Wall clock time and date at job start Mon Mar 30 2020 23:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47218 * 2 1 4 4 C 1.42896 * 114.00145 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.47033 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46790 * 174.99581 * 5 4 3 7 7 C 1.53001 * 109.47088 * 54.99663 * 5 4 3 8 8 O 1.42898 * 109.46837 * 294.99622 * 5 4 3 9 9 C 1.35632 * 116.99896 * 204.87893 * 8 5 4 10 10 C 1.38671 * 120.16083 * 354.57705 * 9 8 5 11 11 C 1.38086 * 120.09343 * 180.02562 * 10 9 8 12 12 C 1.38693 * 120.41740 * 359.97034 * 11 10 9 13 13 C 1.37703 * 120.31998 * 0.02562 * 12 11 10 14 14 C 1.39847 * 119.90116 * 0.27156 * 13 12 11 15 15 C 1.47527 * 120.20686 * 179.70375 * 14 13 12 16 16 O 1.21816 * 120.00194 * 179.97438 * 15 14 13 17 17 C 1.41836 * 119.99849 * 359.97438 * 15 14 13 18 18 H 1.07998 * 120.00140 * 0.02562 * 17 15 14 19 19 C 1.40325 * 119.99986 * 179.97438 * 17 15 14 20 20 N 1.30546 * 119.99969 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00003 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47219 * 90.00353 * 21 19 17 23 23 H 1.48507 * 109.46636 * 210.00152 * 21 19 17 24 24 H 1.48500 * 109.47024 * 329.99749 * 21 19 17 25 25 H 1.09005 * 109.46917 * 60.00427 * 1 2 3 26 26 H 1.09001 * 109.47049 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47221 * 300.00210 * 1 2 3 28 28 H 1.09000 * 109.47221 * 239.99790 * 2 1 3 29 29 H 1.08995 * 109.46981 * 119.99630 * 2 1 3 30 30 H 1.08997 * 109.47220 * 59.99718 * 4 3 2 31 31 H 1.09006 * 109.46743 * 299.99402 * 4 3 2 32 32 H 1.08996 * 109.47515 * 300.00095 * 7 5 4 33 33 H 1.09002 * 109.46848 * 60.00143 * 7 5 4 34 34 H 1.09006 * 109.46608 * 179.97438 * 7 5 4 35 35 H 1.07996 * 119.95471 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.79548 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.84126 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.05076 * 179.97438 * 13 12 11 39 39 H 0.96996 * 120.00156 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9385 0.0001 6 1 4.9082 3.0254 0.0893 7 6 3.1579 3.6438 1.1824 8 8 3.3975 3.5461 -1.2204 9 6 4.0741 4.6480 -1.6299 10 6 5.0542 5.2041 -0.8217 11 6 5.7419 6.3262 -1.2398 12 6 5.4601 6.9054 -2.4681 13 6 4.4903 6.3673 -3.2843 14 6 3.7814 5.2347 -2.8715 15 6 2.7365 4.6565 -3.7377 16 8 2.1216 3.6696 -3.3746 17 6 2.4479 5.2498 -4.9933 18 1 2.9933 6.1245 -5.3154 19 6 1.4544 4.6995 -5.8175 20 7 0.7955 3.6419 -5.4283 21 14 1.0748 5.4804 -7.4714 22 1 1.9323 4.8668 -8.5170 23 1 -0.3540 5.2558 -7.8084 24 1 1.3440 6.9392 -7.4035 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9767 -0.8907 31 1 3.8340 0.9765 0.8893 32 1 2.0751 3.5568 1.0933 33 1 3.4843 3.1803 2.1134 34 1 3.4394 4.6969 1.1831 35 1 5.2801 4.7590 0.1360 36 1 6.5040 6.7556 -0.6063 37 1 6.0039 7.7827 -2.7860 38 1 4.2742 6.8221 -4.2397 39 1 0.1085 3.2617 -5.9978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:18 Heat of formation + Delta-G solvation = -124.017078 kcal Electronic energy + Delta-G solvation = -21898.710807 eV Core-core repulsion = 18577.996020 eV Total energy + Delta-G solvation = -3320.714788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.19873 -39.33495 -38.36353 -37.73069 -34.70877 -33.72506 -32.17831 -31.52469 -30.48011 -28.65284 -27.42352 -24.53794 -23.90602 -23.70394 -21.62683 -21.49395 -19.12186 -18.43707 -17.62965 -17.35288 -17.00115 -16.70568 -16.05747 -15.98522 -15.66424 -15.23611 -14.94790 -14.66105 -14.41154 -14.13476 -13.82354 -13.71780 -13.26174 -13.22111 -13.06743 -12.93795 -12.69916 -12.63298 -12.31742 -12.26827 -12.17068 -12.06877 -11.86939 -11.60040 -11.55697 -10.95251 -10.54545 -9.69594 -9.42074 -8.92227 -8.24218 -6.98394 0.30001 0.64797 1.36295 1.38697 1.53883 2.22571 2.32289 2.44278 2.74753 2.94983 3.74658 3.83583 3.95058 3.99495 4.07838 4.12694 4.13659 4.28404 4.35205 4.37720 4.45089 4.54173 4.59315 4.63801 4.73868 4.80405 4.85429 4.97642 5.00452 5.20289 5.22449 5.25303 5.30155 5.46187 5.58098 5.74520 5.99024 6.10818 6.30700 6.73243 6.77000 6.95957 8.37857 8.59912 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.006762 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.449463 B = 4139.818249 C = 6190.953703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.406 6.406 4 C 0.069 3.931 5 C 0.063 3.937 6 H 0.106 0.894 7 C -0.162 4.162 8 O -0.301 6.301 9 C 0.131 3.869 10 C -0.226 4.226 11 C -0.071 4.071 12 C -0.171 4.171 13 C -0.064 4.064 14 C -0.199 4.199 15 C 0.365 3.635 16 O -0.569 6.569 17 C -0.553 4.553 18 H 0.091 0.909 19 C 0.022 3.978 20 N -0.793 5.793 21 Si 0.994 3.006 22 H -0.258 1.258 23 H -0.270 1.270 24 H -0.245 1.245 25 H 0.032 0.968 26 H 0.097 0.903 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.108 0.892 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.156 0.844 38 H 0.131 0.869 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.461 -0.415 11.295 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.326 6.326 4 C -0.008 4.008 5 C 0.007 3.993 6 H 0.123 0.877 7 C -0.219 4.219 8 O -0.214 6.214 9 C 0.084 3.916 10 C -0.244 4.244 11 C -0.089 4.089 12 C -0.188 4.188 13 C -0.082 4.082 14 C -0.200 4.200 15 C 0.262 3.738 16 O -0.460 6.460 17 C -0.584 4.584 18 H 0.109 0.891 19 C -0.196 4.196 20 N -0.423 5.423 21 Si 0.813 3.187 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.168 1.168 25 H 0.052 0.948 26 H 0.116 0.884 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.126 0.874 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.171 0.829 36 H 0.183 0.817 37 H 0.173 0.827 38 H 0.149 0.851 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.764 -0.981 11.417 13.842 hybrid contribution -0.317 -0.146 -0.892 0.958 sum 7.448 -1.128 10.525 12.942 Atomic orbital electron populations 1.21745 0.93632 1.03266 1.01918 1.22626 0.96131 0.83112 1.00602 1.88011 1.21366 1.27756 1.95450 1.22669 0.82048 0.94510 1.01528 1.22923 0.99833 0.92468 0.84068 0.87687 1.22164 1.01326 1.00803 0.97576 1.86571 1.55222 1.39382 1.40216 1.19727 0.91577 0.87327 0.92923 1.21467 1.00115 1.01226 1.01627 1.21442 0.97983 0.93581 0.95866 1.21359 0.99662 1.02440 0.95388 1.21466 0.93967 0.92926 0.99847 1.21272 1.03182 1.00037 0.95549 1.18780 0.82529 0.85119 0.87386 1.90515 1.51820 1.27946 1.75753 1.21416 1.19432 1.14033 1.03541 0.89125 1.27261 0.93974 0.94190 1.04171 1.70161 1.16570 1.18303 1.37276 0.85078 0.78205 0.79978 0.75468 1.18247 1.19471 1.16821 0.94845 0.88386 0.91611 0.94478 0.90422 0.94436 0.87442 0.93629 0.87941 0.92034 0.82913 0.81731 0.82666 0.85133 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.16 10.28 71.98 0.74 -3.42 16 2 C 0.05 1.51 6.66 71.98 0.48 1.99 16 3 O -0.41 -15.43 9.43 -144.34 -1.36 -16.79 16 4 C 0.07 2.18 5.81 71.98 0.42 2.60 16 5 C 0.06 2.12 2.63 30.60 0.08 2.20 16 6 H 0.11 2.81 6.32 -2.39 -0.02 2.80 16 7 C -0.16 -4.67 8.97 71.98 0.65 -4.03 16 8 O -0.30 -14.74 7.85 -64.78 -0.51 -15.25 16 9 C 0.13 6.04 6.62 22.90 0.15 6.20 16 10 C -0.23 -7.52 8.23 22.34 0.18 -7.34 16 11 C -0.07 -1.98 10.04 22.34 0.22 -1.76 16 12 C -0.17 -5.31 10.02 22.25 0.22 -5.09 16 13 C -0.06 -2.66 9.43 22.53 0.21 -2.45 16 14 C -0.20 -10.33 5.90 -19.91 -0.12 -10.45 16 15 C 0.36 23.21 6.91 25.61 0.18 23.39 16 16 O -0.57 -41.03 13.72 16.16 0.22 -40.81 16 17 C -0.55 -33.06 8.86 23.67 0.21 -32.85 16 18 H 0.09 4.82 6.02 -2.91 -0.02 4.80 16 19 C 0.02 1.25 5.50 85.39 0.47 1.72 16 20 N -0.79 -50.13 11.73 21.88 0.26 -49.87 16 21 Si 0.99 41.72 29.56 68.60 2.03 43.75 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 25 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.04 1.60 7.56 -2.39 -0.02 1.58 16 33 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.06 1.72 6.90 -2.38 -0.02 1.71 16 35 H 0.15 3.94 5.42 -2.91 -0.02 3.93 16 36 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 38 H 0.13 5.28 6.20 -2.91 -0.02 5.27 16 39 H 0.28 15.74 8.29 -92.71 -0.77 14.97 16 Total: -1.00 -87.82 327.45 5.78 -82.04 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 1.05 Total: 26.23 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 4.10 Total: -29.28 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.26 Total: -49.87 kcal Atomic # 8 Polarization: -71.21 SS G_CDS: -1.65 Total: -72.86 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -87.82 5.78 -82.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.977 kcal (2) G-P(sol) polarization free energy of solvation -87.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds