Wall clock time and date at job start Mon Mar 30 2020 23:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47077 * 2 1 4 4 C 1.42904 * 114.00209 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46929 * 330.00361 * 4 3 2 6 6 C 1.52999 * 109.47069 * 89.99849 * 4 3 2 7 7 C 1.52992 * 109.47248 * 210.00329 * 4 3 2 8 8 O 1.42901 * 109.46977 * 294.99716 * 7 4 3 9 9 C 1.35666 * 116.99897 * 179.97438 * 8 7 4 10 10 C 1.39167 * 119.90440 * 180.02562 * 9 8 7 11 11 C 1.37588 * 120.09248 * 180.26020 * 10 9 8 12 12 C 1.39956 * 119.90575 * 359.51881 * 11 10 9 13 13 C 1.47571 * 120.09162 * 180.21076 * 12 11 10 14 14 O 1.21819 * 119.99584 * 180.29499 * 13 12 11 15 15 C 1.41760 * 120.00426 * 0.29020 * 13 12 11 16 16 H 1.07998 * 119.99823 * 0.02562 * 15 13 12 17 17 C 1.40335 * 120.00080 * 180.02562 * 15 13 12 18 18 N 1.30529 * 120.00084 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99838 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47313 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47322 * 119.99994 * 19 17 15 22 22 H 1.48502 * 109.47039 * 239.99801 * 19 17 15 23 23 C 1.39951 * 119.80940 * 0.49945 * 12 11 10 24 24 C 1.37587 * 119.90470 * 359.73525 * 23 12 11 25 25 H 1.09001 * 109.47119 * 299.99477 * 1 2 3 26 26 H 1.08997 * 109.47267 * 59.99774 * 1 2 3 27 27 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47119 * 240.00523 * 2 1 3 29 29 H 1.08997 * 109.47267 * 120.00226 * 2 1 3 30 30 H 1.08998 * 109.47346 * 179.97438 * 6 4 3 31 31 H 1.09000 * 109.47109 * 300.00466 * 6 4 3 32 32 H 1.09000 * 109.46827 * 60.00450 * 6 4 3 33 33 H 1.09001 * 109.47545 * 174.99816 * 7 4 3 34 34 H 1.08999 * 109.47429 * 55.00108 * 7 4 3 35 35 H 1.08002 * 119.95068 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.04935 * 179.74294 * 11 10 9 37 37 H 0.97005 * 119.99827 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.04211 * 179.70524 * 23 12 11 39 39 H 1.08003 * 119.95089 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8636 0.6016 0.5129 6 6 3.9387 1.5006 -1.4433 7 6 3.8409 2.7456 0.7207 8 8 3.3718 3.8760 -0.0169 9 6 3.6531 5.1024 0.4905 10 6 3.2246 6.2450 -0.1785 11 6 3.5124 7.4908 0.3298 12 6 4.2283 7.6077 1.5267 13 6 4.5351 8.9417 2.0780 14 8 5.1630 9.0416 3.1171 15 6 4.0993 10.1070 1.3985 16 1 3.5423 10.0184 0.4775 17 6 4.3916 11.3756 1.9226 18 7 5.0643 11.4826 3.0360 19 14 3.8166 12.9110 1.0274 20 1 3.0793 12.5210 -0.2011 21 1 2.9207 13.6953 1.9150 22 1 4.9932 13.7376 0.6566 23 6 4.6576 6.4560 2.1960 24 6 4.3698 5.2142 1.6781 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.0252 1.5872 -1.4438 31 1 3.6465 0.5848 -1.9571 32 1 3.5060 2.3593 -1.9568 33 1 4.9273 2.7879 0.7985 34 1 3.4045 2.7569 1.7195 35 1 2.6695 6.1538 -1.1004 36 1 3.1831 8.3771 -0.1921 37 1 5.2666 12.3595 3.3980 38 1 5.2145 6.5420 3.1174 39 1 4.7011 4.3249 2.1937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:33 Heat of formation + Delta-G solvation = -132.160183 kcal Electronic energy + Delta-G solvation = -20719.006365 eV Core-core repulsion = 17397.938465 eV Total energy + Delta-G solvation = -3321.067899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.13643 -39.63227 -38.85243 -37.40210 -34.78873 -33.80241 -32.08664 -31.39854 -30.85294 -28.60329 -27.86808 -24.34340 -23.92037 -23.51415 -21.95697 -21.40624 -19.29974 -18.61159 -17.85035 -17.41745 -16.88294 -16.68588 -16.29362 -15.99552 -15.74148 -15.27175 -14.89458 -14.47936 -14.35684 -14.25071 -14.08619 -13.64865 -13.58286 -13.44660 -13.05343 -12.96503 -12.79969 -12.73254 -12.51586 -12.26501 -12.17138 -12.00189 -11.76696 -11.68010 -11.56524 -11.00300 -10.49574 -9.93959 -9.61586 -9.01873 -8.34311 -7.07055 0.24549 0.48241 1.37896 1.38971 1.57773 2.21155 2.21784 2.22917 2.69236 2.86635 3.71759 3.75216 3.91758 3.96567 3.99596 4.17506 4.20495 4.28758 4.29659 4.39814 4.49131 4.51860 4.54119 4.61511 4.70929 4.79176 4.91062 4.98570 5.05022 5.11853 5.20899 5.28100 5.31319 5.37528 5.45617 5.75872 5.81404 5.99451 6.31589 6.50760 6.70448 6.80672 8.25343 8.49511 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036002 B = 0.003020 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.546641 B = 9268.226548 C = 9523.412171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.404 6.404 4 C 0.090 3.910 5 H 0.108 0.892 6 C -0.171 4.171 7 C 0.049 3.951 8 O -0.308 6.308 9 C 0.130 3.870 10 C -0.162 4.162 11 C -0.053 4.053 12 C -0.182 4.182 13 C 0.365 3.635 14 O -0.601 6.601 15 C -0.543 4.543 16 H 0.096 0.904 17 C 0.021 3.979 18 N -0.789 5.789 19 Si 0.997 3.003 20 H -0.242 1.242 21 H -0.265 1.265 22 H -0.264 1.264 23 C -0.067 4.067 24 C -0.212 4.212 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.282 0.718 38 H 0.109 0.891 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.557 -21.252 -9.333 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.324 6.324 4 C 0.033 3.967 5 H 0.126 0.874 6 C -0.228 4.228 7 C -0.026 4.026 8 O -0.222 6.222 9 C 0.085 3.915 10 C -0.181 4.181 11 C -0.071 4.071 12 C -0.183 4.183 13 C 0.265 3.735 14 O -0.496 6.496 15 C -0.573 4.573 16 H 0.114 0.886 17 C -0.197 4.197 18 N -0.418 5.418 19 Si 0.815 3.185 20 H -0.165 1.165 21 H -0.190 1.190 22 H -0.189 1.189 23 C -0.086 4.086 24 C -0.230 4.230 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.412 -21.084 -8.888 23.512 hybrid contribution 0.261 0.636 0.317 0.757 sum -5.151 -20.448 -8.571 22.762 Atomic orbital electron populations 1.21772 0.93590 1.03231 1.02349 1.22722 0.96014 0.82964 1.01093 1.88038 1.21179 1.27993 1.95229 1.22299 0.81832 0.95562 0.97035 0.87443 1.22186 1.01953 1.02651 0.96004 1.23263 1.00112 0.83526 0.95672 1.86037 1.74537 1.11796 1.49826 1.19237 0.94488 0.85416 0.92394 1.20566 1.05503 0.89386 1.02622 1.21375 0.94517 0.97541 0.93690 1.21459 1.02315 0.96716 0.97820 1.18806 0.80895 0.88102 0.85690 1.90431 1.43007 1.89260 1.26914 1.21492 1.33624 0.92208 1.10017 0.88579 1.27319 0.92657 1.04906 0.94864 1.70120 1.27105 1.26753 1.17835 0.84985 0.78984 0.75288 0.79246 1.16487 1.18951 1.18899 1.21125 0.96879 0.91917 0.98642 1.21263 1.05658 0.98102 0.97999 0.92843 0.92720 0.88999 0.92199 0.92050 0.90420 0.91201 0.92994 0.88857 0.91297 0.83205 0.84127 0.90764 0.87283 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.05 0.68 6.47 71.98 0.47 1.15 16 3 O -0.40 -8.66 9.95 -144.34 -1.44 -10.10 16 4 C 0.09 1.54 3.13 30.59 0.10 1.64 16 5 H 0.11 1.17 7.79 -2.39 -0.02 1.15 16 6 C -0.17 -2.77 9.33 71.98 0.67 -2.10 16 7 C 0.05 1.04 4.61 71.98 0.33 1.37 16 8 O -0.31 -8.94 9.21 -85.19 -0.78 -9.73 16 9 C 0.13 4.41 6.70 22.71 0.15 4.56 16 10 C -0.16 -5.70 9.97 22.34 0.22 -5.48 16 11 C -0.05 -2.20 9.43 22.53 0.21 -1.99 16 12 C -0.18 -9.07 5.89 -19.98 -0.12 -9.18 16 13 C 0.36 22.11 6.91 25.61 0.18 22.29 16 14 O -0.60 -41.38 14.89 -4.73 -0.07 -41.45 16 15 C -0.54 -30.98 8.86 23.65 0.21 -30.77 16 16 H 0.10 4.85 6.01 -2.91 -0.02 4.84 16 17 C 0.02 1.17 5.50 85.40 0.47 1.64 16 18 N -0.79 -47.65 11.73 21.89 0.26 -47.39 16 19 Si 1.00 39.78 29.56 68.60 2.03 41.81 16 20 H -0.24 -8.89 7.11 99.48 0.71 -8.19 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 C -0.07 -3.00 9.59 22.53 0.22 -2.78 16 24 C -0.21 -7.41 9.01 22.34 0.20 -7.21 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.69 7.87 -2.39 -0.02 0.67 16 29 H 0.06 0.68 8.09 -2.39 -0.02 0.66 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 0.92 7.87 -2.39 -0.02 0.90 16 32 H 0.05 1.10 7.56 -2.39 -0.02 1.08 16 33 H 0.09 1.62 7.65 -2.39 -0.02 1.60 16 34 H 0.07 1.45 7.65 -2.39 -0.02 1.43 16 35 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 36 H 0.14 5.53 6.19 -2.91 -0.02 5.51 16 37 H 0.28 15.12 8.29 -92.70 -0.77 14.35 16 38 H 0.11 5.13 7.65 -2.91 -0.02 5.11 16 39 H 0.15 4.14 6.28 -2.91 -0.02 4.12 16 Total: -1.00 -77.92 331.85 5.09 -72.84 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 1.05 Total: 22.21 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 4.05 Total: -28.19 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.26 Total: -47.39 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -2.29 Total: -61.28 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -77.92 5.09 -72.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.324 kcal (2) G-P(sol) polarization free energy of solvation -77.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds