Wall clock time and date at job start Tue Mar 31 2020 00:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.47481 * 110.99885 * 265.96478 * 10 9 7 12 12 C 1.53509 * 87.93073 * 221.29687 * 11 10 9 13 13 O 1.42901 * 114.17232 * 272.37577 * 12 11 10 14 14 C 1.35702 * 117.00137 * 243.84287 * 13 12 11 15 15 N 1.31135 * 127.09728 * 0.02778 * 14 13 12 16 16 O 1.21444 * 111.58548 * 179.97438 * 15 14 13 17 17 C 1.33244 * 111.43309 * 359.95849 * 16 15 14 18 18 C 1.35329 * 106.57044 * 359.82804 * 17 16 15 19 19 C 1.50068 * 124.92128 * 180.02562 * 18 17 16 20 20 C 1.53545 * 108.23293 * 344.08285 * 19 18 17 21 21 C 1.53108 * 109.50900 * 49.21232 * 20 19 18 22 22 C 1.50587 * 129.63695 * 180.19467 * 17 16 15 23 23 C 1.47489 * 110.99948 * 169.99650 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 26 26 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 27 27 H 1.08990 * 113.47671 * 336.06796 * 11 10 9 28 28 H 1.09001 * 113.47203 * 106.53351 * 11 10 9 29 29 H 1.08999 * 114.34242 * 139.68978 * 12 11 10 30 30 H 1.09000 * 109.70862 * 103.76509 * 19 18 17 31 31 H 1.09000 * 109.71359 * 224.35189 * 19 18 17 32 32 H 1.09001 * 109.46787 * 169.22465 * 20 19 18 33 33 H 1.09001 * 109.46009 * 289.20098 * 20 19 18 34 34 H 1.08997 * 109.43293 * 50.22883 * 21 20 19 35 35 H 1.09003 * 109.43200 * 170.13151 * 21 20 19 36 36 H 1.09003 * 109.69669 * 282.95007 * 22 17 16 37 37 H 1.08999 * 109.69248 * 43.53330 * 22 17 16 38 38 H 1.08997 * 113.47356 * 253.46676 * 23 10 9 39 39 H 1.08999 * 113.47165 * 23.87538 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 4.2681 -3.0454 1.3734 12 6 5.5417 -3.7153 0.8389 13 8 5.3426 -5.0420 0.3465 14 6 5.9804 -6.0446 1.0018 15 7 6.7659 -5.9330 2.0459 16 8 7.1871 -7.0137 2.4057 17 6 6.7264 -7.9973 1.6338 18 6 5.9306 -7.4185 0.7049 19 6 5.1965 -8.1553 -0.3769 20 6 5.8031 -9.5607 -0.4977 21 6 5.8988 -10.1974 0.8914 22 6 6.9807 -9.4795 1.7126 23 6 5.4559 -2.6254 -0.2387 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 -0.8895 26 1 3.8746 -0.6808 0.8905 27 1 4.4654 -2.2360 2.0761 28 1 3.5271 -3.7542 1.7430 29 1 6.4064 -3.6257 1.4964 30 1 4.1404 -8.2318 -0.1180 31 1 5.3056 -7.6245 -1.3226 32 1 5.1696 -10.1761 -1.1365 33 1 6.7993 -9.4899 -0.9343 34 1 4.9371 -10.1112 1.3970 35 1 6.1622 -11.2503 0.7903 36 1 7.9687 -9.7046 1.3109 37 1 6.9220 -9.8076 2.7503 38 1 5.7214 -2.9782 -1.2352 39 1 5.9699 -1.7034 0.0329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234455069.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:47 Heat of formation + Delta-G solvation = 39.358301 kcal Electronic energy + Delta-G solvation = -21355.104587 eV Core-core repulsion = 18073.767039 eV Total energy + Delta-G solvation = -3281.337549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.98109 -41.53830 -38.95345 -38.41233 -35.03661 -33.84418 -31.95020 -31.64752 -31.11139 -27.61691 -27.05179 -25.40953 -24.09735 -23.62482 -23.06989 -21.43941 -19.98915 -19.12265 -18.98181 -18.82162 -17.56618 -17.12777 -16.49347 -16.36486 -15.93593 -15.49878 -15.21693 -14.88989 -14.72896 -14.67528 -14.52836 -14.29150 -14.02971 -13.70716 -13.25336 -13.22401 -13.00122 -12.49291 -12.07186 -11.97408 -11.82027 -11.80274 -11.75696 -11.65114 -11.55390 -11.48220 -10.84710 -10.20149 -10.07850 -9.72817 -8.34129 -6.39636 0.41392 1.17158 1.30769 1.33918 1.44714 1.56209 2.13904 2.29954 2.97255 3.07824 3.10301 3.17318 3.62527 3.71935 3.77646 4.00818 4.07163 4.24392 4.25256 4.28884 4.32002 4.43573 4.46774 4.52045 4.60151 4.63125 4.69816 4.76487 4.92410 4.93589 5.03347 5.20144 5.21136 5.35130 5.38385 5.46628 5.60571 5.85040 6.03806 6.47528 6.66028 7.21130 7.23628 8.83405 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035972 B = 0.003377 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.189840 B = 8288.710796 C = 8674.771602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.245 1.245 6 H -0.279 1.279 7 C -0.524 4.524 8 H 0.025 0.975 9 C 0.136 3.864 10 N -0.482 5.482 11 C -0.005 4.005 12 C 0.066 3.934 13 O -0.263 6.263 14 C 0.198 3.802 15 N -0.437 5.437 16 O 0.100 5.900 17 C 0.002 3.998 18 C -0.227 4.227 19 C -0.045 4.045 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.035 4.035 23 C 0.002 3.998 24 H 0.269 0.731 25 H 0.035 0.965 26 H 0.011 0.989 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.430 -20.872 2.704 28.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.169 1.169 6 H -0.205 1.205 7 C -0.563 4.563 8 H 0.044 0.956 9 C 0.008 3.992 10 N -0.205 5.205 11 C -0.135 4.135 12 C 0.009 3.991 13 O -0.169 6.169 14 C 0.002 3.998 15 N -0.167 5.167 16 O 0.042 5.958 17 C -0.063 4.063 18 C -0.232 4.232 19 C -0.083 4.083 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.073 4.073 23 C -0.127 4.127 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.029 0.971 27 H 0.111 0.889 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 19.016 -20.061 2.730 27.776 hybrid contribution -0.486 1.535 0.061 1.611 sum 18.529 -18.526 2.791 26.351 Atomic orbital electron populations 1.70070 1.08367 1.28369 1.52154 1.25993 0.95752 1.03557 0.93962 0.85590 0.79437 0.77752 0.79413 1.18784 1.16858 1.20458 1.21191 0.91260 0.93084 1.50719 0.95637 1.20557 0.94986 0.87374 0.96254 1.68958 1.13207 1.21837 1.16504 1.24279 0.96485 0.99497 0.93224 1.23491 0.98411 0.79529 0.97670 1.86276 1.65105 1.14375 1.51174 1.21994 0.95013 0.90302 0.92480 1.74460 1.20015 1.04873 1.17331 1.84642 1.55101 1.10117 1.45902 1.24822 0.95483 0.95580 0.90377 1.20459 1.08298 0.89026 1.05379 1.20003 0.98209 0.95848 0.94205 1.21697 1.02065 0.93274 0.98366 1.21736 0.98341 1.00831 0.94445 1.20664 1.02328 0.79792 1.04470 1.24195 0.90980 0.97015 1.00470 0.92238 0.94731 0.97117 0.88913 0.91677 0.87080 0.91004 0.91254 0.89241 0.90723 0.91675 0.86987 0.86105 0.86756 0.88672 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.27 13.96 21.45 0.30 -60.97 16 2 C 0.00 0.27 5.47 84.66 0.46 0.74 16 3 Si 0.96 44.46 27.47 68.60 1.88 46.34 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.52 -32.13 9.94 25.60 0.25 -31.88 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 9 C 0.14 6.73 3.64 85.55 0.31 7.05 16 10 N -0.48 -21.75 6.32 -932.92 -5.89 -27.64 16 11 C -0.01 -0.21 7.55 83.58 0.63 0.42 16 12 C 0.07 2.26 4.64 30.94 0.14 2.40 16 13 O -0.26 -9.66 10.25 -90.22 -0.93 -10.58 16 14 C 0.20 6.42 7.99 85.39 0.68 7.10 16 15 N -0.44 -13.60 11.08 -171.56 -1.90 -15.50 16 16 O 0.10 2.54 11.19 78.20 0.87 3.41 16 17 C 0.00 0.05 7.38 24.98 0.18 0.23 16 18 C -0.23 -5.78 6.09 -20.15 -0.12 -5.90 16 19 C -0.04 -0.92 6.30 29.83 0.19 -0.73 16 20 C -0.12 -1.33 5.91 30.81 0.18 -1.15 16 21 C -0.12 -0.91 5.90 30.84 0.18 -0.72 16 22 C -0.04 -0.31 6.31 30.02 0.19 -0.12 16 23 C 0.00 0.07 7.52 83.57 0.63 0.70 16 24 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 25 H 0.03 1.67 7.14 -2.38 -0.02 1.65 16 26 H 0.01 0.51 6.73 -2.39 -0.02 0.50 16 27 H 0.09 3.38 7.42 -2.39 -0.02 3.37 16 28 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.11 3.40 7.27 -2.39 -0.02 3.38 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 34 H 0.06 0.64 8.12 -2.39 -0.02 0.62 16 35 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.12 0.55 8.14 -2.39 -0.02 0.54 16 37 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.11 3.07 7.91 -2.39 -0.02 3.06 16 Total: -1.00 -77.36 319.86 -0.75 -78.12 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.99 Total: 8.69 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 3.92 Total: -21.87 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -7.49 Total: -104.12 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.05 Total: -7.17 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -77.36 -0.75 -78.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234455069.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.475 kcal (2) G-P(sol) polarization free energy of solvation -77.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds