Wall clock time and date at job start Mon Mar 30 2020 23:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.46883 * 2 1 4 4 C 1.42900 * 113.99650 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47758 * 330.00074 * 4 3 2 6 6 C 1.53002 * 109.46866 * 90.00577 * 4 3 2 7 7 C 1.53005 * 109.47093 * 209.99904 * 4 3 2 8 8 O 1.42900 * 109.46997 * 295.00225 * 7 4 3 9 9 C 1.35633 * 116.99747 * 179.97438 * 8 7 4 10 10 C 1.38677 * 120.16178 * 0.25718 * 9 8 7 11 11 C 1.38093 * 120.09117 * 180.29942 * 10 9 8 12 12 C 1.38688 * 120.41346 * 359.69753 * 11 10 9 13 13 C 1.37700 * 120.32714 * 0.02562 * 12 11 10 14 14 C 1.39849 * 119.89734 * 0.02562 * 13 12 11 15 15 C 1.47527 * 120.20266 * 179.97438 * 14 13 12 16 16 O 1.21813 * 120.00014 * 179.97438 * 15 14 13 17 17 C 1.41833 * 120.00077 * 359.97438 * 15 14 13 18 18 H 1.08002 * 120.00286 * 0.02562 * 17 15 14 19 19 C 1.40328 * 119.99985 * 179.72217 * 17 15 14 20 20 N 1.30544 * 119.99970 * 0.28013 * 19 17 15 21 21 Si 1.86803 * 120.00016 * 180.27825 * 19 17 15 22 22 H 1.48498 * 109.46807 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 120.00077 * 21 19 17 24 24 H 1.48506 * 109.46902 * 240.00328 * 21 19 17 25 25 H 1.09004 * 109.47420 * 300.00385 * 1 2 3 26 26 H 1.09007 * 109.47118 * 59.99801 * 1 2 3 27 27 H 1.09001 * 109.47301 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47003 * 240.00205 * 2 1 3 29 29 H 1.08998 * 109.46654 * 119.99523 * 2 1 3 30 30 H 1.09001 * 109.46894 * 180.02562 * 6 4 3 31 31 H 1.09000 * 109.46767 * 299.99185 * 6 4 3 32 32 H 1.08998 * 109.47787 * 59.99537 * 6 4 3 33 33 H 1.09002 * 109.46646 * 175.00236 * 7 4 3 34 34 H 1.09001 * 109.47055 * 55.00143 * 7 4 3 35 35 H 1.07997 * 119.95415 * 0.02562 * 10 9 8 36 36 H 1.08000 * 119.79109 * 179.71536 * 11 10 9 37 37 H 1.08008 * 119.83328 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.05269 * 180.02562 * 13 12 11 39 39 H 0.96991 * 119.99746 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8632 0.6017 0.5147 6 6 3.9398 1.5003 -1.4417 7 6 3.8403 2.7459 0.7218 8 8 3.3719 3.8761 -0.0166 9 6 3.6527 5.1023 0.4906 10 6 4.3692 5.2203 1.6720 11 6 4.6489 6.4694 2.1903 12 6 4.2228 7.6138 1.5329 13 6 3.5151 7.5167 0.3557 14 6 3.2234 6.2584 -0.1805 15 6 2.4652 6.1465 -1.4411 16 8 2.2136 5.0487 -1.9051 17 6 2.0291 7.3172 -2.1127 18 1 2.2525 8.2906 -1.7015 19 6 1.3129 7.2109 -3.3147 20 7 1.0432 6.0343 -3.8120 21 14 0.7453 8.7529 -4.2033 22 1 1.1739 9.9512 -3.4381 23 1 1.3455 8.7911 -5.5610 24 1 -0.7354 8.7421 -4.3168 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.0264 1.5859 -1.4413 31 1 3.6481 0.5843 -1.9555 32 1 3.5075 2.3587 -1.9559 33 1 4.9267 2.7881 0.8004 34 1 3.4030 2.7575 1.7202 35 1 4.7050 4.3341 2.1898 36 1 5.2033 6.5555 3.1131 37 1 4.4471 8.5860 1.9465 38 1 3.1857 8.4108 -0.1527 39 1 0.5479 5.9609 -4.6426 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233527774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:37 Heat of formation + Delta-G solvation = -125.968933 kcal Electronic energy + Delta-G solvation = -21840.052541 eV Core-core repulsion = 18519.253115 eV Total energy + Delta-G solvation = -3320.799427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.06370 -39.47847 -38.34819 -37.70299 -34.68594 -33.76554 -32.14593 -31.26780 -30.43245 -28.79090 -27.71776 -24.53110 -23.79002 -23.40523 -21.81240 -21.45372 -19.07336 -18.43579 -17.81317 -17.25264 -16.83498 -16.62121 -16.25335 -16.04129 -15.65276 -15.15701 -14.92746 -14.58700 -14.33086 -14.17727 -13.97252 -13.50996 -13.41936 -13.23138 -13.03838 -12.85973 -12.67685 -12.65657 -12.38411 -12.31197 -12.05135 -11.94168 -11.79340 -11.70899 -11.65680 -10.95871 -10.48996 -9.70007 -9.40454 -8.92232 -8.23274 -6.97010 0.30357 0.65306 1.36794 1.37559 1.55560 2.23112 2.33264 2.47246 2.73995 2.95391 3.74575 3.85134 3.95581 4.01751 4.06887 4.15285 4.17012 4.25216 4.35082 4.37075 4.46512 4.52879 4.59290 4.64273 4.69911 4.82765 4.89469 4.94221 5.00401 5.20531 5.23032 5.26360 5.39508 5.47066 5.57463 5.74566 5.99916 6.10775 6.38749 6.72038 6.78214 6.96135 8.38977 8.61052 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.006331 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.211376 B = 4421.618748 C = 6098.758359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.409 6.409 4 C 0.094 3.906 5 H 0.119 0.881 6 C -0.169 4.169 7 C 0.044 3.956 8 O -0.298 6.298 9 C 0.129 3.871 10 C -0.226 4.226 11 C -0.072 4.072 12 C -0.171 4.171 13 C -0.064 4.064 14 C -0.197 4.197 15 C 0.365 3.635 16 O -0.565 6.565 17 C -0.553 4.553 18 H 0.090 0.910 19 C 0.022 3.978 20 N -0.793 5.793 21 Si 0.994 3.006 22 H -0.243 1.243 23 H -0.265 1.265 24 H -0.266 1.266 25 H 0.055 0.945 26 H 0.038 0.962 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.027 0.973 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.156 0.844 38 H 0.131 0.869 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.413 -6.254 11.303 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.329 6.329 4 C 0.037 3.963 5 H 0.136 0.864 6 C -0.226 4.226 7 C -0.031 4.031 8 O -0.210 6.210 9 C 0.082 3.918 10 C -0.245 4.245 11 C -0.089 4.089 12 C -0.189 4.189 13 C -0.083 4.083 14 C -0.199 4.199 15 C 0.262 3.738 16 O -0.457 6.457 17 C -0.584 4.584 18 H 0.108 0.892 19 C -0.195 4.195 20 N -0.423 5.423 21 Si 0.812 3.188 22 H -0.166 1.166 23 H -0.190 1.190 24 H -0.191 1.191 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.119 0.881 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.169 0.831 36 H 0.182 0.818 37 H 0.173 0.827 38 H 0.149 0.851 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.012 -6.835 10.814 14.135 hybrid contribution -0.292 0.296 -0.721 0.833 sum 5.720 -6.539 10.092 13.316 Atomic orbital electron populations 1.21774 0.93914 1.03289 1.01856 1.22741 0.95950 0.83049 1.01110 1.88146 1.21581 1.28067 1.95130 1.22288 0.81662 0.96248 0.96133 0.86379 1.22141 1.01606 1.01605 0.97276 1.23282 0.99818 0.84453 0.95519 1.86502 1.73549 1.12000 1.48991 1.19739 0.94061 0.85072 0.92940 1.21454 1.05583 1.00788 0.96638 1.21434 0.97081 0.90748 0.99676 1.21355 1.01470 1.00281 0.95771 1.21467 0.95632 0.95554 0.95602 1.21267 1.05322 0.92667 1.00597 1.18760 0.80575 0.90146 0.84285 1.90508 1.56753 1.30629 1.67773 1.21438 1.33878 0.95601 1.07521 0.89196 1.27244 0.93816 1.00737 0.97748 1.70162 1.27683 1.27481 1.16959 0.85040 0.78412 0.77286 0.78037 1.16571 1.18981 1.19119 0.92600 0.94278 0.88122 0.92933 0.90803 0.90203 0.91559 0.95348 0.88686 0.90954 0.83084 0.81784 0.82685 0.85133 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 10.28 71.98 0.74 -3.14 16 2 C 0.05 1.25 6.47 71.98 0.47 1.72 16 3 O -0.41 -15.29 9.95 -144.34 -1.44 -16.73 16 4 C 0.09 2.91 3.13 30.60 0.10 3.01 16 5 H 0.12 2.44 7.79 -2.39 -0.02 2.42 16 6 C -0.17 -5.83 9.33 71.98 0.67 -5.16 16 7 C 0.04 1.47 4.61 71.98 0.33 1.80 16 8 O -0.30 -14.44 7.30 -64.80 -0.47 -14.92 16 9 C 0.13 5.96 6.71 22.90 0.15 6.11 16 10 C -0.23 -7.62 9.03 22.34 0.20 -7.42 16 11 C -0.07 -2.03 10.04 22.34 0.22 -1.81 16 12 C -0.17 -5.38 10.02 22.25 0.22 -5.15 16 13 C -0.06 -2.70 9.43 22.53 0.21 -2.48 16 14 C -0.20 -10.25 5.90 -19.91 -0.12 -10.37 16 15 C 0.37 23.21 6.91 25.61 0.18 23.39 16 16 O -0.57 -40.48 13.71 16.17 0.22 -40.26 16 17 C -0.55 -33.08 8.86 23.67 0.21 -32.87 16 18 H 0.09 4.80 6.02 -2.91 -0.02 4.78 16 19 C 0.02 1.27 5.50 85.39 0.47 1.74 16 20 N -0.79 -50.07 11.73 21.89 0.26 -49.81 16 21 Si 0.99 41.83 29.56 68.60 2.03 43.86 16 22 H -0.24 -9.40 7.11 99.48 0.71 -8.69 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 24 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 25 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.04 1.19 8.14 -2.38 -0.02 1.18 16 27 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.28 7.87 -2.39 -0.02 1.26 16 29 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.07 1.99 7.87 -2.39 -0.02 1.97 16 32 H 0.03 1.34 7.56 -2.39 -0.02 1.32 16 33 H 0.10 2.49 7.65 -2.39 -0.02 2.47 16 34 H 0.07 2.15 7.67 -2.39 -0.02 2.13 16 35 H 0.15 3.92 6.30 -2.91 -0.02 3.90 16 36 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.13 5.32 6.20 -2.91 -0.02 5.30 16 39 H 0.28 15.68 8.29 -92.71 -0.77 14.92 16 Total: -1.00 -87.69 329.80 5.70 -81.99 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 1.04 Total: 26.50 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 4.06 Total: -30.63 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.26 Total: -49.81 kcal Atomic # 8 Polarization: -70.22 SS G_CDS: -1.69 Total: -71.91 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -87.69 5.70 -81.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233527774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.983 kcal (2) G-P(sol) polarization free energy of solvation -87.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds