Wall clock time and date at job start Mon Mar 30 2020 23:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.47401 * 2 1 4 4 C 1.42900 * 114.00029 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46852 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.46749 * 184.99970 * 5 4 3 7 7 C 1.53003 * 109.46926 * 304.99860 * 5 4 3 8 8 O 1.42898 * 109.47303 * 64.99527 * 5 4 3 9 9 C 1.35633 * 117.00153 * 154.98959 * 8 5 4 10 10 C 1.38674 * 120.15803 * 5.49272 * 9 8 5 11 11 C 1.38092 * 120.09297 * 180.02562 * 10 9 8 12 12 C 1.38690 * 120.41313 * 359.97438 * 11 10 9 13 13 C 1.37700 * 120.32412 * 359.97438 * 12 11 10 14 14 C 1.39846 * 119.90090 * 0.28255 * 13 12 11 15 15 C 1.47531 * 120.20500 * 179.69885 * 14 13 12 16 16 O 1.21820 * 119.99757 * 179.97438 * 15 14 13 17 17 C 1.41831 * 120.00044 * 359.97438 * 15 14 13 18 18 H 1.08000 * 119.99623 * 0.02562 * 17 15 14 19 19 C 1.40327 * 119.99925 * 180.02562 * 17 15 14 20 20 N 1.30543 * 119.99821 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99875 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47464 * 59.99920 * 21 19 17 23 23 H 1.48505 * 109.47122 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46887 * 299.99661 * 21 19 17 25 25 H 1.08992 * 109.46997 * 59.99782 * 1 2 3 26 26 H 1.09002 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46840 * 300.00242 * 1 2 3 28 28 H 1.08996 * 109.47590 * 239.99691 * 2 1 3 29 29 H 1.09003 * 109.47362 * 119.99578 * 2 1 3 30 30 H 1.08995 * 109.47119 * 60.00002 * 4 3 2 31 31 H 1.09000 * 109.46858 * 299.99503 * 4 3 2 32 32 H 1.09002 * 109.47333 * 59.99714 * 7 5 4 33 33 H 1.08998 * 109.47409 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.46802 * 300.00016 * 7 5 4 35 35 H 1.08001 * 119.95440 * 359.97438 * 10 9 8 36 36 H 1.07997 * 119.79041 * 180.02562 * 11 10 9 37 37 H 1.07994 * 119.83377 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.05020 * 179.97438 * 13 12 11 39 39 H 0.96999 * 119.99569 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8255 2.9384 -0.0012 6 1 4.9082 3.0254 -0.0912 7 6 3.1571 3.6441 -1.1828 8 8 3.3986 3.5458 1.2198 9 6 4.0772 4.6460 1.6304 10 6 5.0577 5.2017 0.8224 11 6 5.7482 6.3215 1.2420 12 6 5.4682 6.8993 2.4714 13 6 4.4974 6.3622 3.2870 14 6 3.7936 5.2252 2.8776 15 6 2.7567 4.6403 3.7490 16 8 2.1457 3.6501 3.3884 17 6 2.4714 5.2310 5.0065 18 1 3.0129 6.1091 5.3259 19 6 1.4855 4.6743 5.8356 20 7 0.8314 3.6126 5.4496 21 14 1.1092 5.4527 7.4914 22 1 0.6590 6.8532 7.2893 23 1 0.0369 4.6805 8.1691 24 1 2.3329 5.4426 8.3326 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8333 0.9767 -0.8908 31 1 3.8340 0.9765 0.8892 32 1 2.0743 3.5570 -1.0929 33 1 3.4385 4.6971 -1.1836 34 1 3.4827 3.1807 -2.1141 35 1 5.2821 4.7576 -0.1362 36 1 6.5105 6.7505 0.6086 37 1 6.0137 7.7751 2.7901 38 1 4.2832 6.8155 4.2436 39 1 0.1497 3.2281 6.0225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524917.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:17 Heat of formation + Delta-G solvation = -101.094436 kcal Electronic energy + Delta-G solvation = -21896.975129 eV Core-core repulsion = 18577.254342 eV Total energy + Delta-G solvation = -3319.720787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.68663 -37.93034 -36.72006 -35.88211 -32.66440 -32.32627 -30.64018 -30.21644 -28.95791 -26.58407 -26.19711 -22.90752 -22.54645 -22.36700 -20.25194 -19.64683 -17.63632 -16.51281 -16.24206 -15.87933 -15.36920 -15.27985 -14.55589 -14.45340 -14.23769 -13.69001 -13.30811 -13.23145 -12.79433 -12.59034 -12.41233 -12.12749 -12.08279 -11.67661 -11.41631 -11.31776 -11.20332 -11.12423 -10.98059 -10.78689 -10.76734 -10.37541 -10.25753 -10.13972 -10.00131 -9.31435 -8.86141 -8.13253 -7.34845 -7.24812 -6.14060 -4.74753 1.87540 2.14224 3.13600 3.18402 3.20436 3.81164 3.91118 4.09607 4.16234 4.74316 4.97631 5.18477 5.24530 5.25466 5.38085 5.41735 5.48617 5.51086 5.55635 5.68891 5.80849 5.83680 5.90211 5.96815 5.98750 6.07226 6.13202 6.26019 6.37600 6.42457 6.51997 6.77102 7.00244 7.01360 7.23277 7.37462 7.47475 7.57008 8.15083 8.25180 8.92883 8.99192 10.47291 10.71687 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.006761 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.387492 B = 4140.699225 C = 6191.834580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.073 3.927 5 C 0.077 3.923 6 H 0.077 0.923 7 C -0.172 4.172 8 O -0.253 6.253 9 C 0.151 3.849 10 C -0.233 4.233 11 C -0.093 4.093 12 C -0.178 4.178 13 C -0.059 4.059 14 C -0.137 4.137 15 C 0.390 3.610 16 O -0.511 6.511 17 C -0.523 4.523 18 H 0.070 0.930 19 C 0.081 3.919 20 N -0.738 5.738 21 Si 0.903 3.097 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.266 1.266 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.796 -2.038 -10.000 11.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.286 6.286 4 C -0.004 4.004 5 C 0.020 3.980 6 H 0.095 0.905 7 C -0.229 4.229 8 O -0.164 6.164 9 C 0.104 3.896 10 C -0.251 4.251 11 C -0.112 4.112 12 C -0.196 4.196 13 C -0.077 4.077 14 C -0.139 4.139 15 C 0.283 3.717 16 O -0.398 6.398 17 C -0.555 4.555 18 H 0.089 0.911 19 C -0.141 4.141 20 N -0.367 5.367 21 Si 0.727 3.273 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.190 1.190 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.151 0.849 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.075 -2.631 -10.105 11.610 hybrid contribution 0.393 0.397 0.607 0.826 sum 5.468 -2.234 -9.498 11.185 Atomic orbital electron populations 1.21714 0.93869 1.01673 1.03524 1.22399 0.95778 0.84270 0.99336 1.88047 1.19822 1.25525 1.95184 1.22459 0.82929 0.94745 1.00275 1.22446 0.98057 0.92062 0.85476 0.90544 1.22243 1.03530 1.00515 0.96652 1.86621 1.53586 1.38792 1.37396 1.19467 0.90353 0.87027 0.92776 1.21114 1.01794 1.01060 1.01161 1.20796 0.98749 0.95419 0.96191 1.20931 1.01126 1.01802 0.95755 1.21401 0.93282 0.93847 0.99179 1.21581 1.01698 0.96888 0.93721 1.17996 0.81852 0.85754 0.86126 1.90582 1.49229 1.25465 1.74500 1.20859 1.18944 1.12843 1.02858 0.91146 1.25943 0.94886 0.94045 0.99256 1.69973 1.15794 1.15903 1.35038 0.86500 0.78737 0.80052 0.82004 1.19018 1.20405 1.19048 0.92234 0.91597 0.91099 0.94257 0.93434 0.92344 0.92389 0.90407 0.92157 0.92003 0.86284 0.87023 0.86866 0.84852 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 37.16 0.38 -1.64 16 2 C 0.06 0.85 6.66 37.16 0.25 1.10 16 3 O -0.37 -6.68 9.43 -40.09 -0.38 -7.06 16 4 C 0.07 1.15 5.81 37.16 0.22 1.37 16 5 C 0.08 1.30 2.63 -26.73 -0.07 1.23 16 6 H 0.08 1.11 6.31 -51.93 -0.33 0.78 16 7 C -0.17 -2.58 8.97 37.16 0.33 -2.25 16 8 O -0.25 -5.86 7.85 -44.39 -0.35 -6.21 16 9 C 0.15 3.39 6.62 -38.61 -0.26 3.14 16 10 C -0.23 -4.18 8.24 -39.47 -0.33 -4.51 16 11 C -0.09 -1.53 10.04 -39.47 -0.40 -1.93 16 12 C -0.18 -3.08 10.02 -39.61 -0.40 -3.48 16 13 C -0.06 -1.23 9.43 -39.18 -0.37 -1.60 16 14 C -0.14 -3.40 5.90 -104.69 -0.62 -4.02 16 15 C 0.39 11.53 6.91 -34.42 -0.24 11.29 16 16 O -0.51 -16.89 13.72 -16.75 -0.23 -17.12 16 17 C -0.52 -14.84 8.86 -37.42 -0.33 -15.17 16 18 H 0.07 1.80 6.02 -52.49 -0.32 1.48 16 19 C 0.08 2.25 5.50 -17.31 -0.10 2.15 16 20 N -0.74 -21.88 11.73 55.57 0.65 -21.23 16 21 Si 0.90 19.82 29.56 -169.99 -5.03 14.79 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.33 7.56 -51.93 -0.39 0.94 16 33 H 0.06 0.89 6.92 -51.93 -0.36 0.53 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.12 1.79 5.43 -52.49 -0.28 1.50 16 36 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.13 2.66 6.20 -52.49 -0.33 2.34 16 39 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -35.20 327.46 -7.68 -42.88 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.37 Total: 3.33 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.92 Total: -14.32 kcal Atomic # 7 Polarization: -21.88 SS G_CDS: 0.65 Total: -21.23 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.96 Total: -30.39 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.20 -7.68 -42.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524917.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.214 kcal (2) G-P(sol) polarization free energy of solvation -35.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds