Wall clock time and date at job start Mon Mar 30 2020 23:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47218 * 2 1 4 4 C 1.42896 * 114.00145 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.47033 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46790 * 174.99581 * 5 4 3 7 7 C 1.53001 * 109.47088 * 54.99663 * 5 4 3 8 8 O 1.42898 * 109.46837 * 294.99622 * 5 4 3 9 9 C 1.35632 * 116.99896 * 204.87893 * 8 5 4 10 10 C 1.38671 * 120.16083 * 354.57705 * 9 8 5 11 11 C 1.38086 * 120.09343 * 180.02562 * 10 9 8 12 12 C 1.38693 * 120.41740 * 359.97034 * 11 10 9 13 13 C 1.37703 * 120.31998 * 0.02562 * 12 11 10 14 14 C 1.39847 * 119.90116 * 0.27156 * 13 12 11 15 15 C 1.47527 * 120.20686 * 179.70375 * 14 13 12 16 16 O 1.21816 * 120.00194 * 179.97438 * 15 14 13 17 17 C 1.41836 * 119.99849 * 359.97438 * 15 14 13 18 18 H 1.07998 * 120.00140 * 0.02562 * 17 15 14 19 19 C 1.40325 * 119.99986 * 179.97438 * 17 15 14 20 20 N 1.30546 * 119.99969 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00003 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47219 * 90.00353 * 21 19 17 23 23 H 1.48507 * 109.46636 * 210.00152 * 21 19 17 24 24 H 1.48500 * 109.47024 * 329.99749 * 21 19 17 25 25 H 1.09005 * 109.46917 * 60.00427 * 1 2 3 26 26 H 1.09001 * 109.47049 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47221 * 300.00210 * 1 2 3 28 28 H 1.09000 * 109.47221 * 239.99790 * 2 1 3 29 29 H 1.08995 * 109.46981 * 119.99630 * 2 1 3 30 30 H 1.08997 * 109.47220 * 59.99718 * 4 3 2 31 31 H 1.09006 * 109.46743 * 299.99402 * 4 3 2 32 32 H 1.08996 * 109.47515 * 300.00095 * 7 5 4 33 33 H 1.09002 * 109.46848 * 60.00143 * 7 5 4 34 34 H 1.09006 * 109.46608 * 179.97438 * 7 5 4 35 35 H 1.07996 * 119.95471 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.79548 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.84126 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.05076 * 179.97438 * 13 12 11 39 39 H 0.96996 * 120.00156 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9385 0.0001 6 1 4.9082 3.0254 0.0893 7 6 3.1579 3.6438 1.1824 8 8 3.3975 3.5461 -1.2204 9 6 4.0741 4.6480 -1.6299 10 6 5.0542 5.2041 -0.8217 11 6 5.7419 6.3262 -1.2398 12 6 5.4601 6.9054 -2.4681 13 6 4.4903 6.3673 -3.2843 14 6 3.7814 5.2347 -2.8715 15 6 2.7365 4.6565 -3.7377 16 8 2.1216 3.6696 -3.3746 17 6 2.4479 5.2498 -4.9933 18 1 2.9933 6.1245 -5.3154 19 6 1.4544 4.6995 -5.8175 20 7 0.7955 3.6419 -5.4283 21 14 1.0748 5.4804 -7.4714 22 1 1.9323 4.8668 -8.5170 23 1 -0.3540 5.2558 -7.8084 24 1 1.3440 6.9392 -7.4035 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9767 -0.8907 31 1 3.8340 0.9765 0.8893 32 1 2.0751 3.5568 1.0933 33 1 3.4843 3.1803 2.1134 34 1 3.4394 4.6969 1.1831 35 1 5.2801 4.7590 0.1360 36 1 6.5040 6.7556 -0.6063 37 1 6.0039 7.7827 -2.7860 38 1 4.2742 6.8221 -4.2397 39 1 0.1085 3.2617 -5.9978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:19 Heat of formation + Delta-G solvation = -101.092894 kcal Electronic energy + Delta-G solvation = -21897.716740 eV Core-core repulsion = 18577.996020 eV Total energy + Delta-G solvation = -3319.720721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.68745 -37.93152 -36.72106 -35.88318 -32.66446 -32.32646 -30.64062 -30.21594 -28.95845 -26.58452 -26.19699 -22.90766 -22.54675 -22.36740 -20.25132 -19.64721 -17.63668 -16.51525 -16.24340 -15.88089 -15.36996 -15.28091 -14.55622 -14.44969 -14.23948 -13.68889 -13.30868 -13.22811 -12.79594 -12.58950 -12.41574 -12.12672 -12.08400 -11.67653 -11.42176 -11.31269 -11.20625 -11.12402 -10.97976 -10.80518 -10.76092 -10.35564 -10.25808 -10.14066 -9.99373 -9.31526 -8.86890 -8.13250 -7.34731 -7.24814 -6.14196 -4.74725 1.87537 2.14266 3.11603 3.18818 3.22199 3.81104 3.91043 4.09578 4.16193 4.74249 4.97558 5.18437 5.24514 5.25440 5.38051 5.41693 5.48611 5.51010 5.55556 5.68923 5.80793 5.83579 5.90233 5.96805 5.98789 6.07240 6.13182 6.26027 6.37706 6.42542 6.52153 6.77110 7.00213 7.01401 7.23317 7.37510 7.47475 7.57044 8.15519 8.25132 8.92998 8.99159 10.47157 10.71628 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.006762 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.449463 B = 4139.818249 C = 6190.953703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.073 3.927 5 C 0.077 3.923 6 H 0.077 0.923 7 C -0.172 4.172 8 O -0.253 6.253 9 C 0.151 3.849 10 C -0.233 4.233 11 C -0.093 4.093 12 C -0.178 4.178 13 C -0.059 4.059 14 C -0.137 4.137 15 C 0.389 3.611 16 O -0.511 6.511 17 C -0.523 4.523 18 H 0.071 0.929 19 C 0.081 3.919 20 N -0.738 5.738 21 Si 0.903 3.097 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.262 1.262 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.876 -2.088 9.961 11.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.286 6.286 4 C -0.004 4.004 5 C 0.020 3.980 6 H 0.095 0.905 7 C -0.229 4.229 8 O -0.164 6.164 9 C 0.104 3.896 10 C -0.251 4.251 11 C -0.112 4.112 12 C -0.196 4.196 13 C -0.077 4.077 14 C -0.139 4.139 15 C 0.283 3.717 16 O -0.398 6.398 17 C -0.555 4.555 18 H 0.089 0.911 19 C -0.141 4.141 20 N -0.367 5.367 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.186 1.186 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.152 0.848 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.151 -2.673 10.070 11.623 hybrid contribution 0.391 0.383 -0.610 0.820 sum 5.542 -2.290 9.460 11.201 Atomic orbital electron populations 1.21716 0.93866 1.01671 1.03532 1.22398 0.95783 0.84269 0.99330 1.88046 1.19818 1.25522 1.95180 1.22460 0.82933 0.94740 1.00272 1.22446 0.98048 0.92060 0.85488 0.90548 1.22243 1.03538 1.00520 0.96644 1.86621 1.53704 1.38648 1.37420 1.19469 0.90347 0.86989 0.92820 1.21110 1.01872 1.01000 1.01148 1.20795 0.98753 0.95394 0.96212 1.20934 1.01197 1.01748 0.95740 1.21402 0.93244 0.93909 0.99150 1.21580 1.01578 0.96898 0.93835 1.18004 0.81893 0.85719 0.86131 1.90582 1.49307 1.25597 1.74268 1.20891 1.18453 1.13103 1.03030 0.91101 1.25947 0.94914 0.94051 0.99231 1.69983 1.15622 1.16173 1.34926 0.86442 0.78128 0.80537 0.82205 1.19553 1.20294 1.18615 0.91095 0.91599 0.92231 0.93440 0.94258 0.92397 0.92343 0.90402 0.92003 0.92154 0.86283 0.87025 0.86865 0.84848 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 37.16 0.38 -1.65 16 2 C 0.06 0.85 6.66 37.16 0.25 1.10 16 3 O -0.37 -6.68 9.43 -40.08 -0.38 -7.06 16 4 C 0.07 1.15 5.81 37.16 0.22 1.37 16 5 C 0.08 1.30 2.63 -26.73 -0.07 1.23 16 6 H 0.08 1.11 6.32 -51.93 -0.33 0.78 16 7 C -0.17 -2.59 8.97 37.16 0.33 -2.25 16 8 O -0.25 -5.86 7.85 -44.39 -0.35 -6.21 16 9 C 0.15 3.39 6.62 -38.61 -0.26 3.14 16 10 C -0.23 -4.18 8.23 -39.48 -0.32 -4.51 16 11 C -0.09 -1.53 10.04 -39.47 -0.40 -1.93 16 12 C -0.18 -3.09 10.02 -39.61 -0.40 -3.48 16 13 C -0.06 -1.23 9.43 -39.18 -0.37 -1.60 16 14 C -0.14 -3.40 5.90 -104.69 -0.62 -4.02 16 15 C 0.39 11.52 6.91 -34.42 -0.24 11.29 16 16 O -0.51 -16.88 13.72 -16.75 -0.23 -17.11 16 17 C -0.52 -14.83 8.86 -37.42 -0.33 -15.17 16 18 H 0.07 1.82 6.02 -52.49 -0.32 1.50 16 19 C 0.08 2.24 5.50 -17.31 -0.10 2.15 16 20 N -0.74 -21.88 11.73 55.57 0.65 -21.23 16 21 Si 0.90 19.81 29.56 -169.99 -5.03 14.79 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.34 7.56 -51.93 -0.39 0.94 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.90 6.90 -51.93 -0.36 0.54 16 35 H 0.12 1.79 5.42 -52.49 -0.28 1.50 16 36 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.13 2.67 6.20 -52.49 -0.33 2.34 16 39 H 0.27 7.23 8.29 -40.82 -0.34 6.90 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -35.23 327.45 -7.68 -42.90 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.37 Total: 3.31 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -1.92 Total: -14.34 kcal Atomic # 7 Polarization: -21.88 SS G_CDS: 0.65 Total: -21.23 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.96 Total: -30.38 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.23 -7.68 -42.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.188 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds