Wall clock time and date at job start Tue Mar 31 2020 00:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00503 * 2 1 4 4 H 1.48500 * 109.46845 * 85.02016 * 3 2 1 5 5 H 1.48500 * 109.46905 * 325.02108 * 3 2 1 6 6 H 1.48502 * 109.47029 * 205.02197 * 3 2 1 7 7 C 1.38812 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00366 * 187.37420 * 7 2 1 9 9 N 1.36942 * 119.99928 * 7.38075 * 7 2 1 10 10 C 1.47026 * 125.64594 * 6.33469 * 9 7 2 11 11 C 1.54336 * 107.26214 * 178.85090 * 10 9 7 12 12 C 1.55152 * 103.02136 * 338.14337 * 11 10 9 13 13 H 1.08995 * 111.00267 * 277.22947 * 12 11 10 14 14 O 1.42905 * 111.03590 * 153.39346 * 12 11 10 15 15 C 1.35704 * 116.99835 * 156.32903 * 14 12 11 16 16 N 1.31131 * 127.09847 * 359.68464 * 15 14 12 17 17 O 1.21440 * 111.58572 * 179.80126 * 16 15 14 18 18 C 1.33240 * 111.43601 * 0.43579 * 17 16 15 19 19 C 1.35335 * 106.56513 * 359.78753 * 18 17 16 20 20 C 1.50073 * 124.91856 * 179.82087 * 19 18 17 21 21 C 1.53542 * 108.23358 * 343.87440 * 20 19 18 22 22 C 1.53112 * 109.52109 * 49.20698 * 21 20 19 23 23 C 1.50581 * 129.64472 * 179.82059 * 18 17 16 24 24 C 1.47419 * 125.64839 * 186.65061 * 9 7 2 25 25 H 0.96999 * 119.99355 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.88022 * 298.40008 * 10 9 7 27 27 H 1.08996 * 109.87722 * 59.56577 * 10 9 7 28 28 H 1.09000 * 110.84605 * 219.67155 * 11 10 9 29 29 H 1.09004 * 110.51446 * 96.45669 * 11 10 9 30 30 H 1.09001 * 109.71157 * 103.55304 * 20 19 18 31 31 H 1.08997 * 109.71322 * 224.14148 * 20 19 18 32 32 H 1.08998 * 109.46489 * 169.22495 * 21 20 19 33 33 H 1.09002 * 109.46097 * 289.19265 * 21 20 19 34 34 H 1.09001 * 109.42414 * 50.24912 * 22 21 20 35 35 H 1.08991 * 109.43009 * 170.09009 * 22 21 20 36 36 H 1.09003 * 109.69643 * 43.54967 * 23 18 17 37 37 H 1.08999 * 109.72988 * 282.98212 * 23 18 17 38 38 H 1.09002 * 110.36544 * 322.92392 * 24 9 7 39 39 H 1.08992 * 110.37197 * 85.13948 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.3926 2.1071 1.3948 5 1 1.5044 2.6200 -0.8026 6 1 3.5965 1.4119 -0.5922 7 6 2.0102 -1.2022 -0.0005 8 1 3.0834 -1.2062 0.1195 9 7 1.3340 -2.3831 -0.1534 10 6 -0.0986 -2.5172 -0.4558 11 6 -0.4046 -4.0261 -0.5640 12 6 0.9859 -4.6438 -0.8676 13 1 1.2193 -4.5774 -1.9302 14 8 1.0560 -5.9972 -0.4143 15 6 1.9665 -6.8026 -1.0174 16 7 2.7933 -6.4781 -1.9821 17 8 3.4892 -7.4181 -2.3092 18 6 3.2021 -8.5074 -1.5976 19 6 2.2139 -8.1592 -0.7410 20 6 1.5745 -9.0830 0.2540 21 6 1.9241 -10.5262 -0.1366 22 6 3.4312 -10.6390 -0.3821 23 6 3.8045 -9.8857 -1.6656 24 6 1.9204 -3.7305 -0.0356 25 1 -0.4849 0.8401 0.0004 26 1 -0.6897 -2.0735 0.3454 27 1 -0.3252 -2.0261 -1.4021 28 1 -1.1006 -4.2232 -1.3794 29 1 -0.7972 -4.4049 0.3797 30 1 1.9568 -8.8696 1.2523 31 1 0.4930 -8.9489 0.2381 32 1 1.6360 -11.2007 0.6697 33 1 1.3868 -10.7967 -1.0456 34 1 3.9693 -10.2067 0.4615 35 1 3.7042 -11.6891 -0.4855 36 1 4.8890 -9.8092 -1.7444 37 1 3.4100 -10.4174 -2.5315 38 1 2.9290 -3.7427 -0.4488 39 1 1.9345 -4.0483 1.0069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234457511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:49 Heat of formation + Delta-G solvation = 22.862416 kcal Electronic energy + Delta-G solvation = -21721.271009 eV Core-core repulsion = 18439.218145 eV Total energy + Delta-G solvation = -3282.052864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.98296 -40.58051 -38.59349 -38.13422 -34.59743 -33.67489 -31.88106 -31.27219 -31.09638 -29.25136 -26.69436 -25.38134 -23.91613 -23.56328 -22.17437 -21.98501 -20.46026 -19.16128 -18.94107 -18.81541 -17.64928 -16.82003 -16.49410 -15.93228 -15.86434 -15.61508 -14.99499 -14.74198 -14.69110 -14.32356 -14.25744 -14.04627 -14.00883 -13.54234 -13.19448 -13.04756 -12.77564 -12.38892 -12.20598 -12.10719 -12.09464 -11.83457 -11.78452 -11.69214 -11.61114 -11.46858 -10.82255 -10.21457 -10.06351 -9.05026 -7.93960 -5.34771 0.44523 1.20421 1.42171 1.44802 1.54198 1.62093 2.18137 2.43629 3.12663 3.22984 3.45071 3.61188 3.68938 3.76888 3.81774 3.90036 4.02725 4.12786 4.28873 4.33066 4.43232 4.51387 4.56169 4.61963 4.66799 4.79461 4.84562 4.93979 4.97120 5.05323 5.21869 5.22842 5.29662 5.37365 5.47822 5.48510 5.59503 5.98719 6.09587 6.97432 7.26311 7.61008 8.25671 9.15211 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037512 B = 0.003657 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.245581 B = 7653.916058 C = 8033.733426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.985 3.015 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.256 4.256 8 H 0.079 0.921 9 N -0.621 5.621 10 C 0.182 3.818 11 C -0.119 4.119 12 C 0.089 3.911 13 H 0.076 0.924 14 O -0.276 6.276 15 C 0.197 3.803 16 N -0.444 5.444 17 O 0.098 5.902 18 C -0.005 4.005 19 C -0.222 4.222 20 C -0.042 4.042 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.036 4.036 24 C 0.125 3.875 25 H 0.252 0.748 26 H 0.040 0.960 27 H 0.010 0.990 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.035 0.965 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.880 -25.818 -1.911 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.252 4.252 3 Si 0.812 3.188 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.385 4.385 8 H 0.096 0.904 9 N -0.349 5.349 10 C 0.057 3.943 11 C -0.157 4.157 12 C 0.031 3.969 13 H 0.095 0.905 14 O -0.182 6.182 15 C 0.001 3.999 16 N -0.173 5.173 17 O 0.040 5.960 18 C -0.070 4.070 19 C -0.227 4.227 20 C -0.080 4.080 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.073 4.073 24 C -0.001 4.001 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.028 0.972 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.053 0.947 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.855 -24.538 -2.359 25.124 hybrid contribution -0.080 1.367 0.400 1.427 sum 4.774 -23.170 -1.959 23.738 Atomic orbital electron populations 1.70138 1.06331 1.25836 1.57059 1.25734 0.96726 1.01170 1.01617 0.84980 0.77667 0.78518 0.77621 1.20808 1.21369 1.19548 1.19422 0.91414 0.83664 1.43968 0.90358 1.44611 1.06420 1.00417 1.83445 1.21036 0.84640 0.90474 0.98149 1.22884 0.94181 0.95111 1.03495 1.23457 0.98256 0.77331 0.97843 0.90544 1.86173 1.51700 1.22087 1.58199 1.21996 0.92623 0.91801 0.93527 1.74591 1.11308 1.11546 1.19807 1.84664 1.46948 1.14543 1.49857 1.24916 0.96553 0.93138 0.92346 1.20493 1.04113 0.91384 1.06676 1.20032 0.99721 0.93038 0.95215 1.21697 0.96792 0.93788 1.03121 1.21695 0.95823 1.01936 0.95839 1.20622 1.02205 0.82729 1.01757 1.21858 0.95549 0.85814 0.96908 0.93874 0.94207 0.97182 0.88529 0.89590 0.90387 0.90780 0.88821 0.90961 0.91538 0.87010 0.86957 0.86400 0.94679 0.95716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.93 10.48 21.65 0.23 -57.70 16 2 C -0.06 -3.46 5.45 84.86 0.46 -3.00 16 3 Si 0.99 46.99 29.56 68.60 2.03 49.01 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.26 -15.31 10.26 84.03 0.86 -14.45 16 8 H 0.08 4.53 7.84 -2.91 -0.02 4.51 16 9 N -0.62 -34.83 3.39 -691.98 -2.35 -37.18 16 10 C 0.18 9.48 5.43 86.73 0.47 9.95 16 11 C -0.12 -4.81 6.68 31.79 0.21 -4.59 16 12 C 0.09 3.70 3.39 31.99 0.11 3.81 16 13 H 0.08 3.33 7.51 -2.39 -0.02 3.31 16 14 O -0.28 -10.55 10.02 -90.25 -0.90 -11.46 16 15 C 0.20 6.91 7.97 85.38 0.68 7.59 16 16 N -0.44 -16.20 11.22 -171.57 -1.93 -18.12 16 17 O 0.10 2.90 11.19 78.24 0.88 3.77 16 18 C 0.00 -0.10 7.38 24.98 0.18 0.08 16 19 C -0.22 -5.82 6.09 -20.14 -0.12 -5.95 16 20 C -0.04 -0.80 6.30 29.83 0.19 -0.61 16 21 C -0.12 -1.22 5.92 30.81 0.18 -1.03 16 22 C -0.12 -0.89 5.88 30.78 0.18 -0.71 16 23 C -0.04 -0.36 6.31 29.95 0.19 -0.17 16 24 C 0.13 6.02 6.97 86.86 0.61 6.63 16 25 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 26 H 0.04 2.28 6.99 -2.39 -0.02 2.26 16 27 H 0.01 0.56 7.91 -2.39 -0.02 0.54 16 28 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 29 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 34 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 35 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -73.56 317.44 3.20 -70.37 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 1.04 Total: 3.76 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 4.20 Total: -2.46 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -4.05 Total: -113.00 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.03 Total: -7.68 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -73.56 3.20 -70.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234457511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.228 kcal (2) G-P(sol) polarization free energy of solvation -73.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds