Wall clock time and date at job start Mon Mar 30 2020 23:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45200 * 109.46773 * 2 1 4 4 C 1.34229 * 116.99764 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00092 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00114 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47210 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47235 * 180.02562 * 7 6 4 9 9 C 1.50699 * 109.47068 * 180.02562 * 8 7 6 10 10 C 1.38305 * 119.93408 * 89.99733 * 9 8 7 11 11 C 1.38101 * 120.07071 * 179.97438 * 10 9 8 12 12 C 1.38876 * 119.92956 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06861 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53840 * 13 12 11 15 15 H 1.08003 * 120.00029 * 354.94359 * 14 13 12 16 16 C 1.38659 * 120.00122 * 174.94542 * 14 13 12 17 17 N 1.31558 * 119.99705 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00035 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47181 * 89.99980 * 18 16 14 20 20 H 1.48498 * 109.47260 * 210.00361 * 18 16 14 21 21 H 1.48502 * 109.47130 * 330.00179 * 18 16 14 22 22 C 1.38880 * 119.86555 * 0.27954 * 12 11 10 23 23 C 1.38108 * 119.92520 * 359.40189 * 22 12 11 24 24 H 1.08996 * 109.47178 * 59.99574 * 1 2 3 25 25 H 1.08999 * 109.47017 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46847 * 299.99732 * 1 2 3 27 27 H 1.08998 * 109.46847 * 240.00267 * 2 1 3 28 28 H 1.08992 * 109.47273 * 119.99919 * 2 1 3 29 29 H 1.08998 * 109.46621 * 59.99924 * 6 4 3 30 30 H 1.08994 * 109.47099 * 300.00112 * 6 4 3 31 31 H 1.09003 * 109.47162 * 60.00021 * 7 6 4 32 32 H 1.09004 * 109.47410 * 299.99937 * 7 6 4 33 33 H 1.08986 * 109.47211 * 59.99709 * 8 7 6 34 34 H 1.09005 * 109.46796 * 299.99595 * 8 7 6 35 35 H 1.07999 * 119.96326 * 0.02562 * 10 9 8 36 36 H 1.07997 * 120.03156 * 180.02562 * 11 10 9 37 37 H 0.96997 * 119.99350 * 179.97438 * 17 16 14 38 38 H 1.07996 * 120.04097 * 179.72435 * 22 12 11 39 39 H 1.08003 * 119.96536 * 180.32007 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8575 -0.0010 8 6 6.0334 4.2713 -0.0010 9 6 7.5383 4.1924 -0.0015 10 6 8.2271 4.1564 -1.2003 11 6 9.6062 4.0846 -1.2041 12 6 10.3015 4.0481 -0.0024 13 8 11.6571 3.9781 -0.0029 14 6 12.2741 4.0629 -1.1987 15 1 11.6899 4.0988 -2.1064 16 6 13.6586 4.1041 -1.2632 17 7 14.2605 4.1875 -2.4300 18 14 14.6690 4.0428 0.3067 19 1 14.9746 2.6292 0.6437 20 1 15.9370 4.7898 0.1088 21 1 13.8984 4.6605 1.4157 22 6 9.6067 4.0780 1.1997 23 6 8.2278 4.1564 1.1968 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.5850 3.4698 0.8888 30 1 3.5845 3.4694 -0.8911 31 1 5.7846 2.3249 -0.8908 32 1 5.7845 2.3257 0.8892 33 1 5.6974 4.8034 0.8888 34 1 5.6975 4.8034 -0.8911 35 1 7.6859 4.1853 -2.1345 36 1 10.1435 4.0570 -2.1406 37 1 15.2290 4.2167 -2.4751 38 1 10.1442 4.0452 2.1358 39 1 7.6871 4.1849 2.1313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249975436.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:50 Heat of formation + Delta-G solvation = -128.721039 kcal Electronic energy + Delta-G solvation = -20159.153836 eV Core-core repulsion = 16838.235069 eV Total energy + Delta-G solvation = -3320.918767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50303 -40.87835 -38.73812 -37.78782 -35.55324 -34.41917 -32.73504 -31.81512 -31.45708 -28.24038 -26.85968 -24.51959 -23.67871 -23.26029 -21.78304 -21.38253 -19.80817 -19.10727 -18.65789 -17.81351 -17.31158 -16.71918 -16.30447 -15.94004 -15.73079 -15.55713 -15.22486 -14.81929 -14.42400 -14.27881 -14.13254 -14.10208 -13.96193 -13.52567 -13.00252 -12.98723 -12.76011 -12.71175 -12.48375 -12.41281 -12.15339 -12.04909 -11.83606 -11.61486 -11.48947 -11.46268 -11.22427 -10.89378 -9.78585 -8.93954 -8.50675 -6.23029 0.58354 0.66445 1.21210 1.30074 1.34894 1.50630 1.74302 2.27319 2.76226 3.05661 3.18341 3.72849 3.88815 3.99262 4.03491 4.09093 4.16396 4.21670 4.34155 4.38316 4.57544 4.59487 4.63903 4.76260 4.81350 4.89904 4.92724 4.94636 5.06078 5.16554 5.17473 5.32246 5.41592 5.45279 5.53662 5.61616 5.77850 5.86708 5.93166 6.28652 6.76124 6.83657 7.59197 8.61070 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040335 B = 0.002546 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.024171 B =10996.662204 C =11078.596495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.362 6.362 4 C 0.457 3.543 5 O -0.549 6.549 6 C -0.104 4.104 7 C -0.101 4.101 8 C -0.057 4.057 9 C -0.149 4.149 10 C -0.075 4.075 11 C -0.239 4.239 12 C 0.112 3.888 13 O -0.248 6.248 14 C -0.399 4.399 15 H 0.079 0.921 16 C 0.007 3.993 17 N -0.924 5.924 18 Si 0.973 3.027 19 H -0.267 1.267 20 H -0.266 1.266 21 H -0.263 1.263 22 C -0.193 4.193 23 C -0.068 4.068 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.285 0.715 38 H 0.126 0.874 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.819 -2.181 7.401 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.279 6.279 4 C 0.302 3.698 5 O -0.440 6.440 6 C -0.141 4.141 7 C -0.139 4.139 8 C -0.094 4.094 9 C -0.150 4.150 10 C -0.093 4.093 11 C -0.258 4.258 12 C 0.063 3.937 13 O -0.156 6.156 14 C -0.475 4.475 15 H 0.097 0.903 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.795 3.205 19 H -0.192 1.192 20 H -0.191 1.191 21 H -0.187 1.187 22 C -0.213 4.213 23 C -0.085 4.085 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.154 0.846 30 H 0.150 0.850 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.153 0.847 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.144 0.856 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -27.298 -2.507 7.462 28.411 hybrid contribution 1.261 -0.539 -0.284 1.400 sum -26.038 -3.046 7.177 27.180 Atomic orbital electron populations 1.21814 0.90313 1.04266 1.03844 1.23241 0.97175 0.79626 1.02205 1.86516 1.24371 1.33270 1.83746 1.24574 0.80385 0.93900 0.70907 1.90693 1.61253 1.44947 1.47066 1.21546 0.95081 0.89036 1.08473 1.21369 0.92657 0.97358 1.02502 1.20420 0.88199 0.95979 1.04764 1.19919 0.97095 1.05889 0.92059 1.21016 0.91959 0.97186 0.99092 1.21303 0.96171 1.11032 0.97328 1.19721 0.82970 0.95632 0.95383 1.83506 1.16493 1.83197 1.32387 1.20706 0.91390 1.52317 0.83121 0.90321 1.25311 0.96718 0.95586 1.01468 1.69735 1.11118 1.50138 1.25514 0.85187 0.77599 0.79160 0.78568 1.19172 1.19085 1.18717 1.20566 0.95252 1.10359 0.95076 1.21052 0.91647 0.96796 0.99037 0.91150 0.88539 0.91036 0.91869 0.91687 0.84577 0.85041 0.93190 0.92386 0.88429 0.89433 0.84669 0.87750 0.90590 0.85572 0.82536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 71.98 0.74 -0.48 16 2 C 0.05 0.76 6.19 71.98 0.45 1.20 16 3 O -0.36 -6.37 10.22 -51.41 -0.53 -6.90 16 4 C 0.46 9.19 7.96 71.24 0.57 9.75 16 5 O -0.55 -15.67 15.73 21.95 0.35 -15.32 16 6 C -0.10 -1.33 5.81 29.85 0.17 -1.16 16 7 C -0.10 -1.92 4.49 30.59 0.14 -1.79 16 8 C -0.06 -1.01 5.34 29.85 0.16 -0.85 16 9 C -0.15 -4.26 5.14 -19.83 -0.10 -4.36 16 10 C -0.07 -2.59 9.69 22.25 0.22 -2.37 16 11 C -0.24 -10.84 9.17 22.39 0.21 -10.63 16 12 C 0.11 5.39 6.65 22.58 0.15 5.54 16 13 O -0.25 -13.92 8.59 -22.72 -0.20 -14.11 16 14 C -0.40 -24.21 9.95 67.92 0.68 -23.53 16 15 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 16 C 0.01 0.43 5.49 84.83 0.47 0.90 16 17 N -0.92 -56.32 13.96 21.61 0.30 -56.02 16 18 Si 0.97 46.53 28.62 68.60 1.96 48.49 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.26 -12.53 7.11 99.48 0.71 -11.83 16 22 C -0.19 -7.54 9.99 22.39 0.22 -7.31 16 23 C -0.07 -2.03 9.69 22.25 0.22 -1.82 16 24 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 28 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 29 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 32 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 33 H 0.10 1.24 8.08 -2.39 -0.02 1.22 16 34 H 0.09 1.28 8.08 -2.38 -0.02 1.26 16 35 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 36 H 0.10 5.23 5.64 -2.91 -0.02 5.21 16 37 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 38 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 39 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -74.99 337.19 7.20 -67.79 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 1.03 Total: 12.97 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 4.27 Total: -36.91 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.30 Total: -56.02 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -0.38 Total: -36.33 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.96 Total: 48.49 kcal Total: -74.99 7.20 -67.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249975436.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.926 kcal (2) G-P(sol) polarization free energy of solvation -74.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds