Wall clock time and date at job start Mon Mar 30 2020 23:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45195 * 109.47281 * 2 1 4 4 C 1.34229 * 116.99853 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99980 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00151 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.47540 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47126 * 54.99818 * 7 6 4 9 9 C 1.50697 * 109.47286 * 175.00350 * 7 6 4 10 10 H 1.07999 * 119.99574 * 239.99975 * 9 7 6 11 11 C 1.37878 * 120.00161 * 60.00156 * 9 7 6 12 12 N 1.31510 * 119.99592 * 359.97438 * 11 9 7 13 13 Si 1.86791 * 120.00051 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47580 * 89.99584 * 13 11 9 15 15 H 1.48503 * 109.47268 * 209.99715 * 13 11 9 16 16 H 1.48501 * 109.47134 * 329.99827 * 13 11 9 17 17 O 1.42903 * 109.47065 * 295.00502 * 7 6 4 18 18 C 1.35901 * 117.00424 * 155.88822 * 17 7 6 19 19 C 1.38730 * 120.05051 * 5.41169 * 18 17 7 20 20 C 1.38146 * 119.94220 * 179.97438 * 19 18 17 21 21 C 1.38269 * 120.05227 * 0.27644 * 20 19 18 22 22 C 1.50703 * 119.93975 * 179.72676 * 21 20 19 23 23 C 1.38260 * 120.11236 * 359.44696 * 21 20 19 24 24 C 1.38142 * 120.05812 * 0.55465 * 23 21 20 25 25 H 1.08996 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46674 * 300.00435 * 1 2 3 27 27 H 1.09002 * 109.46969 * 60.00143 * 1 2 3 28 28 H 1.08993 * 109.46966 * 239.99150 * 2 1 3 29 29 H 1.09003 * 109.46520 * 119.99567 * 2 1 3 30 30 H 1.09000 * 109.46688 * 59.99854 * 6 4 3 31 31 H 1.09000 * 109.47391 * 300.00550 * 6 4 3 32 32 H 0.97008 * 119.99811 * 180.02562 * 12 11 9 33 33 H 1.07994 * 120.03048 * 0.02562 * 19 18 17 34 34 H 1.07996 * 119.97571 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.47230 * 90.00024 * 22 21 20 36 36 H 1.09000 * 109.46928 * 209.99546 * 22 21 20 37 37 H 1.09001 * 109.47324 * 329.99974 * 22 21 20 38 38 H 1.08007 * 119.97353 * 180.25536 * 23 21 20 39 39 H 1.07997 * 120.03329 * 179.74180 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9372 0.0000 7 6 5.4488 2.8572 0.0001 8 1 5.7808 2.2491 -0.8414 9 6 6.0246 4.2442 -0.1242 10 1 6.6594 4.4923 -0.9619 11 6 5.7409 5.1966 0.8316 12 7 4.9675 4.8946 1.8515 13 14 6.4540 6.9161 0.6772 14 1 5.5191 7.7723 -0.0964 15 1 6.6497 7.4944 2.0309 16 1 7.7603 6.8490 -0.0259 17 8 5.8946 2.2640 1.2214 18 6 7.1124 1.6610 1.2061 19 6 7.9110 1.7370 0.0743 20 6 9.1488 1.1236 0.0613 21 6 9.5893 0.4295 1.1730 22 6 10.9373 -0.2439 1.1539 23 6 8.7976 0.3571 2.3042 24 6 7.5591 0.9687 2.3223 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.5845 3.4699 0.8895 31 1 3.5854 3.4690 -0.8904 32 1 4.7676 5.5648 2.5238 33 1 7.5659 2.2760 -0.7956 34 1 9.7711 1.1829 -0.8193 35 1 11.6960 0.4515 1.5130 36 1 10.9142 -1.1216 1.7998 37 1 11.1769 -0.5486 0.1351 38 1 9.1456 -0.1823 3.1728 39 1 6.9392 0.9083 3.2046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225258200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:16 Heat of formation + Delta-G solvation = -127.930408 kcal Electronic energy + Delta-G solvation = -21818.292345 eV Core-core repulsion = 18497.407863 eV Total energy + Delta-G solvation = -3320.884483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49176 -40.59867 -38.50325 -37.44309 -35.17967 -33.03757 -32.59004 -31.86074 -31.55687 -28.20654 -26.94852 -24.83073 -23.95195 -22.99829 -22.02718 -21.31575 -19.40130 -18.76442 -17.91415 -17.52682 -17.24426 -16.63219 -16.32960 -16.03086 -15.42225 -15.36640 -14.93383 -14.50156 -14.35407 -14.20432 -13.86030 -13.82270 -13.63188 -13.25791 -12.97191 -12.85393 -12.77099 -12.60764 -12.58270 -12.46441 -12.17502 -12.07832 -11.85631 -11.50509 -11.45428 -11.13369 -10.90054 -10.69216 -9.76724 -8.60150 -8.16809 -6.44770 0.58186 0.77584 1.30193 1.40693 1.43615 1.52500 1.82586 2.37752 2.81820 3.04070 3.26076 3.94439 3.99661 4.07799 4.12492 4.15144 4.26636 4.33845 4.47692 4.54426 4.60907 4.64666 4.70693 4.87859 4.92041 4.96140 4.98159 5.03879 5.12954 5.22151 5.31446 5.35414 5.50610 5.57023 5.67371 5.81947 5.82764 5.95655 6.19751 6.55751 6.86734 7.11095 7.37613 8.82743 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010805 B = 0.007138 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.798939 B = 3921.949870 C = 6018.701122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.366 6.366 4 C 0.463 3.537 5 O -0.539 6.539 6 C -0.097 4.097 7 C 0.226 3.774 8 H 0.021 0.979 9 C -0.573 4.573 10 H 0.063 0.937 11 C 0.045 3.955 12 N -0.883 5.883 13 Si 0.955 3.045 14 H -0.264 1.264 15 H -0.285 1.285 16 H -0.273 1.273 17 O -0.315 6.315 18 C 0.138 3.862 19 C -0.219 4.219 20 C -0.088 4.088 21 C -0.154 4.154 22 C -0.095 4.095 23 C -0.082 4.082 24 C -0.194 4.194 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.268 0.732 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.150 0.850 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.185 -7.899 -2.222 8.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.284 6.284 4 C 0.309 3.691 5 O -0.429 6.429 6 C -0.135 4.135 7 C 0.172 3.828 8 H 0.039 0.961 9 C -0.609 4.609 10 H 0.081 0.919 11 C -0.159 4.159 12 N -0.518 5.518 13 Si 0.780 3.220 14 H -0.189 1.189 15 H -0.211 1.211 16 H -0.198 1.198 17 O -0.228 6.228 18 C 0.090 3.910 19 C -0.238 4.238 20 C -0.106 4.106 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.100 4.100 24 C -0.213 4.213 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.167 0.833 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.259 -8.122 -1.912 8.348 hybrid contribution 0.096 1.007 -0.091 1.016 sum -0.163 -7.115 -2.003 7.393 Atomic orbital electron populations 1.21808 0.89827 1.04464 1.03714 1.23284 0.97514 0.79705 1.02039 1.86546 1.24230 1.33548 1.84049 1.24562 0.80361 0.93506 0.70711 1.90583 1.61067 1.44194 1.47050 1.21670 0.95806 0.88992 1.07007 1.19706 0.89607 0.91777 0.81722 0.96082 1.21578 1.33040 0.95864 1.10465 0.91899 1.25685 0.94073 1.02159 0.94030 1.69985 1.35235 1.35286 1.11335 0.85614 0.79127 0.79784 0.77493 1.18857 1.21059 1.19800 1.86143 1.30431 1.67089 1.39155 1.19463 0.86347 0.90636 0.94511 1.21379 0.97339 1.06196 0.98899 1.21079 0.94493 0.96064 0.98984 1.20078 0.99051 1.02412 0.93915 1.20654 0.91449 0.99861 1.03206 1.21015 0.92130 0.98149 0.98660 1.20582 0.99113 1.03958 0.97651 0.87766 0.91533 0.90982 0.91455 0.92314 0.86055 0.86396 0.92301 0.86643 0.84342 0.90922 0.90590 0.90980 0.83282 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 10.29 71.98 0.74 -2.07 16 2 C 0.05 1.40 6.19 71.98 0.45 1.85 16 3 O -0.37 -13.75 10.22 -51.40 -0.53 -14.27 16 4 C 0.46 20.52 7.84 71.24 0.56 21.08 16 5 O -0.54 -26.36 15.17 27.03 0.41 -25.95 16 6 C -0.10 -4.54 5.22 29.85 0.16 -4.39 16 7 C 0.23 11.65 1.35 29.85 0.04 11.69 16 8 H 0.02 1.10 6.18 -2.39 -0.01 1.08 16 9 C -0.57 -30.37 7.92 25.60 0.20 -30.17 16 10 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 11 C 0.05 2.38 5.24 84.66 0.44 2.82 16 12 N -0.88 -48.24 10.93 21.45 0.23 -48.00 16 13 Si 0.95 41.74 29.54 68.60 2.03 43.77 16 14 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 O -0.32 -17.22 8.43 -78.64 -0.66 -17.88 16 18 C 0.14 6.84 6.59 22.51 0.15 6.99 16 19 C -0.22 -9.92 8.69 22.37 0.19 -9.73 16 20 C -0.09 -3.23 9.69 22.26 0.22 -3.02 16 21 C -0.15 -5.03 5.88 -19.85 -0.12 -5.14 16 22 C -0.10 -2.12 10.01 71.24 0.71 -1.41 16 23 C -0.08 -2.84 9.69 22.25 0.22 -2.63 16 24 C -0.19 -8.44 9.99 22.36 0.22 -8.22 16 25 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 29 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 30 H 0.12 6.18 6.22 -2.39 -0.01 6.17 16 31 H 0.12 4.95 8.14 -2.39 -0.02 4.93 16 32 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 33 H 0.12 5.43 5.67 -2.91 -0.02 5.41 16 34 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 37 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 38 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 39 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -65.58 331.71 6.70 -58.88 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 1.04 Total: 25.80 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 4.18 Total: -22.34 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.23 Total: -48.00 kcal Atomic # 8 Polarization: -57.33 SS G_CDS: -0.78 Total: -58.10 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -65.58 6.70 -58.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225258200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.048 kcal (2) G-P(sol) polarization free energy of solvation -65.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds