Wall clock time and date at job start Tue Mar 31 2020 00:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.47481 * 110.99885 * 265.96478 * 10 9 7 12 12 C 1.53509 * 87.93073 * 221.29687 * 11 10 9 13 13 O 1.42901 * 114.17232 * 272.37577 * 12 11 10 14 14 C 1.35702 * 117.00137 * 243.84287 * 13 12 11 15 15 N 1.31135 * 127.09728 * 0.02778 * 14 13 12 16 16 O 1.21444 * 111.58548 * 179.97438 * 15 14 13 17 17 C 1.33244 * 111.43309 * 359.95849 * 16 15 14 18 18 C 1.35329 * 106.57044 * 359.82804 * 17 16 15 19 19 C 1.50068 * 124.92128 * 180.02562 * 18 17 16 20 20 C 1.53545 * 108.23293 * 344.08285 * 19 18 17 21 21 C 1.53108 * 109.50900 * 49.21232 * 20 19 18 22 22 C 1.50587 * 129.63695 * 180.19467 * 17 16 15 23 23 C 1.47489 * 110.99948 * 169.99650 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 26 26 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 27 27 H 1.08990 * 113.47671 * 336.06796 * 11 10 9 28 28 H 1.09001 * 113.47203 * 106.53351 * 11 10 9 29 29 H 1.08999 * 114.34242 * 139.68978 * 12 11 10 30 30 H 1.09000 * 109.70862 * 103.76509 * 19 18 17 31 31 H 1.09000 * 109.71359 * 224.35189 * 19 18 17 32 32 H 1.09001 * 109.46787 * 169.22465 * 20 19 18 33 33 H 1.09001 * 109.46009 * 289.20098 * 20 19 18 34 34 H 1.08997 * 109.43293 * 50.22883 * 21 20 19 35 35 H 1.09003 * 109.43200 * 170.13151 * 21 20 19 36 36 H 1.09003 * 109.69669 * 282.95007 * 22 17 16 37 37 H 1.08999 * 109.69248 * 43.53330 * 22 17 16 38 38 H 1.08997 * 113.47356 * 253.46676 * 23 10 9 39 39 H 1.08999 * 113.47165 * 23.87538 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 4.2681 -3.0454 1.3734 12 6 5.5417 -3.7153 0.8389 13 8 5.3426 -5.0420 0.3465 14 6 5.9804 -6.0446 1.0018 15 7 6.7659 -5.9330 2.0459 16 8 7.1871 -7.0137 2.4057 17 6 6.7264 -7.9973 1.6338 18 6 5.9306 -7.4185 0.7049 19 6 5.1965 -8.1553 -0.3769 20 6 5.8031 -9.5607 -0.4977 21 6 5.8988 -10.1974 0.8914 22 6 6.9807 -9.4795 1.7126 23 6 5.4559 -2.6254 -0.2387 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 -0.8895 26 1 3.8746 -0.6808 0.8905 27 1 4.4654 -2.2360 2.0761 28 1 3.5271 -3.7542 1.7430 29 1 6.4064 -3.6257 1.4964 30 1 4.1404 -8.2318 -0.1180 31 1 5.3056 -7.6245 -1.3226 32 1 5.1696 -10.1761 -1.1365 33 1 6.7993 -9.4899 -0.9343 34 1 4.9371 -10.1112 1.3970 35 1 6.1622 -11.2503 0.7903 36 1 7.9687 -9.7046 1.3109 37 1 6.9220 -9.8076 2.7503 38 1 5.7214 -2.9782 -1.2352 39 1 5.9699 -1.7034 0.0329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234455069.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:48 Heat of formation + Delta-G solvation = 65.312646 kcal Electronic energy + Delta-G solvation = -21353.979122 eV Core-core repulsion = 18073.767039 eV Total energy + Delta-G solvation = -3280.212084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.91876 -40.05668 -37.92019 -37.36516 -33.05272 -32.58889 -31.08234 -30.32643 -29.79135 -25.79149 -25.51813 -24.63393 -23.08805 -22.50478 -21.36245 -20.35502 -18.84869 -18.04247 -17.75633 -16.79862 -16.40012 -15.54141 -15.18244 -15.06302 -14.61157 -14.24383 -14.16204 -13.81577 -13.70732 -13.51939 -13.25267 -12.94501 -12.61809 -12.45979 -12.18723 -11.57861 -11.32624 -11.27573 -11.15349 -11.06285 -10.82443 -10.59644 -10.38791 -10.06745 -9.81945 -9.37800 -9.19195 -8.97928 -8.59633 -8.03846 -6.06324 -4.03955 1.35208 2.28301 2.73373 3.00569 3.25318 3.33285 3.34121 4.15226 4.39395 4.41118 4.47348 4.51414 4.59406 4.64317 4.82892 4.95469 5.04352 5.13449 5.19439 5.21301 5.23728 5.44859 5.51341 5.62532 5.68095 5.69566 5.72781 5.81719 5.91136 5.96537 6.00307 6.08026 6.18512 6.40477 6.64531 7.25873 7.27133 7.65016 7.78610 8.24559 8.61307 9.04764 9.54359 11.07100 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035972 B = 0.003377 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.189840 B = 8288.710796 C = 8674.771602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.081 0.919 9 C 0.125 3.875 10 N -0.444 5.444 11 C -0.001 4.001 12 C 0.049 3.951 13 O -0.242 6.242 14 C 0.228 3.772 15 N -0.417 5.417 16 O 0.100 5.900 17 C -0.018 4.018 18 C -0.205 4.205 19 C -0.042 4.042 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.035 4.035 23 C -0.005 4.005 24 H 0.264 0.736 25 H 0.030 0.970 26 H -0.003 1.003 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.452 -20.088 2.371 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.099 0.901 9 C -0.002 4.002 10 N -0.167 5.167 11 C -0.131 4.131 12 C -0.008 4.008 13 O -0.147 6.147 14 C 0.031 3.969 15 N -0.147 5.147 16 O 0.043 5.957 17 C -0.083 4.083 18 C -0.209 4.209 19 C -0.080 4.080 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.073 4.073 23 C -0.135 4.135 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.014 0.986 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.018 -19.249 2.392 25.156 hybrid contribution 0.493 1.481 0.141 1.567 sum 16.512 -17.768 2.533 24.387 Atomic orbital electron populations 1.69896 1.06111 1.26834 1.50975 1.24932 0.94781 0.98832 0.94879 0.86858 0.80333 0.84061 0.78484 1.20269 1.19262 1.20995 1.20948 0.88434 0.94868 1.50240 0.90133 1.20778 0.98336 0.85411 0.95704 1.69061 1.09711 1.23365 1.14559 1.24227 0.95611 0.99186 0.94028 1.23686 0.99501 0.79560 0.98085 1.86325 1.64150 1.13823 1.50390 1.21565 0.94057 0.89609 0.91641 1.74505 1.19551 1.03484 1.17155 1.84693 1.55298 1.10009 1.45711 1.23939 0.97745 0.94154 0.92434 1.20045 1.07027 0.90032 1.03812 1.19910 0.98602 0.93814 0.95626 1.21689 1.01755 0.95554 0.96927 1.21687 0.98820 0.99340 0.95770 1.20284 1.00828 0.83549 1.02666 1.24119 0.93913 0.95722 0.99705 0.92619 0.95238 0.98552 0.90255 0.89527 0.88842 0.90053 0.89927 0.90690 0.91430 0.90882 0.90202 0.88737 0.88985 0.89380 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.51 -14.99 9.94 -34.44 -0.34 -15.34 16 8 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 9 C 0.12 3.11 3.64 -4.98 -0.02 3.09 16 10 N -0.44 -9.90 6.32 -246.10 -1.55 -11.46 16 11 C 0.00 -0.02 7.55 -7.54 -0.06 -0.08 16 12 C 0.05 0.84 4.64 -26.20 -0.12 0.72 16 13 O -0.24 -4.32 10.25 -18.81 -0.19 -4.51 16 14 C 0.23 3.64 7.99 -16.94 -0.14 3.51 16 15 N -0.42 -6.53 11.08 30.42 0.34 -6.19 16 16 O 0.10 1.32 11.19 19.05 0.21 1.54 16 17 C -0.02 -0.19 7.38 -35.40 -0.26 -0.46 16 18 C -0.21 -2.62 6.09 -105.06 -0.64 -3.26 16 19 C -0.04 -0.43 6.30 -27.91 -0.18 -0.60 16 20 C -0.12 -0.83 5.91 -26.39 -0.16 -0.98 16 21 C -0.12 -0.66 5.90 -26.35 -0.16 -0.82 16 22 C -0.04 -0.22 6.31 -27.61 -0.17 -0.39 16 23 C -0.01 -0.09 7.52 -7.54 -0.06 -0.15 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 25 H 0.03 0.74 7.14 -51.93 -0.37 0.37 16 26 H 0.00 -0.08 6.73 -51.93 -0.35 -0.43 16 27 H 0.08 1.46 7.42 -51.93 -0.39 1.08 16 28 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 29 H 0.09 1.48 7.27 -51.93 -0.38 1.10 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.08 1.26 7.91 -51.93 -0.41 0.85 16 LS Contribution 319.86 15.07 4.82 4.82 Total: -1.00 -33.75 319.86 -8.37 -42.12 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -5.71 Total: -3.15 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -2.39 Total: -12.86 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.44 Total: -45.01 kcal Atomic # 8 Polarization: -2.99 SS G_CDS: 0.02 Total: -2.97 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.75 -8.37 -42.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234455069.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.432 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds