Wall clock time and date at job start Tue Mar 31 2020 00:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00503 * 2 1 4 4 H 1.48500 * 109.46845 * 85.02016 * 3 2 1 5 5 H 1.48500 * 109.46905 * 325.02108 * 3 2 1 6 6 H 1.48502 * 109.47029 * 205.02197 * 3 2 1 7 7 C 1.38812 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00366 * 187.37420 * 7 2 1 9 9 N 1.36942 * 119.99928 * 7.38075 * 7 2 1 10 10 C 1.47026 * 125.64594 * 6.33469 * 9 7 2 11 11 C 1.54336 * 107.26214 * 178.85090 * 10 9 7 12 12 C 1.55152 * 103.02136 * 338.14337 * 11 10 9 13 13 H 1.08995 * 111.00267 * 277.22947 * 12 11 10 14 14 O 1.42905 * 111.03590 * 153.39346 * 12 11 10 15 15 C 1.35704 * 116.99835 * 156.32903 * 14 12 11 16 16 N 1.31131 * 127.09847 * 359.68464 * 15 14 12 17 17 O 1.21440 * 111.58572 * 179.80126 * 16 15 14 18 18 C 1.33240 * 111.43601 * 0.43579 * 17 16 15 19 19 C 1.35335 * 106.56513 * 359.78753 * 18 17 16 20 20 C 1.50073 * 124.91856 * 179.82087 * 19 18 17 21 21 C 1.53542 * 108.23358 * 343.87440 * 20 19 18 22 22 C 1.53112 * 109.52109 * 49.20698 * 21 20 19 23 23 C 1.50581 * 129.64472 * 179.82059 * 18 17 16 24 24 C 1.47419 * 125.64839 * 186.65061 * 9 7 2 25 25 H 0.96999 * 119.99355 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.88022 * 298.40008 * 10 9 7 27 27 H 1.08996 * 109.87722 * 59.56577 * 10 9 7 28 28 H 1.09000 * 110.84605 * 219.67155 * 11 10 9 29 29 H 1.09004 * 110.51446 * 96.45669 * 11 10 9 30 30 H 1.09001 * 109.71157 * 103.55304 * 20 19 18 31 31 H 1.08997 * 109.71322 * 224.14148 * 20 19 18 32 32 H 1.08998 * 109.46489 * 169.22495 * 21 20 19 33 33 H 1.09002 * 109.46097 * 289.19265 * 21 20 19 34 34 H 1.09001 * 109.42414 * 50.24912 * 22 21 20 35 35 H 1.08991 * 109.43009 * 170.09009 * 22 21 20 36 36 H 1.09003 * 109.69643 * 43.54967 * 23 18 17 37 37 H 1.08999 * 109.72988 * 282.98212 * 23 18 17 38 38 H 1.09002 * 110.36544 * 322.92392 * 24 9 7 39 39 H 1.08992 * 110.37197 * 85.13948 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.3926 2.1071 1.3948 5 1 1.5044 2.6200 -0.8026 6 1 3.5965 1.4119 -0.5922 7 6 2.0102 -1.2022 -0.0005 8 1 3.0834 -1.2062 0.1195 9 7 1.3340 -2.3831 -0.1534 10 6 -0.0986 -2.5172 -0.4558 11 6 -0.4046 -4.0261 -0.5640 12 6 0.9859 -4.6438 -0.8676 13 1 1.2193 -4.5774 -1.9302 14 8 1.0560 -5.9972 -0.4143 15 6 1.9665 -6.8026 -1.0174 16 7 2.7933 -6.4781 -1.9821 17 8 3.4892 -7.4181 -2.3092 18 6 3.2021 -8.5074 -1.5976 19 6 2.2139 -8.1592 -0.7410 20 6 1.5745 -9.0830 0.2540 21 6 1.9241 -10.5262 -0.1366 22 6 3.4312 -10.6390 -0.3821 23 6 3.8045 -9.8857 -1.6656 24 6 1.9204 -3.7305 -0.0356 25 1 -0.4849 0.8401 0.0004 26 1 -0.6897 -2.0735 0.3454 27 1 -0.3252 -2.0261 -1.4021 28 1 -1.1006 -4.2232 -1.3794 29 1 -0.7972 -4.4049 0.3797 30 1 1.9568 -8.8696 1.2523 31 1 0.4930 -8.9489 0.2381 32 1 1.6360 -11.2007 0.6697 33 1 1.3868 -10.7967 -1.0456 34 1 3.9693 -10.2067 0.4615 35 1 3.7042 -11.6891 -0.4855 36 1 4.8890 -9.8092 -1.7444 37 1 3.4100 -10.4174 -2.5315 38 1 2.9290 -3.7427 -0.4488 39 1 1.9345 -4.0483 1.0069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234457511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:50 Heat of formation + Delta-G solvation = 44.132064 kcal Electronic energy + Delta-G solvation = -21720.348688 eV Core-core repulsion = 18439.218145 eV Total energy + Delta-G solvation = -3281.130543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.79044 -38.99502 -37.80637 -36.38838 -32.97896 -32.05734 -30.99250 -30.25668 -29.27207 -27.36728 -24.73223 -24.46398 -22.97411 -22.25133 -20.69201 -20.17256 -19.29084 -17.93188 -17.61361 -16.97921 -16.32553 -15.24474 -14.79229 -14.70588 -14.31064 -14.21827 -14.06594 -13.77595 -13.56741 -13.27282 -12.84833 -12.57346 -12.40470 -12.08468 -11.73246 -11.29571 -11.19467 -11.07494 -10.97784 -10.82600 -10.73838 -10.46344 -10.34557 -10.10981 -9.88243 -9.70485 -9.09596 -8.83994 -8.63427 -6.86930 -5.72925 -3.09308 1.47704 2.43145 2.94229 3.17766 3.40429 3.45643 3.48476 4.28375 4.46392 4.49540 4.54193 4.61551 4.88457 4.98935 5.14911 5.17932 5.25078 5.26379 5.37381 5.47567 5.54300 5.57870 5.64685 5.65310 5.70931 5.76100 5.85138 5.98299 6.05865 6.18451 6.36535 6.41316 6.58925 6.66140 7.41349 7.48286 7.60598 7.77321 8.22031 8.41195 9.17676 9.77946 10.42854 11.37709 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037512 B = 0.003657 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.245581 B = 7653.916058 C = 8033.733426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.175 3.825 11 C -0.135 4.135 12 C 0.069 3.931 13 H 0.085 0.915 14 O -0.274 6.274 15 C 0.230 3.770 16 N -0.409 5.409 17 O 0.102 5.898 18 C -0.021 4.021 19 C -0.211 4.211 20 C -0.039 4.039 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.035 4.035 24 C 0.123 3.877 25 H 0.253 0.747 26 H 0.068 0.932 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 -23.265 -1.775 23.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.050 3.950 11 C -0.173 4.173 12 C 0.012 3.988 13 H 0.103 0.897 14 O -0.179 6.179 15 C 0.033 3.967 16 N -0.138 5.138 17 O 0.044 5.956 18 C -0.086 4.086 19 C -0.215 4.215 20 C -0.077 4.077 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.073 4.073 24 C -0.004 4.004 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.062 0.938 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.878 -21.949 -2.223 22.399 hybrid contribution 0.151 0.686 0.361 0.790 sum 4.029 -21.263 -1.861 21.721 Atomic orbital electron populations 1.69938 1.04964 1.25184 1.56699 1.24827 0.95723 0.97788 1.02018 0.86064 0.78714 0.83266 0.77522 1.21541 1.21543 1.20553 1.19068 0.90985 0.82356 1.43390 0.90344 1.44331 1.05472 0.99554 1.83424 1.21257 0.85716 0.87330 1.00693 1.23052 0.93757 0.98903 1.01603 1.23909 0.99258 0.76501 0.99092 0.89691 1.86218 1.50770 1.23146 1.57757 1.21485 0.92204 0.90450 0.92604 1.74618 1.10418 1.09784 1.18952 1.84727 1.47439 1.13909 1.49502 1.23921 0.97782 0.92421 0.94504 1.20021 1.03357 0.92688 1.05412 1.19871 1.00342 0.91415 0.96069 1.21680 0.95861 0.96148 1.02189 1.21638 0.96808 1.00318 0.96814 1.20220 1.01150 0.85898 1.00033 1.21836 0.95342 0.86536 0.96636 0.93650 0.91418 0.94588 0.91345 0.90959 0.90331 0.90153 0.90820 0.91418 0.91004 0.90261 0.88959 0.88868 0.93816 0.95487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.50 10.48 55.49 0.58 -26.92 16 2 C -0.01 -0.21 5.45 -17.43 -0.09 -0.30 16 3 Si 0.91 22.58 29.56 -169.99 -5.02 17.56 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.69 10.26 -15.06 -0.15 -6.85 16 8 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 9 N -0.60 -16.30 3.39 -170.07 -0.58 -16.87 16 10 C 0.17 4.40 5.43 -3.06 -0.02 4.39 16 11 C -0.13 -2.73 6.68 -24.89 -0.17 -2.89 16 12 C 0.07 1.42 3.39 -24.58 -0.08 1.34 16 13 H 0.09 1.80 7.51 -51.93 -0.39 1.41 16 14 O -0.27 -5.20 10.02 -18.82 -0.19 -5.38 16 15 C 0.23 4.01 7.97 -16.94 -0.14 3.88 16 16 N -0.41 -7.36 11.22 30.41 0.34 -7.02 16 17 O 0.10 1.54 11.19 19.06 0.21 1.75 16 18 C -0.02 -0.25 7.38 -35.40 -0.26 -0.52 16 19 C -0.21 -2.86 6.09 -105.05 -0.64 -3.50 16 20 C -0.04 -0.40 6.30 -27.90 -0.18 -0.58 16 21 C -0.12 -0.84 5.92 -26.39 -0.16 -1.00 16 22 C -0.12 -0.70 5.88 -26.45 -0.16 -0.86 16 23 C -0.04 -0.25 6.31 -27.72 -0.17 -0.42 16 24 C 0.12 2.89 6.97 -2.53 -0.02 2.87 16 25 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.07 1.86 6.99 -51.93 -0.36 1.50 16 27 H 0.04 0.97 7.91 -51.93 -0.41 0.56 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 317.44 15.07 4.78 4.78 Total: -1.00 -32.72 317.44 -7.88 -40.61 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -5.78 Total: -4.07 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.23 Total: -4.44 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.35 Total: -50.81 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: 0.02 Total: -3.64 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.72 -7.88 -40.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234457511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.739 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds