Wall clock time and date at job start Mon Mar 30 2020 23:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45196 * 109.47171 * 2 1 4 4 C 1.34754 * 116.99911 * 180.02562 * 3 2 1 5 5 O 1.21503 * 120.00114 * 359.97438 * 4 3 2 6 6 C 1.47464 * 119.99802 * 179.97438 * 4 3 2 7 7 C 1.39815 * 120.09513 * 359.97438 * 6 4 3 8 8 C 1.37663 * 119.90562 * 179.76571 * 7 6 4 9 9 C 1.39036 * 120.09074 * 0.50979 * 8 7 6 10 10 O 1.35697 * 119.90301 * 179.76402 * 9 8 7 11 11 C 1.42905 * 116.99992 * 359.72472 * 10 9 8 12 12 C 1.38989 * 120.18853 * 359.49224 * 9 8 7 13 13 C 1.50696 * 119.95296 * 180.27512 * 12 9 8 14 14 C 1.53001 * 109.47256 * 84.99816 * 13 12 9 15 15 C 1.50696 * 109.47256 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00116 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00219 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99955 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00184 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46968 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47168 * 119.99638 * 19 17 15 22 22 H 1.48497 * 109.46777 * 239.99727 * 19 17 15 23 23 C 1.37698 * 120.09301 * 0.24971 * 12 9 8 24 24 H 1.09000 * 109.47246 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47780 * 300.00220 * 1 2 3 26 26 H 1.09005 * 109.47179 * 60.00616 * 1 2 3 27 27 H 1.09000 * 109.47242 * 239.99249 * 2 1 3 28 28 H 1.09001 * 109.46881 * 119.99793 * 2 1 3 29 29 H 1.07998 * 120.04566 * 0.04638 * 7 6 4 30 30 H 1.08001 * 119.95190 * 180.27685 * 8 7 6 31 31 H 1.09001 * 109.47103 * 60.00481 * 11 10 9 32 32 H 1.09004 * 109.47054 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.47187 * 300.00041 * 11 10 9 34 34 H 1.09005 * 109.47164 * 204.99651 * 13 12 9 35 35 H 1.08996 * 109.47331 * 324.99711 * 13 12 9 36 36 H 1.09005 * 109.46899 * 299.99997 * 14 13 12 37 37 H 1.08996 * 109.47036 * 59.99714 * 14 13 12 38 38 H 0.96999 * 120.00437 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.04780 * 179.97438 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0900 0.5819 -0.0005 6 6 3.9135 2.9081 -0.0011 7 6 3.0636 4.0183 -0.0017 8 6 3.5940 5.2887 0.0026 9 6 4.9727 5.4685 -0.0032 10 8 5.4913 6.7225 -0.0037 11 6 4.5627 7.8087 -0.0043 12 6 5.8211 4.3677 -0.0027 13 6 7.3146 4.5687 -0.0027 14 6 7.8032 4.7620 1.4342 15 6 9.2968 4.9625 1.4342 16 1 9.8429 4.9534 0.5025 17 6 9.9662 5.1575 2.6237 18 7 9.3012 5.1691 3.7583 19 14 11.8175 5.4067 2.6237 20 1 12.3244 5.3513 1.2289 21 1 12.1389 6.7302 3.2154 22 1 12.4610 4.3361 3.4267 23 6 5.2989 3.0935 -0.0017 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3635 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.9926 3.8795 -0.0009 30 1 2.9382 6.1468 0.0067 31 1 3.9360 7.7514 0.8857 32 1 5.1077 8.7527 -0.0043 33 1 3.9360 7.7505 -0.8943 34 1 7.7990 3.6939 -0.4366 35 1 7.5624 5.4512 -0.5925 36 1 7.3188 5.6368 1.8681 37 1 7.5554 3.8796 2.0240 38 1 9.7721 5.3059 4.5952 39 1 5.9588 2.2386 -0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:45 Heat of formation + Delta-G solvation = -116.782625 kcal Electronic energy + Delta-G solvation = -21017.637640 eV Core-core repulsion = 17697.236562 eV Total energy + Delta-G solvation = -3320.401078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.56553 -39.77255 -37.31418 -36.36099 -34.16994 -32.29876 -31.80324 -30.27030 -29.08870 -27.38565 -25.08026 -24.30609 -22.69886 -22.08415 -20.98532 -20.07572 -17.82823 -17.57487 -16.70333 -16.54559 -16.18748 -15.90556 -15.55831 -14.45490 -14.37961 -14.21808 -13.80961 -13.79148 -13.08456 -12.95308 -12.73859 -12.62306 -12.30738 -12.09467 -11.98463 -11.82217 -11.65888 -11.18162 -10.95986 -10.90234 -10.71965 -10.61359 -10.48814 -10.35979 -9.76341 -9.62769 -9.03059 -8.63027 -8.29028 -7.90123 -5.93992 -3.96105 0.94559 1.54320 2.65985 2.71100 3.34988 3.42176 3.43664 3.46666 3.96291 4.51024 4.69343 4.74680 4.83242 4.86642 4.94040 5.08758 5.15622 5.23140 5.37752 5.41849 5.42316 5.56144 5.56197 5.59946 5.73405 5.81329 6.06828 6.15572 6.31468 6.40377 6.52525 6.67540 6.76686 6.91989 7.14561 7.54855 7.75431 7.85966 7.90439 8.06814 8.47467 9.10885 9.67230 11.17297 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018541 B = 0.004025 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.798185 B = 6954.672654 C = 8070.561304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.358 6.358 4 C 0.516 3.484 5 O -0.511 6.511 6 C -0.172 4.172 7 C -0.036 4.036 8 C -0.227 4.227 9 C 0.168 3.832 10 O -0.294 6.294 11 C 0.025 3.975 12 C -0.101 4.101 13 C -0.070 4.070 14 C 0.031 3.969 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.017 4.017 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.259 0.741 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.647 -2.093 -8.792 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.276 6.276 4 C 0.362 3.638 5 O -0.401 6.401 6 C -0.174 4.174 7 C -0.054 4.054 8 C -0.245 4.245 9 C 0.121 3.879 10 O -0.206 6.206 11 C -0.070 4.070 12 C -0.102 4.102 13 C -0.108 4.108 14 C -0.006 4.006 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.036 4.036 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.228 -2.311 -8.606 20.290 hybrid contribution 0.680 0.092 0.245 0.728 sum -17.549 -2.219 -8.362 19.565 Atomic orbital electron populations 1.21800 0.92742 1.02855 1.03470 1.22991 0.95158 0.80384 1.02672 1.86539 1.24274 1.32057 1.84688 1.21139 0.80203 0.90022 0.72452 1.90833 1.60274 1.42544 1.46428 1.18884 0.93929 0.89549 1.14998 1.21032 0.99564 0.90883 0.93949 1.21137 0.93739 0.98338 1.11317 1.19267 0.91342 0.85004 0.92260 1.86214 1.35223 1.12079 1.87041 1.23106 0.94025 0.88885 1.01029 1.19711 0.98088 0.89690 1.02699 1.20705 0.86513 1.01403 1.02145 1.19062 0.95566 0.97290 0.88703 1.21279 0.92724 1.48766 0.92761 0.92552 1.25017 0.98243 0.95534 0.95676 1.69985 1.35461 1.50411 0.97609 0.86551 0.85838 0.77645 0.78057 1.19712 1.21091 1.21068 1.21019 0.92820 0.97001 0.92726 0.90331 0.91465 0.91538 0.91281 0.91192 0.84810 0.84970 0.92553 0.88110 0.92837 0.92057 0.91515 0.96191 0.96626 0.93138 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.29 37.15 0.38 -0.68 16 2 C 0.06 0.63 6.20 37.15 0.23 0.86 16 3 O -0.36 -4.69 9.46 -40.64 -0.38 -5.07 16 4 C 0.52 8.16 7.89 34.49 0.27 8.43 16 5 O -0.51 -9.33 16.13 -19.27 -0.31 -9.64 16 6 C -0.17 -2.75 5.87 -104.97 -0.62 -3.36 16 7 C -0.04 -0.49 9.61 -39.20 -0.38 -0.86 16 8 C -0.23 -3.11 9.01 -39.50 -0.36 -3.47 16 9 C 0.17 2.85 6.67 -39.01 -0.26 2.59 16 10 O -0.29 -4.95 9.61 -18.80 -0.18 -5.13 16 11 C 0.02 0.28 9.81 101.05 0.99 1.27 16 12 C -0.10 -1.91 5.14 -104.54 -0.54 -2.45 16 13 C -0.07 -1.52 5.00 -27.88 -0.14 -1.66 16 14 C 0.03 0.82 4.95 -27.88 -0.14 0.68 16 15 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 19 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 23 C -0.02 -0.31 9.21 -39.20 -0.36 -0.67 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.13 1.46 7.60 -52.49 -0.40 1.06 16 30 H 0.13 1.39 6.28 -52.49 -0.33 1.06 16 31 H 0.06 0.57 7.64 -51.93 -0.40 0.17 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 34 H 0.06 1.27 8.05 -51.93 -0.42 0.85 16 35 H 0.07 1.43 7.68 -51.93 -0.40 1.03 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.14 2.56 7.64 -52.49 -0.40 2.16 16 LS Contribution 337.30 15.07 5.08 5.08 Total: -1.00 -33.69 337.30 -7.06 -40.75 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -5.66 Total: -3.25 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -1.32 Total: -13.01 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.74 Total: -26.72 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.88 Total: -19.85 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.69 -7.06 -40.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.032 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds