Wall clock time and date at job start Mon Mar 30 2020 23:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45200 * 109.46773 * 2 1 4 4 C 1.34229 * 116.99764 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00092 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00114 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47210 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47235 * 180.02562 * 7 6 4 9 9 C 1.50699 * 109.47068 * 180.02562 * 8 7 6 10 10 C 1.38305 * 119.93408 * 89.99733 * 9 8 7 11 11 C 1.38101 * 120.07071 * 179.97438 * 10 9 8 12 12 C 1.38876 * 119.92956 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06861 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53840 * 13 12 11 15 15 H 1.08003 * 120.00029 * 354.94359 * 14 13 12 16 16 C 1.38659 * 120.00122 * 174.94542 * 14 13 12 17 17 N 1.31558 * 119.99705 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00035 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47181 * 89.99980 * 18 16 14 20 20 H 1.48498 * 109.47260 * 210.00361 * 18 16 14 21 21 H 1.48502 * 109.47130 * 330.00179 * 18 16 14 22 22 C 1.38880 * 119.86555 * 0.27954 * 12 11 10 23 23 C 1.38108 * 119.92520 * 359.40189 * 22 12 11 24 24 H 1.08996 * 109.47178 * 59.99574 * 1 2 3 25 25 H 1.08999 * 109.47017 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46847 * 299.99732 * 1 2 3 27 27 H 1.08998 * 109.46847 * 240.00267 * 2 1 3 28 28 H 1.08992 * 109.47273 * 119.99919 * 2 1 3 29 29 H 1.08998 * 109.46621 * 59.99924 * 6 4 3 30 30 H 1.08994 * 109.47099 * 300.00112 * 6 4 3 31 31 H 1.09003 * 109.47162 * 60.00021 * 7 6 4 32 32 H 1.09004 * 109.47410 * 299.99937 * 7 6 4 33 33 H 1.08986 * 109.47211 * 59.99709 * 8 7 6 34 34 H 1.09005 * 109.46796 * 299.99595 * 8 7 6 35 35 H 1.07999 * 119.96326 * 0.02562 * 10 9 8 36 36 H 1.07997 * 120.03156 * 180.02562 * 11 10 9 37 37 H 0.96997 * 119.99350 * 179.97438 * 17 16 14 38 38 H 1.07996 * 120.04097 * 179.72435 * 22 12 11 39 39 H 1.08003 * 119.96536 * 180.32007 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8575 -0.0010 8 6 6.0334 4.2713 -0.0010 9 6 7.5383 4.1924 -0.0015 10 6 8.2271 4.1564 -1.2003 11 6 9.6062 4.0846 -1.2041 12 6 10.3015 4.0481 -0.0024 13 8 11.6571 3.9781 -0.0029 14 6 12.2741 4.0629 -1.1987 15 1 11.6899 4.0988 -2.1064 16 6 13.6586 4.1041 -1.2632 17 7 14.2605 4.1875 -2.4300 18 14 14.6690 4.0428 0.3067 19 1 14.9746 2.6292 0.6437 20 1 15.9370 4.7898 0.1088 21 1 13.8984 4.6605 1.4157 22 6 9.6067 4.0780 1.1997 23 6 8.2278 4.1564 1.1968 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.5850 3.4698 0.8888 30 1 3.5845 3.4694 -0.8911 31 1 5.7846 2.3249 -0.8908 32 1 5.7845 2.3257 0.8892 33 1 5.6974 4.8034 0.8888 34 1 5.6975 4.8034 -0.8911 35 1 7.6859 4.1853 -2.1345 36 1 10.1435 4.0570 -2.1406 37 1 15.2290 4.2167 -2.4751 38 1 10.1442 4.0452 2.1358 39 1 7.6871 4.1849 2.1313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249975436.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:51 Heat of formation + Delta-G solvation = -110.805533 kcal Electronic energy + Delta-G solvation = -20158.376961 eV Core-core repulsion = 16838.235069 eV Total energy + Delta-G solvation = -3320.141892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66102 -39.20921 -37.28987 -36.80016 -34.45283 -32.39328 -32.09046 -30.36105 -30.16166 -26.88021 -25.10970 -23.69073 -22.37833 -22.04292 -20.72698 -20.21293 -17.90561 -17.82541 -17.24460 -17.03187 -16.43844 -15.42854 -14.81499 -14.73180 -14.18686 -13.84795 -13.79145 -13.70731 -13.44086 -13.31612 -12.79104 -12.62190 -12.56115 -12.23020 -12.18613 -11.98659 -11.80958 -11.68257 -11.12940 -10.87444 -10.79422 -10.77739 -10.66694 -10.52902 -10.47791 -10.12675 -9.36770 -8.84715 -8.24520 -7.27653 -6.40411 -4.06908 2.04224 2.14334 2.19621 2.47126 3.23610 3.26329 3.41055 4.24783 4.41280 4.49414 4.56409 4.63403 4.76907 4.84729 4.88198 4.91300 5.11883 5.20917 5.32179 5.34718 5.39486 5.53354 5.58451 5.65368 5.68065 5.79087 5.87012 6.05825 6.15120 6.21101 6.37406 6.40435 6.60268 6.81622 7.06826 7.26563 7.33153 7.57629 7.63360 7.81575 8.05388 8.94947 9.57833 10.67294 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040335 B = 0.002546 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.024171 B =10996.662204 C =11078.596495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.458 3.542 5 O -0.504 6.504 6 C -0.113 4.113 7 C -0.105 4.105 8 C -0.061 4.061 9 C -0.175 4.175 10 C -0.069 4.069 11 C -0.220 4.220 12 C 0.157 3.843 13 O -0.219 6.219 14 C -0.389 4.389 15 H 0.106 0.894 16 C 0.062 3.938 17 N -0.880 5.880 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.191 4.191 23 C -0.073 4.073 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.132 0.868 37 H 0.279 0.721 38 H 0.116 0.884 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.324 -2.955 5.323 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.281 6.281 4 C 0.301 3.699 5 O -0.391 6.391 6 C -0.151 4.151 7 C -0.143 4.143 8 C -0.098 4.098 9 C -0.175 4.175 10 C -0.087 4.087 11 C -0.239 4.239 12 C 0.105 3.895 13 O -0.124 6.124 14 C -0.465 4.465 15 H 0.124 0.876 16 C -0.141 4.141 17 N -0.518 5.518 18 Si 0.732 3.268 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.211 4.211 23 C -0.091 4.091 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.150 0.850 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -23.735 -3.290 5.380 24.558 hybrid contribution 0.596 -0.272 0.347 0.741 sum -23.139 -3.562 5.726 24.102 Atomic orbital electron populations 1.21806 0.92659 1.02964 1.03495 1.23013 0.95321 0.80393 1.02659 1.86511 1.25007 1.32313 1.84248 1.23997 0.80304 0.93297 0.72273 1.90701 1.60315 1.43323 1.44811 1.21527 0.97512 0.90300 1.05721 1.21513 0.90399 0.98135 1.04226 1.20320 0.92231 0.95334 1.01946 1.19268 0.94167 1.10811 0.93299 1.20667 0.93542 0.97871 0.96658 1.21277 0.94283 1.09632 0.98681 1.19140 0.83749 0.93154 0.93414 1.83569 1.14723 1.80291 1.33803 1.20770 0.90919 1.51898 0.82865 0.87648 1.24474 0.95766 0.95700 0.98143 1.69649 1.10552 1.47983 1.23640 0.86170 0.78947 0.78824 0.82896 1.19897 1.20833 1.18375 1.20207 0.93692 1.11190 0.95974 1.20502 0.92924 0.98910 0.96760 0.91469 0.90269 0.91495 0.91235 0.91260 0.87722 0.87685 0.90881 0.90933 0.91697 0.91672 0.87318 0.84999 0.91080 0.86609 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.29 37.16 0.38 -0.43 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.36 -3.62 10.22 -39.26 -0.40 -4.02 16 4 C 0.46 5.13 7.96 36.01 0.29 5.42 16 5 O -0.50 -7.40 15.73 -18.75 -0.29 -7.70 16 6 C -0.11 -0.98 5.81 -27.88 -0.16 -1.14 16 7 C -0.11 -1.20 4.49 -26.73 -0.12 -1.32 16 8 C -0.06 -0.71 5.34 -27.88 -0.15 -0.86 16 9 C -0.17 -2.81 5.14 -104.57 -0.54 -3.35 16 10 C -0.07 -1.24 9.69 -39.61 -0.38 -1.63 16 11 C -0.22 -4.78 9.17 -39.40 -0.36 -5.14 16 12 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 13 O -0.22 -5.85 8.59 0.05 0.00 -5.85 16 14 C -0.39 -11.08 9.95 30.89 0.31 -10.77 16 15 H 0.11 3.06 5.44 -52.48 -0.29 2.78 16 16 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 17 N -0.88 -25.62 13.96 55.48 0.77 -24.85 16 18 Si 0.91 21.90 28.62 -169.99 -4.86 17.04 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.19 -3.83 9.99 -39.39 -0.39 -4.22 16 23 C -0.07 -1.22 9.69 -39.61 -0.38 -1.61 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 32 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.06 0.65 8.08 -51.94 -0.42 0.23 16 34 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.13 3.02 5.64 -52.49 -0.30 2.72 16 37 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 39 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 337.19 15.07 5.08 5.08 Total: -1.00 -31.85 337.19 -6.97 -38.82 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.62 Total: 0.71 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -1.64 Total: -19.23 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.77 Total: -24.85 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.70 Total: -17.56 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.85 -6.97 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249975436.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.988 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds