Wall clock time and date at job start Mon Mar 30 2020 23:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.46815 * 2 1 4 4 C 1.34234 * 116.99784 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99842 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99925 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.46762 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47411 * 54.43475 * 7 6 4 9 9 C 1.50705 * 109.46975 * 174.43335 * 7 6 4 10 10 H 1.08005 * 120.00117 * 245.37924 * 9 7 6 11 11 C 1.37877 * 119.99727 * 65.37417 * 9 7 6 12 12 N 1.31512 * 120.00158 * 355.12941 * 11 9 7 13 13 Si 1.86805 * 119.99733 * 175.13165 * 11 9 7 14 14 H 1.48494 * 109.47308 * 94.99473 * 13 11 9 15 15 H 1.48499 * 109.46675 * 214.99826 * 13 11 9 16 16 H 1.48504 * 109.47073 * 334.99344 * 13 11 9 17 17 O 1.42896 * 109.47444 * 294.43304 * 7 6 4 18 18 C 1.35899 * 117.00182 * 155.29074 * 17 7 6 19 19 C 1.38758 * 120.05617 * 5.49974 * 18 17 7 20 20 C 1.38125 * 119.94262 * 179.70235 * 19 18 17 21 21 C 1.38279 * 120.05338 * 0.59538 * 20 19 18 22 22 C 1.38250 * 120.11604 * 359.68511 * 21 20 19 23 23 C 1.38165 * 120.05493 * 0.02562 * 22 21 20 24 24 C 1.50695 * 120.03184 * 180.02562 * 23 22 21 25 25 H 1.09000 * 109.47225 * 300.00237 * 1 2 3 26 26 H 1.09002 * 109.47285 * 60.00060 * 1 2 3 27 27 H 1.09001 * 109.46983 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47225 * 239.99763 * 2 1 3 29 29 H 1.08998 * 109.46804 * 119.99864 * 2 1 3 30 30 H 1.08996 * 109.47248 * 299.99925 * 6 4 3 31 31 H 1.09000 * 109.47394 * 60.00412 * 6 4 3 32 32 H 0.97006 * 119.99831 * 180.02562 * 12 11 9 33 33 H 1.08000 * 120.02163 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.96640 * 180.30237 * 20 19 18 35 35 H 1.07998 * 119.94369 * 179.70189 * 21 20 19 36 36 H 1.07999 * 119.97269 * 180.02562 * 22 21 20 37 37 H 1.09002 * 109.47299 * 269.98435 * 24 23 22 38 38 H 1.09008 * 109.46747 * 29.97867 * 24 23 22 39 39 H 1.08997 * 109.47485 * 149.98003 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8574 0.0014 8 1 5.7809 2.2408 -0.8338 9 6 6.0244 4.2432 -0.1370 10 1 6.5873 4.5084 -1.0197 11 6 5.8325 5.1724 0.8634 12 7 5.0678 4.8817 1.8931 13 14 6.6588 6.8444 0.7560 14 1 5.7189 7.8232 0.1531 15 1 7.0385 7.2971 2.1184 16 1 7.8759 6.7417 -0.0886 17 8 5.8941 2.2769 1.2288 18 6 7.1063 1.6628 1.2167 19 6 7.9020 1.7179 0.0813 20 6 9.1364 1.0981 0.0737 21 6 9.5740 0.4127 1.1921 22 6 8.7807 0.3514 2.3227 23 6 7.5477 0.9747 2.3374 24 6 6.6836 0.9081 3.5702 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.5852 3.4691 -0.8904 31 1 3.5844 3.4702 0.8895 32 1 4.9325 5.5357 2.5967 33 1 7.5582 2.2487 -0.7942 34 1 9.7581 1.1449 -0.8082 35 1 10.5374 -0.0753 1.1826 36 1 9.1250 -0.1841 3.1950 37 1 6.0364 0.0328 3.5134 38 1 7.3171 0.8347 4.4543 39 1 6.0725 1.8083 3.6348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225218828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:08 Heat of formation + Delta-G solvation = -112.432181 kcal Electronic energy + Delta-G solvation = -22211.591018 eV Core-core repulsion = 18891.378589 eV Total energy + Delta-G solvation = -3320.212429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -39.83787 -39.01480 -36.69091 -35.75726 -33.17952 -31.91831 -31.59778 -30.35727 -28.82149 -26.32765 -25.94390 -23.35870 -22.47703 -21.05177 -20.60777 -19.60772 -17.52229 -17.05358 -16.18891 -16.00097 -15.47778 -14.93160 -14.77195 -14.57895 -13.91901 -13.75798 -13.50522 -12.99461 -12.83791 -12.52263 -12.34139 -12.09976 -11.98838 -11.68288 -11.50618 -11.41652 -11.24336 -11.04390 -10.94864 -10.85935 -10.51625 -10.48712 -10.20919 -10.13961 -9.70925 -9.30374 -9.15984 -8.71731 -8.00799 -6.96391 -6.22567 -4.41415 2.14443 2.40604 3.01355 3.18398 3.28074 3.30109 3.34339 4.25981 4.60457 4.65578 5.08346 5.12470 5.16463 5.38349 5.47592 5.57751 5.62523 5.83172 5.89431 5.92074 5.96258 6.07026 6.17065 6.32087 6.34819 6.36564 6.45058 6.52171 6.66874 6.74785 6.98083 7.00589 7.18713 7.27704 7.29756 7.44465 7.65137 7.77360 7.89003 8.48736 8.55484 8.94595 9.36165 10.79179 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.007711 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.690493 B = 3630.175283 C = 5271.628582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.456 3.544 5 O -0.513 6.513 6 C -0.099 4.099 7 C 0.225 3.775 8 H 0.032 0.968 9 C -0.563 4.563 10 H 0.067 0.933 11 C 0.088 3.912 12 N -0.855 5.855 13 Si 0.893 3.107 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.271 1.271 17 O -0.281 6.281 18 C 0.186 3.814 19 C -0.202 4.202 20 C -0.093 4.093 21 C -0.189 4.189 22 C -0.091 4.091 23 C -0.145 4.145 24 C -0.096 4.096 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.266 0.734 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 -6.661 -1.251 7.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.300 3.700 5 O -0.400 6.400 6 C -0.137 4.137 7 C 0.170 3.830 8 H 0.049 0.951 9 C -0.600 4.600 10 H 0.085 0.915 11 C -0.120 4.120 12 N -0.490 5.490 13 Si 0.720 3.280 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.195 1.195 17 O -0.193 6.193 18 C 0.137 3.863 19 C -0.221 4.221 20 C -0.111 4.111 21 C -0.207 4.207 22 C -0.109 4.109 23 C -0.146 4.146 24 C -0.152 4.152 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.154 0.846 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.951 -6.874 -0.916 7.536 hybrid contribution 0.586 0.815 -0.205 1.025 sum -2.365 -6.059 -1.121 6.600 Atomic orbital electron populations 1.21778 0.93314 1.02316 1.03313 1.22850 0.94832 0.81811 1.02028 1.86579 1.26195 1.30972 1.84762 1.24927 0.79480 0.94348 0.71253 1.90606 1.60174 1.43584 1.45668 1.21855 0.96837 0.88084 1.06909 1.19748 0.88443 0.92734 0.82044 0.95056 1.21394 1.36808 0.95852 1.05935 0.91453 1.24998 0.93712 0.98542 0.94723 1.69883 1.34805 1.35008 1.09315 0.86560 0.80113 0.83508 0.77815 1.20388 1.20864 1.19547 1.86184 1.29325 1.65761 1.37987 1.18837 0.86460 0.88660 0.92377 1.21358 0.96042 1.05089 0.99587 1.20800 0.95601 0.97100 0.97586 1.20689 1.00316 1.05091 0.94628 1.20628 0.93522 0.99033 0.97720 1.19202 0.96772 1.02810 0.95776 1.20477 0.98424 1.02621 0.93712 0.91604 0.91723 0.90852 0.91910 0.91744 0.87970 0.84647 0.92352 0.85145 0.87256 0.87464 0.86978 0.92682 0.93121 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.29 37.16 0.38 -1.24 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.74 10.22 -39.27 -0.40 -7.14 16 4 C 0.46 9.62 7.84 36.01 0.28 9.91 16 5 O -0.51 -11.94 15.18 -23.91 -0.36 -12.30 16 6 C -0.10 -2.19 5.28 -27.88 -0.15 -2.34 16 7 C 0.22 5.45 1.34 -27.88 -0.04 5.41 16 8 H 0.03 0.76 6.12 -51.93 -0.32 0.44 16 9 C -0.56 -14.32 7.95 -34.44 -0.27 -14.60 16 10 H 0.07 1.69 7.82 -52.48 -0.41 1.28 16 11 C 0.09 2.25 5.26 -17.82 -0.09 2.16 16 12 N -0.86 -22.46 11.04 55.43 0.61 -21.85 16 13 Si 0.89 20.12 29.54 -169.99 -5.02 15.09 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 O -0.28 -7.13 7.32 -33.26 -0.24 -7.37 16 18 C 0.19 4.40 6.56 -39.21 -0.26 4.15 16 19 C -0.20 -4.46 8.70 -39.43 -0.34 -4.80 16 20 C -0.09 -1.76 10.04 -39.61 -0.40 -2.16 16 21 C -0.19 -3.36 10.04 -39.56 -0.40 -3.76 16 22 C -0.09 -1.68 9.70 -39.60 -0.38 -2.07 16 23 C -0.14 -3.08 5.89 -104.48 -0.62 -3.70 16 24 C -0.10 -1.84 9.79 36.00 0.35 -1.49 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.10 2.04 8.14 -51.93 -0.42 1.62 16 31 H 0.14 3.24 6.47 -51.93 -0.34 2.90 16 32 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.13 2.91 5.68 -52.49 -0.30 2.61 16 34 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.83 8.09 -51.92 -0.42 0.41 16 39 H 0.07 1.63 7.53 -51.93 -0.39 1.23 16 LS Contribution 330.67 15.07 4.98 4.98 Total: -1.00 -28.86 330.67 -7.67 -36.53 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.54 Total: 5.49 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.70 Total: -13.44 kcal Atomic # 7 Polarization: -22.46 SS G_CDS: 0.61 Total: -21.85 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -1.01 Total: -26.81 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.86 -7.67 -36.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225218828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.899 kcal (2) G-P(sol) polarization free energy of solvation -28.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds