 17 24 24 H 1.48508 * 109.47044 * 330.00438 * 21 19 17 25 25 H 1.08997 * 109.47361 * 299.99753 * 1 2 3 26 26 H 1.08997 * 109.47194 * 60.00322 * 1 2 3 27 27 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46911 * 239.99959 * 2 1 3 29 29 H 1.08997 * 109.46745 * 119.99968 * 2 1 3 30 30 H 1.09000 * 109.47380 * 305.00748 * 8 6 4 31 31 H 1.09010 * 109.46720 * 65.00355 * 8 6 4 32 32 H 1.09005 * 109.47082 * 299.99994 * 9 8 6 33 33 H 1.08995 * 109.47454 * 60.00210 * 9 8 6 34 34 H 1.07993 * 120.00054 * 0.02562 * 11 10 9 35 35 H 1.08002 * 120.00470 * 180.23611 * 12 11 10 36 36 H 1.07991 * 120.00252 * 179.72302 * 13 12 11 37 37 H 1.07997 * 119.99922 * 179.97438 * 14 13 12 38 38 H 1.08003 * 120.00109 * 359.97438 * 15 10 9 39 39 H 0.96994 * 120.00669 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 -0.0058 7 1 3.5119 3.4959 -0.8479 8 6 3.5566 3.6458 1.3006 9 6 4.0332 5.0985 1.2430 10 6 3.6752 5.7960 2.5300 11 6 2.4616 6.4472 2.6488 12 6 2.1312 7.0830 3.8310 13 6 3.0188 7.0765 4.8908 14 6 4.2345 6.4298 4.7701 15 6 4.5628 5.7895 3.5897 16 8 5.3425 2.8643 -0.1278 17 6 5.8511 2.8693 -1.3775 18 1 5.1898 2.9272 -2.2295 19 6 7.2226 2.8001 -1.5680 20 7 7.7187 2.8054 -2.7867 21 14 8.3664 2.7007 -0.0945 22 1 8.5940 1.2768 0.2602 23 1 9.6636 3.3406 -0.4307 24 1 7.7508 3.4058 1.0584 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.4754 3.6232 1.4372 31 1 4.0390 3.1380 2.1359 32 1 5.1144 5.1211 1.1065 33 1 3.5509 5.6064 0.4078 34 1 1.7700 6.4558 1.8195 35 1 1.1814 7.5885 3.9252 36 1 2.7625 7.5769 5.8128 37 1 4.9281 6.4251 5.5979 38 1 5.5126 5.2843 3.4955 39 1 8.6782 2.7574 -2.9201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224377975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:44 Heat of formation + Delta-G solvation = -128.405098 kcal Electronic energy + Delta-G solvation = -21356.302616 eV Core-core repulsion = 18035.397550 eV Total energy + Delta-G solvation = -3320.905067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60606 -40.13878 -38.93445 -37.39254 -35.49609 -34.04830 -32.76412 -31.69612 -31.51417 -28.13897 -26.43769 -24.54011 -23.47754 -23.37228 -21.84311 -21.67016 -20.03782 -18.84817 -18.08271 -17.62181 -17.50860 -17.04741 -16.22310 -16.04793 -15.72790 -15.45404 -14.81179 -14.77387 -14.39564 -14.21672 -14.07374 -13.87458 -13.83767 -13.57788 -13.26969 -12.97750 -12.82525 -12.58159 -12.50987 -12.44650 -12.19199 -11.97844 -11.73777 -11.70866 -11.54909 -11.47455 -11.19019 -10.46190 -9.75031 -9.52782 -8.32358 -6.03411 0.50747 0.57102 1.17851 1.31999 1.38602 1.54024 1.64504 2.39180 2.94463 3.03617 3.19395 3.61530 3.87582 3.97737 4.00266 4.09292 4.11348 4.23115 4.29467 4.32633 4.38109 4.40214 4.55153 4.72385 4.73241 4.81707 4.88345 4.92700 5.05749 5.12702 5.16179 5.26225 5.35168 5.42746 5.47657 5.65177 5.68716 5.84127 6.04760 6.20568 6.77147 7.05983 7.62915 8.82815 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.006580 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.958839 B = 4254.137567 C = 6482.959661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.046 3.954 3 O -0.356 6.356 4 C 0.435 3.565 5 O -0.532 6.532 6 C 0.111 3.889 7 H 0.098 0.902 8 C -0.085 4.085 9 C -0.074 4.074 10 C -0.088 4.088 11 C -0.124 4.124 12 C -0.122 4.122 13 C -0.131 4.131 14 C -0.127 4.127 15 C -0.138 4.138 16 O -0.303 6.303 17 C -0.357 4.357 18 H 0.055 0.945 19 C -0.003 4.003 20 N -0.946 5.946 21 Si 0.963 3.037 22 H -0.286 1.286 23 H -0.274 1.274 24 H -0.253 1.253 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.062 5.816 14.226 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 O -0.274 6.274 4 C 0.278 3.722 5 O -0.421 6.421 6 C 0.050 3.950 7 H 0.115 0.885 8 C -0.123 4.123 9 C -0.111 4.111 10 C -0.088 4.088 11 C -0.141 4.141 12 C -0.140 4.140 13 C -0.149 4.149 14 C -0.145 4.145 15 C -0.157 4.157 16 O -0.218 6.218 17 C -0.435 4.435 18 H 0.073 0.927 19 C -0.198 4.198 20 N -0.592 5.592 21 Si 0.788 3.212 22 H -0.212 1.212 23 H -0.199 1.199 24 H -0.177 1.177 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.129 0.871 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.129 0.871 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.609 5.491 14.314 21.879 hybrid contribution 0.979 -0.788 -0.352 1.306 sum -14.630 4.703 13.962 20.763 Atomic orbital electron populations 1.21797 0.89356 1.04471 1.03979 1.23311 0.97747 0.79798 1.01908 1.86526 1.23560 1.33433 1.83836 1.25630 0.80775 0.94447 0.71352 1.90619 1.61492 1.44178 1.45792 1.21838 0.83320 0.87742 1.02078 0.88487 1.21535 1.02736 0.94845 0.93140 1.20474 1.01787 0.93500 0.95384 1.19939 0.95298 0.98349 0.95217 1.21318 0.95948 0.97796 0.99074 1.21480 1.00456 0.99139 0.92887 1.21473 0.93911 0.99639 0.99878 1.21382 0.97878 0.97785 0.97417 1.21266 0.99703 1.00528 0.94158 1.85348 1.16805 1.91866 1.27751 1.20352 0.92201 1.49281 0.81689 0.92691 1.25052 0.97830 0.97371 0.99515 1.69770 1.13774 1.54143 1.21542 0.85299 0.77778 0.78177 0.79964 1.21201 1.19931 1.17730 0.90602 0.91217 0.88078 0.92643 0.91653 0.87131 0.91869 0.92240 0.89567 0.84409 0.83563 0.83781 0.84686 0.87116 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 10.29 71.98 0.74 -1.69 16 2 C 0.05 1.26 6.19 71.98 0.45 1.71 16 3 O -0.36 -11.96 10.20 -51.34 -0.52 -12.48 16 4 C 0.43 18.35 7.24 71.23 0.52 18.86 16 5 O -0.53 -27.06 16.26 28.36 0.46 -26.59 16 6 C 0.11 4.55 2.67 29.85 0.08 4.63 16 7 H 0.10 3.79 7.80 -2.39 -0.02 3.77 16 8 C -0.09 -2.71 4.88 30.59 0.15 -2.56 16 9 C -0.07 -2.24 5.24 29.85 0.16 -2.09 16 10 C -0.09 -2.33 5.13 -19.87 -0.10 -2.43 16 11 C -0.12 -2.66 9.70 22.27 0.22 -2.44 16 12 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 13 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 14 C -0.13 -2.73 10.05 22.27 0.22 -2.50 16 15 C -0.14 -3.68 9.70 22.27 0.22 -3.46 16 16 O -0.30 -15.90 7.33 -62.97 -0.46 -16.36 16 17 C -0.36 -21.34 10.23 67.92 0.69 -20.64 16 18 H 0.06 3.48 7.88 -2.91 -0.02 3.46 16 19 C 0.00 -0.21 5.49 84.83 0.47 0.26 16 20 N -0.95 -59.91 13.96 21.61 0.30 -59.60 16 21 Si 0.96 48.94 28.62 68.60 1.96 50.90 16 22 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 23 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.25 -12.35 7.11 99.48 0.71 -11.64 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 29 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 30 H 0.11 2.83 8.12 -2.39 -0.02 2.81 16 31 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.06 2.15 7.77 -2.38 -0.02 2.14 16 33 H 0.09 2.36 8.08 -2.39 -0.02 2.34 16 34 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.14 1.79 8.06 -2.92 -0.02 1.77 16 37 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.11 3.11 8.06 -2.91 -0.02 3.08 16 39 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -75.24 341.68 7.01 -68.23 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.02 Total: 12.42 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 4.25 Total: -16.52 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.30 Total: -59.60 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -0.52 Total: -55.43 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 1.96 Total: 50.90 kcal Total: -75.24 7.01 -68.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.172 kcal (2) G-P(sol) polarization free energy of solvation -75.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds