Wall clock time and date at job start Mon Mar 30 2020 23:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.46815 * 2 1 4 4 C 1.34234 * 116.99784 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99842 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99925 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.46762 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47411 * 54.43475 * 7 6 4 9 9 C 1.50705 * 109.46975 * 174.43335 * 7 6 4 10 10 H 1.08005 * 120.00117 * 245.37924 * 9 7 6 11 11 C 1.37877 * 119.99727 * 65.37417 * 9 7 6 12 12 N 1.31512 * 120.00158 * 355.12941 * 11 9 7 13 13 Si 1.86805 * 119.99733 * 175.13165 * 11 9 7 14 14 H 1.48494 * 109.47308 * 94.99473 * 13 11 9 15 15 H 1.48499 * 109.46675 * 214.99826 * 13 11 9 16 16 H 1.48504 * 109.47073 * 334.99344 * 13 11 9 17 17 O 1.42896 * 109.47444 * 294.43304 * 7 6 4 18 18 C 1.35899 * 117.00182 * 155.29074 * 17 7 6 19 19 C 1.38758 * 120.05617 * 5.49974 * 18 17 7 20 20 C 1.38125 * 119.94262 * 179.70235 * 19 18 17 21 21 C 1.38279 * 120.05338 * 0.59538 * 20 19 18 22 22 C 1.38250 * 120.11604 * 359.68511 * 21 20 19 23 23 C 1.38165 * 120.05493 * 0.02562 * 22 21 20 24 24 C 1.50695 * 120.03184 * 180.02562 * 23 22 21 25 25 H 1.09000 * 109.47225 * 300.00237 * 1 2 3 26 26 H 1.09002 * 109.47285 * 60.00060 * 1 2 3 27 27 H 1.09001 * 109.46983 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47225 * 239.99763 * 2 1 3 29 29 H 1.08998 * 109.46804 * 119.99864 * 2 1 3 30 30 H 1.08996 * 109.47248 * 299.99925 * 6 4 3 31 31 H 1.09000 * 109.47394 * 60.00412 * 6 4 3 32 32 H 0.97006 * 119.99831 * 180.02562 * 12 11 9 33 33 H 1.08000 * 120.02163 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.96640 * 180.30237 * 20 19 18 35 35 H 1.07998 * 119.94369 * 179.70189 * 21 20 19 36 36 H 1.07999 * 119.97269 * 180.02562 * 22 21 20 37 37 H 1.09002 * 109.47299 * 269.98435 * 24 23 22 38 38 H 1.09008 * 109.46747 * 29.97867 * 24 23 22 39 39 H 1.08997 * 109.47485 * 149.98003 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8574 0.0014 8 1 5.7809 2.2408 -0.8338 9 6 6.0244 4.2432 -0.1370 10 1 6.5873 4.5084 -1.0197 11 6 5.8325 5.1724 0.8634 12 7 5.0678 4.8817 1.8931 13 14 6.6588 6.8444 0.7560 14 1 5.7189 7.8232 0.1531 15 1 7.0385 7.2971 2.1184 16 1 7.8759 6.7417 -0.0886 17 8 5.8941 2.2769 1.2288 18 6 7.1063 1.6628 1.2167 19 6 7.9020 1.7179 0.0813 20 6 9.1364 1.0981 0.0737 21 6 9.5740 0.4127 1.1921 22 6 8.7807 0.3514 2.3227 23 6 7.5477 0.9747 2.3374 24 6 6.6836 0.9081 3.5702 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.5852 3.4691 -0.8904 31 1 3.5844 3.4702 0.8895 32 1 4.9325 5.5357 2.5967 33 1 7.5582 2.2487 -0.7942 34 1 9.7581 1.1449 -0.8082 35 1 10.5374 -0.0753 1.1826 36 1 9.1250 -0.1841 3.1950 37 1 6.0364 0.0328 3.5134 38 1 7.3171 0.8347 4.4543 39 1 6.0725 1.8083 3.6348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225218828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:05 Heat of formation + Delta-G solvation = -126.372963 kcal Electronic energy + Delta-G solvation = -22212.195536 eV Core-core repulsion = 18891.378589 eV Total energy + Delta-G solvation = -3320.816947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.48539 -40.63259 -38.32135 -37.38149 -35.04383 -33.50840 -32.89038 -31.98582 -30.40854 -28.18056 -27.48867 -24.93111 -23.86820 -22.62350 -22.17194 -21.29086 -19.28966 -18.71951 -17.88086 -17.51543 -17.20191 -16.64700 -16.36921 -16.20571 -15.47779 -15.35953 -14.99902 -14.51710 -14.35306 -13.87677 -13.74972 -13.64181 -13.58639 -13.19675 -13.03263 -12.94371 -12.83301 -12.64435 -12.59983 -12.46391 -12.22544 -12.02008 -11.89140 -11.49705 -11.44439 -11.11230 -10.98087 -10.65209 -9.55016 -8.63692 -8.15741 -6.41208 0.59049 0.84444 1.31258 1.39659 1.43608 1.52184 1.83303 2.38385 2.85745 3.07350 3.25623 3.95076 4.00195 4.11906 4.12734 4.14964 4.34179 4.36300 4.50991 4.52111 4.55997 4.65935 4.81031 4.85279 4.89886 4.92442 4.93630 5.02259 5.13512 5.14076 5.32412 5.47434 5.52371 5.67684 5.70852 5.75775 5.86684 5.97284 6.23080 6.57061 6.87672 7.13229 7.40564 8.84393 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.007711 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.690493 B = 3630.175283 C = 5271.628582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.463 3.537 5 O -0.538 6.538 6 C -0.095 4.095 7 C 0.226 3.774 8 H 0.020 0.980 9 C -0.575 4.575 10 H 0.061 0.939 11 C 0.049 3.951 12 N -0.877 5.877 13 Si 0.950 3.050 14 H -0.266 1.266 15 H -0.286 1.286 16 H -0.273 1.273 17 O -0.302 6.302 18 C 0.141 3.859 19 C -0.225 4.225 20 C -0.095 4.095 21 C -0.178 4.178 22 C -0.087 4.087 23 C -0.168 4.168 24 C -0.088 4.088 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.266 0.734 33 H 0.114 0.886 34 H 0.139 0.861 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 -7.671 -1.007 7.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.284 6.284 4 C 0.309 3.691 5 O -0.428 6.428 6 C -0.133 4.133 7 C 0.172 3.828 8 H 0.038 0.962 9 C -0.612 4.612 10 H 0.080 0.920 11 C -0.156 4.156 12 N -0.513 5.513 13 Si 0.775 3.225 14 H -0.191 1.191 15 H -0.211 1.211 16 H -0.198 1.198 17 O -0.215 6.215 18 C 0.093 3.907 19 C -0.244 4.244 20 C -0.113 4.113 21 C -0.196 4.196 22 C -0.105 4.105 23 C -0.168 4.168 24 C -0.144 4.144 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.122 0.878 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.054 -7.886 -0.683 8.178 hybrid contribution 0.340 0.992 -0.292 1.088 sum -1.713 -6.895 -0.974 7.171 Atomic orbital electron populations 1.21807 0.89871 1.04447 1.03704 1.23274 0.97480 0.79718 1.02021 1.86550 1.24278 1.33524 1.84055 1.24568 0.80341 0.93511 0.70725 1.90586 1.61047 1.44164 1.46981 1.21678 0.95933 0.88953 1.06706 1.19666 0.89449 0.91937 0.81777 0.96249 1.21553 1.36978 0.96718 1.05910 0.92040 1.25605 0.94196 1.01354 0.94445 1.69995 1.35684 1.35835 1.09755 0.85686 0.79226 0.80202 0.77404 1.19130 1.21129 1.19812 1.86130 1.30583 1.66719 1.38036 1.19344 0.86597 0.90575 0.94148 1.21410 0.97644 1.06462 0.98861 1.21183 0.94533 0.96181 0.99398 1.21202 1.01532 1.03418 0.93407 1.21090 0.92099 0.97914 0.99356 1.19621 0.98350 1.03242 0.95627 1.20409 0.98427 1.01083 0.94514 0.91518 0.91017 0.87795 0.91514 0.92280 0.86443 0.86450 0.92422 0.86821 0.84340 0.83226 0.83213 0.92268 0.89925 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 10.29 71.98 0.74 -2.04 16 2 C 0.05 1.40 6.19 71.98 0.45 1.84 16 3 O -0.37 -13.58 10.22 -51.46 -0.53 -14.10 16 4 C 0.46 20.22 7.84 71.24 0.56 20.78 16 5 O -0.54 -25.94 15.18 26.88 0.41 -25.53 16 6 C -0.10 -4.38 5.28 29.85 0.16 -4.22 16 7 C 0.23 11.52 1.34 29.85 0.04 11.56 16 8 H 0.02 1.01 6.12 -2.39 -0.01 0.99 16 9 C -0.57 -30.31 7.95 25.60 0.20 -30.11 16 10 H 0.06 3.21 7.82 -2.91 -0.02 3.18 16 11 C 0.05 2.58 5.26 84.66 0.44 3.02 16 12 N -0.88 -47.49 11.04 21.45 0.24 -47.26 16 13 Si 0.95 41.85 29.54 68.60 2.03 43.87 16 14 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 15 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 O -0.30 -16.05 7.32 -79.18 -0.58 -16.63 16 18 C 0.14 6.89 6.56 22.51 0.15 7.03 16 19 C -0.22 -10.14 8.70 22.37 0.19 -9.95 16 20 C -0.09 -3.45 10.04 22.25 0.22 -3.23 16 21 C -0.18 -5.70 10.04 22.28 0.22 -5.47 16 22 C -0.09 -2.96 9.70 22.26 0.22 -2.75 16 23 C -0.17 -7.08 5.89 -19.77 -0.12 -7.20 16 24 C -0.09 -3.37 9.79 71.23 0.70 -2.68 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.87 8.13 -2.39 -0.02 1.85 16 29 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 30 H 0.12 4.87 8.14 -2.39 -0.02 4.85 16 31 H 0.12 5.89 6.47 -2.39 -0.02 5.87 16 32 H 0.27 13.76 8.31 -92.70 -0.77 12.99 16 33 H 0.11 5.36 5.68 -2.91 -0.02 5.34 16 34 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 35 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 36 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.08 2.56 8.09 -2.38 -0.02 2.54 16 39 H 0.04 1.86 7.53 -2.39 -0.02 1.84 16 Total: -1.00 -64.61 330.67 6.78 -57.83 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 1.04 Total: 25.22 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 4.18 Total: -23.40 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.24 Total: -47.26 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -0.70 Total: -56.27 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -64.61 6.78 -57.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225218828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.546 kcal (2) G-P(sol) polarization free energy of solvation -64.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds