Wall clock time and date at job start Mon Mar 30 2020 23:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45195 * 109.47281 * 2 1 4 4 C 1.34229 * 116.99853 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99980 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00151 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.47540 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47126 * 54.99818 * 7 6 4 9 9 C 1.50697 * 109.47286 * 175.00350 * 7 6 4 10 10 H 1.07999 * 119.99574 * 239.99975 * 9 7 6 11 11 C 1.37878 * 120.00161 * 60.00156 * 9 7 6 12 12 N 1.31510 * 119.99592 * 359.97438 * 11 9 7 13 13 Si 1.86791 * 120.00051 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47580 * 89.99584 * 13 11 9 15 15 H 1.48503 * 109.47268 * 209.99715 * 13 11 9 16 16 H 1.48501 * 109.47134 * 329.99827 * 13 11 9 17 17 O 1.42903 * 109.47065 * 295.00502 * 7 6 4 18 18 C 1.35901 * 117.00424 * 155.88822 * 17 7 6 19 19 C 1.38730 * 120.05051 * 5.41169 * 18 17 7 20 20 C 1.38146 * 119.94220 * 179.97438 * 19 18 17 21 21 C 1.38269 * 120.05227 * 0.27644 * 20 19 18 22 22 C 1.50703 * 119.93975 * 179.72676 * 21 20 19 23 23 C 1.38260 * 120.11236 * 359.44696 * 21 20 19 24 24 C 1.38142 * 120.05812 * 0.55465 * 23 21 20 25 25 H 1.08996 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46674 * 300.00435 * 1 2 3 27 27 H 1.09002 * 109.46969 * 60.00143 * 1 2 3 28 28 H 1.08993 * 109.46966 * 239.99150 * 2 1 3 29 29 H 1.09003 * 109.46520 * 119.99567 * 2 1 3 30 30 H 1.09000 * 109.46688 * 59.99854 * 6 4 3 31 31 H 1.09000 * 109.47391 * 300.00550 * 6 4 3 32 32 H 0.97008 * 119.99811 * 180.02562 * 12 11 9 33 33 H 1.07994 * 120.03048 * 0.02562 * 19 18 17 34 34 H 1.07996 * 119.97571 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.47230 * 90.00024 * 22 21 20 36 36 H 1.09000 * 109.46928 * 209.99546 * 22 21 20 37 37 H 1.09001 * 109.47324 * 329.99974 * 22 21 20 38 38 H 1.08007 * 119.97353 * 180.25536 * 23 21 20 39 39 H 1.07997 * 120.03329 * 179.74180 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9372 0.0000 7 6 5.4488 2.8572 0.0001 8 1 5.7808 2.2491 -0.8414 9 6 6.0246 4.2442 -0.1242 10 1 6.6594 4.4923 -0.9619 11 6 5.7409 5.1966 0.8316 12 7 4.9675 4.8946 1.8515 13 14 6.4540 6.9161 0.6772 14 1 5.5191 7.7723 -0.0964 15 1 6.6497 7.4944 2.0309 16 1 7.7603 6.8490 -0.0259 17 8 5.8946 2.2640 1.2214 18 6 7.1124 1.6610 1.2061 19 6 7.9110 1.7370 0.0743 20 6 9.1488 1.1236 0.0613 21 6 9.5893 0.4295 1.1730 22 6 10.9373 -0.2439 1.1539 23 6 8.7976 0.3571 2.3042 24 6 7.5591 0.9687 2.3223 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.5845 3.4699 0.8895 31 1 3.5854 3.4690 -0.8904 32 1 4.7676 5.5648 2.5238 33 1 7.5659 2.2760 -0.7956 34 1 9.7711 1.1829 -0.8193 35 1 11.6960 0.4515 1.5130 36 1 10.9142 -1.1216 1.7998 37 1 11.1769 -0.5486 0.1351 38 1 9.1456 -0.1823 3.1728 39 1 6.9392 0.9083 3.2046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225258200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:17 Heat of formation + Delta-G solvation = -113.490846 kcal Electronic energy + Delta-G solvation = -21817.666199 eV Core-core repulsion = 18497.407863 eV Total energy + Delta-G solvation = -3320.258336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.82558 -38.96715 -36.86668 -35.81678 -33.30891 -31.59992 -31.22407 -30.27373 -29.94661 -26.34738 -25.55672 -23.29011 -22.50309 -21.45698 -20.46973 -19.61861 -17.60942 -17.07167 -16.19315 -15.99481 -15.49157 -14.91049 -14.65810 -14.50802 -13.94660 -13.68029 -13.45897 -13.13186 -12.98596 -12.68579 -12.55829 -12.32958 -12.16019 -11.79870 -11.56370 -11.42050 -11.24024 -11.02999 -10.89487 -10.88355 -10.66930 -10.42048 -10.17789 -10.13181 -9.70289 -9.31699 -9.09371 -8.74956 -8.19508 -6.93584 -6.23017 -4.43672 2.16264 2.34047 3.02278 3.18087 3.27349 3.29697 3.34010 4.24791 4.59926 4.63411 5.09025 5.13314 5.17117 5.38986 5.47062 5.48116 5.48677 5.72920 5.84480 5.90069 5.92564 5.94850 6.07606 6.13271 6.18693 6.31813 6.37846 6.43559 6.56272 6.73115 6.88952 6.99381 7.12572 7.22636 7.32333 7.43460 7.65345 7.74502 7.88561 8.49049 8.56350 8.94230 9.34370 10.78027 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010805 B = 0.007138 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.798939 B = 3921.949870 C = 6018.701122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.456 3.544 5 O -0.514 6.514 6 C -0.101 4.101 7 C 0.225 3.775 8 H 0.032 0.968 9 C -0.561 4.561 10 H 0.068 0.932 11 C 0.085 3.915 12 N -0.858 5.858 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.271 1.271 17 O -0.289 6.289 18 C 0.183 3.817 19 C -0.201 4.201 20 C -0.085 4.085 21 C -0.164 4.164 22 C -0.097 4.097 23 C -0.086 4.086 24 C -0.176 4.176 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.140 0.860 31 H 0.102 0.898 32 H 0.267 0.733 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.113 0.887 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 -7.021 -2.091 7.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.300 3.700 5 O -0.401 6.401 6 C -0.139 4.139 7 C 0.170 3.830 8 H 0.050 0.950 9 C -0.597 4.597 10 H 0.086 0.914 11 C -0.122 4.122 12 N -0.493 5.493 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.196 1.196 17 O -0.200 6.200 18 C 0.134 3.866 19 C -0.220 4.220 20 C -0.103 4.103 21 C -0.165 4.165 22 C -0.154 4.154 23 C -0.104 4.104 24 C -0.194 4.194 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.352 -7.238 -1.771 7.573 hybrid contribution 0.390 0.882 -0.135 0.974 sum -0.962 -6.356 -1.906 6.705 Atomic orbital electron populations 1.21778 0.93310 1.02315 1.03316 1.22852 0.94836 0.81812 1.02038 1.86574 1.26174 1.30971 1.84766 1.24905 0.79483 0.94330 0.71236 1.90602 1.60183 1.43602 1.45730 1.21835 0.96691 0.88131 1.07196 1.19768 0.88599 0.92490 0.82107 0.95025 1.21408 1.32890 0.95014 1.10430 0.91422 1.25035 0.93775 0.99005 0.94370 1.69864 1.34289 1.34370 1.10794 0.86529 0.79825 0.83645 0.77726 1.20235 1.20897 1.19572 1.86211 1.29017 1.65988 1.38809 1.19012 0.86239 0.88608 0.92729 1.21355 0.95875 1.05022 0.99731 1.20700 0.95512 0.96846 0.97229 1.19506 0.97495 1.04250 0.95206 1.20572 0.94207 0.99203 1.01442 1.20579 0.93560 0.99195 0.97037 1.20346 0.97542 1.03241 0.98314 0.90849 0.91601 0.91721 0.91900 0.91736 0.84228 0.87988 0.92268 0.85140 0.87215 0.92476 0.92597 0.92574 0.86936 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.26 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.82 10.22 -39.25 -0.40 -7.22 16 4 C 0.46 9.77 7.84 36.01 0.28 10.05 16 5 O -0.51 -12.09 15.17 -24.05 -0.36 -12.46 16 6 C -0.10 -2.26 5.22 -27.88 -0.15 -2.41 16 7 C 0.22 5.51 1.35 -27.89 -0.04 5.47 16 8 H 0.03 0.77 6.18 -51.93 -0.32 0.45 16 9 C -0.56 -14.36 7.92 -34.44 -0.27 -14.63 16 10 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 11 C 0.09 2.20 5.24 -17.82 -0.09 2.11 16 12 N -0.86 -22.77 10.93 55.43 0.61 -22.17 16 13 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 O -0.29 -7.49 8.43 -33.85 -0.29 -7.78 16 18 C 0.18 4.37 6.59 -39.22 -0.26 4.11 16 19 C -0.20 -4.43 8.69 -39.43 -0.34 -4.77 16 20 C -0.08 -1.60 9.69 -39.60 -0.38 -1.99 16 21 C -0.16 -2.90 5.88 -104.60 -0.62 -3.51 16 22 C -0.10 -1.31 10.01 36.01 0.36 -0.95 16 23 C -0.09 -1.57 9.69 -39.61 -0.38 -1.95 16 24 C -0.18 -3.75 9.99 -39.43 -0.39 -4.15 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 29 H 0.06 0.98 8.13 -51.93 -0.42 0.55 16 30 H 0.14 3.39 6.22 -51.93 -0.32 3.07 16 31 H 0.10 2.06 8.14 -51.93 -0.42 1.64 16 32 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.13 2.91 5.67 -52.49 -0.30 2.61 16 34 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -29.27 331.71 -7.69 -36.97 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.55 Total: 5.35 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -1.67 Total: -12.77 kcal Atomic # 7 Polarization: -22.77 SS G_CDS: 0.61 Total: -22.17 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -1.05 Total: -27.45 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.27 -7.69 -36.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225258200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.524 kcal (2) G-P(sol) polarization free energy of solvation -29.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds