Wall clock time and date at job start Mon Mar 30 2020 23:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.46883 * 2 1 4 4 C 1.42900 * 113.99650 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47758 * 330.00074 * 4 3 2 6 6 C 1.53002 * 109.46866 * 90.00577 * 4 3 2 7 7 C 1.53005 * 109.47093 * 209.99904 * 4 3 2 8 8 O 1.42900 * 109.46997 * 295.00225 * 7 4 3 9 9 C 1.35633 * 116.99747 * 179.97438 * 8 7 4 10 10 C 1.38677 * 120.16178 * 0.25718 * 9 8 7 11 11 C 1.38093 * 120.09117 * 180.29942 * 10 9 8 12 12 C 1.38688 * 120.41346 * 359.69753 * 11 10 9 13 13 C 1.37700 * 120.32714 * 0.02562 * 12 11 10 14 14 C 1.39849 * 119.89734 * 0.02562 * 13 12 11 15 15 C 1.47527 * 120.20266 * 179.97438 * 14 13 12 16 16 O 1.21813 * 120.00014 * 179.97438 * 15 14 13 17 17 C 1.41833 * 120.00077 * 359.97438 * 15 14 13 18 18 H 1.08002 * 120.00286 * 0.02562 * 17 15 14 19 19 C 1.40328 * 119.99985 * 179.72217 * 17 15 14 20 20 N 1.30544 * 119.99970 * 0.28013 * 19 17 15 21 21 Si 1.86803 * 120.00016 * 180.27825 * 19 17 15 22 22 H 1.48498 * 109.46807 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 120.00077 * 21 19 17 24 24 H 1.48506 * 109.46902 * 240.00328 * 21 19 17 25 25 H 1.09004 * 109.47420 * 300.00385 * 1 2 3 26 26 H 1.09007 * 109.47118 * 59.99801 * 1 2 3 27 27 H 1.09001 * 109.47301 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47003 * 240.00205 * 2 1 3 29 29 H 1.08998 * 109.46654 * 119.99523 * 2 1 3 30 30 H 1.09001 * 109.46894 * 180.02562 * 6 4 3 31 31 H 1.09000 * 109.46767 * 299.99185 * 6 4 3 32 32 H 1.08998 * 109.47787 * 59.99537 * 6 4 3 33 33 H 1.09002 * 109.46646 * 175.00236 * 7 4 3 34 34 H 1.09001 * 109.47055 * 55.00143 * 7 4 3 35 35 H 1.07997 * 119.95415 * 0.02562 * 10 9 8 36 36 H 1.08000 * 119.79109 * 179.71536 * 11 10 9 37 37 H 1.08008 * 119.83328 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.05269 * 180.02562 * 13 12 11 39 39 H 0.96991 * 119.99746 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8632 0.6017 0.5147 6 6 3.9398 1.5003 -1.4417 7 6 3.8403 2.7459 0.7218 8 8 3.3719 3.8761 -0.0166 9 6 3.6527 5.1023 0.4906 10 6 4.3692 5.2203 1.6720 11 6 4.6489 6.4694 2.1903 12 6 4.2228 7.6138 1.5329 13 6 3.5151 7.5167 0.3557 14 6 3.2234 6.2584 -0.1805 15 6 2.4652 6.1465 -1.4411 16 8 2.2136 5.0487 -1.9051 17 6 2.0291 7.3172 -2.1127 18 1 2.2525 8.2906 -1.7015 19 6 1.3129 7.2109 -3.3147 20 7 1.0432 6.0343 -3.8120 21 14 0.7453 8.7529 -4.2033 22 1 1.1739 9.9512 -3.4381 23 1 1.3455 8.7911 -5.5610 24 1 -0.7354 8.7421 -4.3168 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.0264 1.5859 -1.4413 31 1 3.6481 0.5843 -1.9555 32 1 3.5075 2.3587 -1.9559 33 1 4.9267 2.7881 0.8004 34 1 3.4030 2.7575 1.7202 35 1 4.7050 4.3341 2.1898 36 1 5.2033 6.5555 3.1131 37 1 4.4471 8.5860 1.9465 38 1 3.1857 8.4108 -0.1527 39 1 0.5479 5.9609 -4.6426 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233527774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:38 Heat of formation + Delta-G solvation = -103.296912 kcal Electronic energy + Delta-G solvation = -21839.069409 eV Core-core repulsion = 18519.253115 eV Total energy + Delta-G solvation = -3319.816294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.54533 -38.14562 -36.64685 -35.87734 -32.65800 -32.42806 -30.49779 -30.07126 -28.93693 -26.88779 -26.19928 -22.90037 -22.61483 -21.97154 -20.46197 -19.61222 -17.58788 -16.62421 -16.31728 -15.59750 -15.37828 -15.24634 -14.90558 -14.45757 -14.22038 -13.61198 -13.20629 -13.12553 -12.87136 -12.61497 -12.45165 -12.09781 -12.00763 -11.66393 -11.40408 -11.32809 -11.19529 -11.14596 -11.00332 -10.83720 -10.49877 -10.42349 -10.35680 -10.19547 -9.98149 -9.29051 -8.87073 -8.13515 -7.34418 -7.24347 -6.13911 -4.74045 1.88195 2.15384 3.10860 3.19614 3.23914 3.81855 3.87367 4.10138 4.16800 4.74959 4.96178 5.12167 5.23454 5.28114 5.35478 5.40649 5.45507 5.46094 5.52749 5.67668 5.74815 5.84965 5.97513 6.00401 6.02725 6.07471 6.16186 6.26184 6.29108 6.40679 6.76181 6.86491 7.00300 7.01773 7.23655 7.38152 7.49569 7.58021 8.16642 8.23334 8.93705 8.99698 10.47474 10.71996 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.006331 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.211376 B = 4421.618748 C = 6098.758359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.363 6.363 4 C 0.097 3.903 5 H 0.068 0.932 6 C -0.176 4.176 7 C 0.056 3.944 8 O -0.254 6.254 9 C 0.150 3.850 10 C -0.231 4.231 11 C -0.093 4.093 12 C -0.178 4.178 13 C -0.059 4.059 14 C -0.136 4.136 15 C 0.390 3.610 16 O -0.511 6.511 17 C -0.523 4.523 18 H 0.071 0.929 19 C 0.081 3.919 20 N -0.737 5.737 21 Si 0.902 3.098 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.703 -6.976 8.567 12.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.039 3.961 5 H 0.086 0.914 6 C -0.233 4.233 7 C -0.021 4.021 8 O -0.165 6.165 9 C 0.103 3.897 10 C -0.250 4.250 11 C -0.112 4.112 12 C -0.196 4.196 13 C -0.077 4.077 14 C -0.138 4.138 15 C 0.283 3.717 16 O -0.398 6.398 17 C -0.554 4.554 18 H 0.089 0.911 19 C -0.141 4.141 20 N -0.367 5.367 21 Si 0.726 3.274 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.152 0.848 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.287 -7.565 8.050 11.849 hybrid contribution 0.167 0.602 0.003 0.625 sum 4.454 -6.963 8.053 11.540 Atomic orbital electron populations 1.21723 0.93885 1.01594 1.03633 1.22468 0.95795 0.84578 0.99261 1.88178 1.20006 1.25131 1.94926 1.22059 0.82330 0.94942 0.96769 0.91430 1.22233 1.00669 1.03944 0.96473 1.22865 0.98048 0.85834 0.95337 1.86536 1.72558 1.10568 1.46829 1.19455 0.93128 0.85609 0.91458 1.21069 1.07147 0.98359 0.98461 1.20790 0.99338 0.92120 0.98906 1.20932 1.03361 0.97734 0.97587 1.21403 0.94970 0.97253 0.94097 1.21569 1.01842 0.89672 1.00712 1.17994 0.80704 0.90510 0.82457 1.90564 1.54457 1.29087 1.65658 1.20924 1.33142 0.94893 1.06489 0.91068 1.25945 0.94489 0.96543 0.97147 1.69988 1.26562 1.24052 1.16063 0.86395 0.78867 0.82525 0.79569 1.18483 1.20006 1.19994 0.91970 0.91379 0.91599 0.93658 0.94092 0.92326 0.93064 0.88771 0.91615 0.92248 0.86586 0.87027 0.86861 0.84829 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 37.16 0.38 -1.53 16 2 C 0.06 0.75 6.47 37.16 0.24 1.00 16 3 O -0.36 -6.61 9.95 -40.08 -0.40 -7.01 16 4 C 0.10 1.52 3.13 -26.73 -0.08 1.44 16 5 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 6 C -0.18 -2.91 9.33 37.16 0.35 -2.57 16 7 C 0.06 0.93 4.61 37.16 0.17 1.11 16 8 O -0.25 -5.83 7.30 -44.40 -0.32 -6.16 16 9 C 0.15 3.40 6.71 -38.61 -0.26 3.14 16 10 C -0.23 -4.21 9.03 -39.47 -0.36 -4.56 16 11 C -0.09 -1.54 10.04 -39.47 -0.40 -1.94 16 12 C -0.18 -3.10 10.02 -39.61 -0.40 -3.50 16 13 C -0.06 -1.23 9.43 -39.18 -0.37 -1.60 16 14 C -0.14 -3.38 5.90 -104.69 -0.62 -4.00 16 15 C 0.39 11.49 6.91 -34.42 -0.24 11.25 16 16 O -0.51 -16.69 13.71 -16.75 -0.23 -16.92 16 17 C -0.52 -14.79 8.86 -37.42 -0.33 -15.12 16 18 H 0.07 1.83 6.02 -52.49 -0.32 1.51 16 19 C 0.08 2.24 5.50 -17.31 -0.10 2.15 16 20 N -0.74 -21.79 11.73 55.57 0.65 -21.14 16 21 Si 0.90 19.80 29.56 -169.99 -5.03 14.78 16 22 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.57 7.87 -51.93 -0.41 0.16 16 29 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.75 7.87 -51.93 -0.41 0.34 16 32 H 0.09 2.05 7.56 -51.93 -0.39 1.66 16 33 H 0.07 0.93 7.65 -51.93 -0.40 0.53 16 34 H 0.06 0.93 7.67 -51.93 -0.40 0.53 16 35 H 0.12 1.75 6.30 -52.49 -0.33 1.42 16 36 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.13 2.68 6.20 -52.49 -0.33 2.35 16 39 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -34.94 329.80 -7.83 -42.77 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.47 Total: 3.45 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -2.00 Total: -14.75 kcal Atomic # 7 Polarization: -21.79 SS G_CDS: 0.65 Total: -21.14 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.95 Total: -30.08 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.94 -7.83 -42.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233527774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.527 kcal (2) G-P(sol) polarization free energy of solvation -34.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds