Wall clock time and date at job start Mon Mar 30 2020 23:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47077 * 2 1 4 4 C 1.42904 * 114.00209 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46929 * 330.00361 * 4 3 2 6 6 C 1.52999 * 109.47069 * 89.99849 * 4 3 2 7 7 C 1.52992 * 109.47248 * 210.00329 * 4 3 2 8 8 O 1.42901 * 109.46977 * 294.99716 * 7 4 3 9 9 C 1.35666 * 116.99897 * 179.97438 * 8 7 4 10 10 C 1.39167 * 119.90440 * 180.02562 * 9 8 7 11 11 C 1.37588 * 120.09248 * 180.26020 * 10 9 8 12 12 C 1.39956 * 119.90575 * 359.51881 * 11 10 9 13 13 C 1.47571 * 120.09162 * 180.21076 * 12 11 10 14 14 O 1.21819 * 119.99584 * 180.29499 * 13 12 11 15 15 C 1.41760 * 120.00426 * 0.29020 * 13 12 11 16 16 H 1.07998 * 119.99823 * 0.02562 * 15 13 12 17 17 C 1.40335 * 120.00080 * 180.02562 * 15 13 12 18 18 N 1.30529 * 120.00084 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99838 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47313 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47322 * 119.99994 * 19 17 15 22 22 H 1.48502 * 109.47039 * 239.99801 * 19 17 15 23 23 C 1.39951 * 119.80940 * 0.49945 * 12 11 10 24 24 C 1.37587 * 119.90470 * 359.73525 * 23 12 11 25 25 H 1.09001 * 109.47119 * 299.99477 * 1 2 3 26 26 H 1.08997 * 109.47267 * 59.99774 * 1 2 3 27 27 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47119 * 240.00523 * 2 1 3 29 29 H 1.08997 * 109.47267 * 120.00226 * 2 1 3 30 30 H 1.08998 * 109.47346 * 179.97438 * 6 4 3 31 31 H 1.09000 * 109.47109 * 300.00466 * 6 4 3 32 32 H 1.09000 * 109.46827 * 60.00450 * 6 4 3 33 33 H 1.09001 * 109.47545 * 174.99816 * 7 4 3 34 34 H 1.08999 * 109.47429 * 55.00108 * 7 4 3 35 35 H 1.08002 * 119.95068 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.04935 * 179.74294 * 11 10 9 37 37 H 0.97005 * 119.99827 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.04211 * 179.70524 * 23 12 11 39 39 H 1.08003 * 119.95089 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8636 0.6016 0.5129 6 6 3.9387 1.5006 -1.4433 7 6 3.8409 2.7456 0.7207 8 8 3.3718 3.8760 -0.0169 9 6 3.6531 5.1024 0.4905 10 6 3.2246 6.2450 -0.1785 11 6 3.5124 7.4908 0.3298 12 6 4.2283 7.6077 1.5267 13 6 4.5351 8.9417 2.0780 14 8 5.1630 9.0416 3.1171 15 6 4.0993 10.1070 1.3985 16 1 3.5423 10.0184 0.4775 17 6 4.3916 11.3756 1.9226 18 7 5.0643 11.4826 3.0360 19 14 3.8166 12.9110 1.0274 20 1 3.0793 12.5210 -0.2011 21 1 2.9207 13.6953 1.9150 22 1 4.9932 13.7376 0.6566 23 6 4.6576 6.4560 2.1960 24 6 4.3698 5.2142 1.6781 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.0252 1.5872 -1.4438 31 1 3.6465 0.5848 -1.9571 32 1 3.5060 2.3593 -1.9568 33 1 4.9273 2.7879 0.7985 34 1 3.4045 2.7569 1.7195 35 1 2.6695 6.1538 -1.1004 36 1 3.1831 8.3771 -0.1921 37 1 5.2666 12.3595 3.3980 38 1 5.2145 6.5420 3.1174 39 1 4.7011 4.3249 2.1937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233523330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:33 Heat of formation + Delta-G solvation = -110.852281 kcal Electronic energy + Delta-G solvation = -20718.082385 eV Core-core repulsion = 17397.938465 eV Total energy + Delta-G solvation = -3320.143919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.81092 -38.51560 -37.32116 -35.63833 -33.01163 -32.65716 -30.58975 -30.43009 -29.37246 -26.99084 -26.52498 -23.14193 -22.69242 -22.28436 -20.84180 -19.58490 -18.02569 -17.02554 -16.53628 -15.99864 -15.65414 -15.49852 -15.26846 -14.58621 -14.20546 -13.74041 -13.55143 -13.30755 -13.04274 -12.89228 -12.72705 -12.40547 -12.38655 -12.12842 -11.74454 -11.71887 -11.52333 -11.44870 -11.14283 -11.07386 -10.97290 -10.54361 -10.32256 -10.32041 -9.92284 -9.75063 -8.96830 -8.38113 -7.46083 -7.41395 -6.28930 -4.88751 1.90313 2.05207 3.05139 3.14329 3.18982 3.37366 3.42086 4.02091 4.06833 4.53289 4.67483 4.71315 4.83284 4.89498 4.99076 5.07535 5.16804 5.27384 5.39285 5.42989 5.51148 5.58291 5.63121 5.67473 5.84024 5.87464 5.95262 6.07518 6.10116 6.17730 6.36144 6.68632 6.89925 7.00836 7.08087 7.26682 7.39399 7.43062 7.89590 8.06200 8.80970 8.86524 10.32856 10.55158 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036002 B = 0.003020 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.546641 B = 9268.226548 C = 9523.412171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.373 6.373 4 C 0.091 3.909 5 H 0.076 0.924 6 C -0.173 4.173 7 C 0.063 3.937 8 O -0.306 6.306 9 C 0.113 3.887 10 C -0.164 4.164 11 C -0.056 4.056 12 C -0.138 4.138 13 C 0.389 3.611 14 O -0.545 6.545 15 C -0.517 4.517 16 H 0.075 0.925 17 C 0.079 3.921 18 N -0.736 5.736 19 Si 0.906 3.094 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.056 4.056 24 C -0.221 4.221 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.122 0.878 36 H 0.136 0.864 37 H 0.273 0.727 38 H 0.126 0.874 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.579 -19.514 -7.264 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.292 6.292 4 C 0.033 3.967 5 H 0.094 0.906 6 C -0.230 4.230 7 C -0.012 4.012 8 O -0.220 6.220 9 C 0.069 3.931 10 C -0.183 4.183 11 C -0.075 4.075 12 C -0.140 4.140 13 C 0.285 3.715 14 O -0.435 6.435 15 C -0.548 4.548 16 H 0.093 0.907 17 C -0.144 4.144 18 N -0.365 5.365 19 Si 0.730 3.270 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.074 4.074 24 C -0.240 4.240 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.084 0.916 38 H 0.144 0.856 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.421 -19.305 -6.798 20.939 hybrid contribution -0.018 0.336 -0.307 0.455 sum -4.440 -18.970 -7.105 20.737 Atomic orbital electron populations 1.21735 0.93709 1.02040 1.03405 1.22517 0.95806 0.84139 0.99754 1.88077 1.20233 1.25863 1.95034 1.22170 0.82153 0.95743 0.96639 0.90647 1.22205 1.01384 1.03010 0.96417 1.22826 0.98756 0.84166 0.95485 1.86002 1.74779 1.11891 1.49337 1.19142 0.96402 0.84348 0.93248 1.20336 1.05925 0.90200 1.01841 1.21392 0.95117 0.96078 0.94865 1.21800 0.98518 0.98255 0.95405 1.18079 0.81748 0.85420 0.86205 1.90495 1.40416 1.87920 1.24664 1.20971 1.33212 0.91515 1.09125 0.90700 1.26016 0.93324 1.00790 0.94268 1.69975 1.25754 1.25098 1.15663 0.86327 0.79238 0.81032 0.80410 1.18312 1.19852 1.19865 1.21173 0.96420 0.90888 0.98953 1.21068 1.06511 0.98512 0.97927 0.91750 0.91734 0.91269 0.93518 0.93547 0.91589 0.92645 0.90529 0.90889 0.91535 0.86022 0.84647 0.91584 0.85578 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.05 0.46 6.47 37.16 0.24 0.70 16 3 O -0.37 -4.46 9.95 -40.08 -0.40 -4.85 16 4 C 0.09 0.93 3.13 -26.74 -0.08 0.84 16 5 H 0.08 0.57 7.79 -51.93 -0.40 0.17 16 6 C -0.17 -1.66 9.33 37.16 0.35 -1.31 16 7 C 0.06 0.77 4.61 37.15 0.17 0.94 16 8 O -0.31 -4.86 9.21 -23.55 -0.22 -5.08 16 9 C 0.11 2.03 6.70 -38.89 -0.26 1.77 16 10 C -0.16 -3.04 9.97 -39.47 -0.39 -3.43 16 11 C -0.06 -1.17 9.43 -39.18 -0.37 -1.54 16 12 C -0.14 -3.33 5.89 -104.81 -0.62 -3.95 16 13 C 0.39 11.19 6.91 -34.43 -0.24 10.95 16 14 O -0.54 -17.55 14.89 5.08 0.08 -17.48 16 15 C -0.52 -14.32 8.86 -37.45 -0.33 -14.65 16 16 H 0.07 1.88 6.01 -52.49 -0.32 1.56 16 17 C 0.08 2.14 5.50 -17.32 -0.10 2.05 16 18 N -0.74 -21.36 11.73 55.57 0.65 -20.71 16 19 Si 0.91 19.36 29.56 -169.99 -5.03 14.33 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 23 C -0.06 -1.21 9.59 -39.18 -0.38 -1.59 16 24 C -0.22 -4.02 9.01 -39.48 -0.36 -4.38 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.34 7.87 -51.93 -0.41 -0.07 16 29 H 0.05 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.08 0.89 7.56 -51.93 -0.39 0.50 16 33 H 0.07 0.77 7.65 -51.93 -0.40 0.38 16 34 H 0.07 0.80 7.65 -51.93 -0.40 0.41 16 35 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.14 2.68 6.19 -52.49 -0.33 2.35 16 37 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 38 H 0.13 2.78 7.65 -52.48 -0.40 2.38 16 39 H 0.12 1.75 6.28 -52.48 -0.33 1.42 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -33.74 331.85 -7.34 -41.09 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.45 Total: 2.07 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.98 Total: -14.37 kcal Atomic # 7 Polarization: -21.36 SS G_CDS: 0.65 Total: -20.71 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.54 Total: -27.41 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.74 -7.34 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.767 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds