Wall clock time and date at job start Mon Mar 30 2020 23:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.47401 * 2 1 4 4 C 1.42900 * 114.00029 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46852 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.46749 * 184.99970 * 5 4 3 7 7 C 1.53003 * 109.46926 * 304.99860 * 5 4 3 8 8 O 1.42898 * 109.47303 * 64.99527 * 5 4 3 9 9 C 1.35633 * 117.00153 * 154.98959 * 8 5 4 10 10 C 1.38674 * 120.15803 * 5.49272 * 9 8 5 11 11 C 1.38092 * 120.09297 * 180.02562 * 10 9 8 12 12 C 1.38690 * 120.41313 * 359.97438 * 11 10 9 13 13 C 1.37700 * 120.32412 * 359.97438 * 12 11 10 14 14 C 1.39846 * 119.90090 * 0.28255 * 13 12 11 15 15 C 1.47531 * 120.20500 * 179.69885 * 14 13 12 16 16 O 1.21820 * 119.99757 * 179.97438 * 15 14 13 17 17 C 1.41831 * 120.00044 * 359.97438 * 15 14 13 18 18 H 1.08000 * 119.99623 * 0.02562 * 17 15 14 19 19 C 1.40327 * 119.99925 * 180.02562 * 17 15 14 20 20 N 1.30543 * 119.99821 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99875 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47464 * 59.99920 * 21 19 17 23 23 H 1.48505 * 109.47122 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46887 * 299.99661 * 21 19 17 25 25 H 1.08992 * 109.46997 * 59.99782 * 1 2 3 26 26 H 1.09002 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46840 * 300.00242 * 1 2 3 28 28 H 1.08996 * 109.47590 * 239.99691 * 2 1 3 29 29 H 1.09003 * 109.47362 * 119.99578 * 2 1 3 30 30 H 1.08995 * 109.47119 * 60.00002 * 4 3 2 31 31 H 1.09000 * 109.46858 * 299.99503 * 4 3 2 32 32 H 1.09002 * 109.47333 * 59.99714 * 7 5 4 33 33 H 1.08998 * 109.47409 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.46802 * 300.00016 * 7 5 4 35 35 H 1.08001 * 119.95440 * 359.97438 * 10 9 8 36 36 H 1.07997 * 119.79041 * 180.02562 * 11 10 9 37 37 H 1.07994 * 119.83377 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.05020 * 179.97438 * 13 12 11 39 39 H 0.96999 * 119.99569 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8255 2.9384 -0.0012 6 1 4.9082 3.0254 -0.0912 7 6 3.1571 3.6441 -1.1828 8 8 3.3986 3.5458 1.2198 9 6 4.0772 4.6460 1.6304 10 6 5.0577 5.2017 0.8224 11 6 5.7482 6.3215 1.2420 12 6 5.4682 6.8993 2.4714 13 6 4.4974 6.3622 3.2870 14 6 3.7936 5.2252 2.8776 15 6 2.7567 4.6403 3.7490 16 8 2.1457 3.6501 3.3884 17 6 2.4714 5.2310 5.0065 18 1 3.0129 6.1091 5.3259 19 6 1.4855 4.6743 5.8356 20 7 0.8314 3.6126 5.4496 21 14 1.1092 5.4527 7.4914 22 1 0.6590 6.8532 7.2893 23 1 0.0369 4.6805 8.1691 24 1 2.3329 5.4426 8.3326 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8333 0.9767 -0.8908 31 1 3.8340 0.9765 0.8892 32 1 2.0743 3.5570 -1.0929 33 1 3.4385 4.6971 -1.1836 34 1 3.4827 3.1807 -2.1141 35 1 5.2821 4.7576 -0.1362 36 1 6.5105 6.7505 0.6086 37 1 6.0137 7.7751 2.7901 38 1 4.2832 6.8155 4.2436 39 1 0.1497 3.2281 6.0225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524917.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:16 Heat of formation + Delta-G solvation = -123.995770 kcal Electronic energy + Delta-G solvation = -21897.968205 eV Core-core repulsion = 18577.254342 eV Total energy + Delta-G solvation = -3320.713864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19807 -39.33427 -38.36218 -37.73001 -34.70837 -33.72528 -32.17773 -31.52502 -30.47942 -28.65190 -27.42389 -24.53749 -23.90574 -23.70395 -21.62765 -21.49347 -19.12180 -18.43363 -17.62777 -17.35278 -17.00067 -16.70623 -16.06310 -15.98243 -15.66272 -15.23611 -14.95008 -14.65868 -14.40829 -14.13408 -13.82390 -13.71757 -13.26167 -13.22344 -13.05925 -12.94132 -12.68805 -12.62114 -12.31684 -12.27476 -12.17193 -12.09395 -11.87482 -11.60317 -11.55491 -10.93897 -10.54584 -9.69578 -9.42164 -8.92277 -8.24063 -6.98407 0.30036 0.64771 1.36223 1.40689 1.51944 2.22648 2.32339 2.44360 2.74717 2.95054 3.74678 3.83600 3.95077 3.99420 4.07836 4.12704 4.13670 4.28415 4.35202 4.37720 4.45083 4.54203 4.59318 4.63840 4.73884 4.80416 4.85489 4.97635 5.00472 5.20241 5.22443 5.25164 5.30133 5.46213 5.58085 5.74501 5.98780 6.10761 6.30588 6.73292 6.76871 6.96006 8.37895 8.59923 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.006761 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.387492 B = 4140.699225 C = 6191.834580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.406 6.406 4 C 0.069 3.931 5 C 0.063 3.937 6 H 0.105 0.895 7 C -0.161 4.161 8 O -0.301 6.301 9 C 0.131 3.869 10 C -0.226 4.226 11 C -0.071 4.071 12 C -0.171 4.171 13 C -0.064 4.064 14 C -0.199 4.199 15 C 0.365 3.635 16 O -0.569 6.569 17 C -0.554 4.554 18 H 0.091 0.909 19 C 0.022 3.978 20 N -0.793 5.793 21 Si 0.994 3.006 22 H -0.252 1.252 23 H -0.271 1.271 24 H -0.251 1.251 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.032 0.968 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.156 0.844 38 H 0.131 0.869 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.371 -0.358 -11.332 14.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.326 6.326 4 C -0.008 4.008 5 C 0.007 3.993 6 H 0.123 0.877 7 C -0.219 4.219 8 O -0.214 6.214 9 C 0.084 3.916 10 C -0.244 4.244 11 C -0.089 4.089 12 C -0.188 4.188 13 C -0.082 4.082 14 C -0.200 4.200 15 C 0.262 3.738 16 O -0.461 6.461 17 C -0.585 4.585 18 H 0.109 0.891 19 C -0.196 4.196 20 N -0.423 5.423 21 Si 0.812 3.188 22 H -0.175 1.175 23 H -0.195 1.195 24 H -0.174 1.174 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.052 0.948 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.126 0.874 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.171 0.829 36 H 0.183 0.817 37 H 0.173 0.827 38 H 0.149 0.851 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.676 -0.933 -11.449 13.816 hybrid contribution -0.312 -0.131 0.887 0.949 sum 7.365 -1.064 -10.563 12.920 Atomic orbital electron populations 1.21744 0.93618 1.03268 1.01924 1.22627 0.96141 0.83113 1.00595 1.88011 1.21359 1.27755 1.95452 1.22667 0.82049 0.94521 1.01516 1.22923 0.99837 0.92466 0.84064 0.87700 1.22163 1.01327 1.00800 0.97570 1.86570 1.55101 1.39530 1.40192 1.19726 0.91584 0.87378 0.92871 1.21470 1.00034 1.01279 1.01652 1.21443 0.97985 0.93597 0.95852 1.21357 0.99586 1.02493 0.95407 1.21467 0.94003 0.92854 0.99891 1.21274 1.03365 1.00008 0.95393 1.18775 0.82458 0.85169 0.87406 1.90516 1.51743 1.27814 1.75982 1.21392 1.19922 1.13794 1.03371 0.89121 1.27259 0.93930 0.94173 1.04218 1.70156 1.16741 1.18043 1.37355 0.85132 0.79093 0.79177 0.75349 1.17533 1.19531 1.17429 0.91599 0.88389 0.94838 0.90421 0.94498 0.87443 0.94461 0.93614 0.92028 0.87946 0.82915 0.81731 0.82662 0.85114 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 10.28 71.98 0.74 -3.41 16 2 C 0.05 1.51 6.66 71.98 0.48 1.99 16 3 O -0.41 -15.43 9.43 -144.34 -1.36 -16.79 16 4 C 0.07 2.18 5.81 71.98 0.42 2.60 16 5 C 0.06 2.12 2.63 30.60 0.08 2.20 16 6 H 0.11 2.81 6.31 -2.39 -0.02 2.80 16 7 C -0.16 -4.66 8.97 71.98 0.65 -4.02 16 8 O -0.30 -14.75 7.85 -64.79 -0.51 -15.25 16 9 C 0.13 6.04 6.62 22.90 0.15 6.20 16 10 C -0.23 -7.53 8.24 22.34 0.18 -7.34 16 11 C -0.07 -1.99 10.04 22.34 0.22 -1.76 16 12 C -0.17 -5.30 10.02 22.25 0.22 -5.08 16 13 C -0.06 -2.66 9.43 22.53 0.21 -2.45 16 14 C -0.20 -10.34 5.90 -19.91 -0.12 -10.45 16 15 C 0.36 23.22 6.91 25.61 0.18 23.40 16 16 O -0.57 -41.05 13.72 16.14 0.22 -40.82 16 17 C -0.55 -33.10 8.86 23.67 0.21 -32.89 16 18 H 0.09 4.81 6.02 -2.91 -0.02 4.79 16 19 C 0.02 1.26 5.50 85.39 0.47 1.73 16 20 N -0.79 -50.13 11.73 21.88 0.26 -49.87 16 21 Si 0.99 41.70 29.56 68.60 2.03 43.73 16 22 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.60 7.56 -2.39 -0.02 1.59 16 33 H 0.06 1.72 6.92 -2.39 -0.02 1.71 16 34 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.15 3.94 5.43 -2.91 -0.02 3.93 16 36 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 38 H 0.13 5.28 6.20 -2.91 -0.02 5.26 16 39 H 0.28 15.78 8.29 -92.71 -0.77 15.01 16 Total: -1.00 -87.78 327.46 5.78 -82.00 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 1.05 Total: 26.31 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 4.10 Total: -29.28 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.26 Total: -49.87 kcal Atomic # 8 Polarization: -71.22 SS G_CDS: -1.65 Total: -72.87 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -87.78 5.78 -82.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524917.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.001 kcal (2) G-P(sol) polarization free energy of solvation -87.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds