Wall clock time and date at job start Mon Mar 30 2020 23:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45196 * 109.47171 * 2 1 4 4 C 1.34754 * 116.99911 * 180.02562 * 3 2 1 5 5 O 1.21503 * 120.00114 * 359.97438 * 4 3 2 6 6 C 1.47464 * 119.99802 * 179.97438 * 4 3 2 7 7 C 1.39815 * 120.09513 * 359.97438 * 6 4 3 8 8 C 1.37663 * 119.90562 * 179.76571 * 7 6 4 9 9 C 1.39036 * 120.09074 * 0.50979 * 8 7 6 10 10 O 1.35697 * 119.90301 * 179.76402 * 9 8 7 11 11 C 1.42905 * 116.99992 * 359.72472 * 10 9 8 12 12 C 1.38989 * 120.18853 * 359.49224 * 9 8 7 13 13 C 1.50696 * 119.95296 * 180.27512 * 12 9 8 14 14 C 1.53001 * 109.47256 * 84.99816 * 13 12 9 15 15 C 1.50696 * 109.47256 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00116 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00219 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99955 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00184 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46968 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47168 * 119.99638 * 19 17 15 22 22 H 1.48497 * 109.46777 * 239.99727 * 19 17 15 23 23 C 1.37698 * 120.09301 * 0.24971 * 12 9 8 24 24 H 1.09000 * 109.47246 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47780 * 300.00220 * 1 2 3 26 26 H 1.09005 * 109.47179 * 60.00616 * 1 2 3 27 27 H 1.09000 * 109.47242 * 239.99249 * 2 1 3 28 28 H 1.09001 * 109.46881 * 119.99793 * 2 1 3 29 29 H 1.07998 * 120.04566 * 0.04638 * 7 6 4 30 30 H 1.08001 * 119.95190 * 180.27685 * 8 7 6 31 31 H 1.09001 * 109.47103 * 60.00481 * 11 10 9 32 32 H 1.09004 * 109.47054 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.47187 * 300.00041 * 11 10 9 34 34 H 1.09005 * 109.47164 * 204.99651 * 13 12 9 35 35 H 1.08996 * 109.47331 * 324.99711 * 13 12 9 36 36 H 1.09005 * 109.46899 * 299.99997 * 14 13 12 37 37 H 1.08996 * 109.47036 * 59.99714 * 14 13 12 38 38 H 0.96999 * 120.00437 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.04780 * 179.97438 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0900 0.5819 -0.0005 6 6 3.9135 2.9081 -0.0011 7 6 3.0636 4.0183 -0.0017 8 6 3.5940 5.2887 0.0026 9 6 4.9727 5.4685 -0.0032 10 8 5.4913 6.7225 -0.0037 11 6 4.5627 7.8087 -0.0043 12 6 5.8211 4.3677 -0.0027 13 6 7.3146 4.5687 -0.0027 14 6 7.8032 4.7620 1.4342 15 6 9.2968 4.9625 1.4342 16 1 9.8429 4.9534 0.5025 17 6 9.9662 5.1575 2.6237 18 7 9.3012 5.1691 3.7583 19 14 11.8175 5.4067 2.6237 20 1 12.3244 5.3513 1.2289 21 1 12.1389 6.7302 3.2154 22 1 12.4610 4.3361 3.4267 23 6 5.2989 3.0935 -0.0017 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3635 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.9926 3.8795 -0.0009 30 1 2.9382 6.1468 0.0067 31 1 3.9360 7.7514 0.8857 32 1 5.1077 8.7527 -0.0043 33 1 3.9360 7.7505 -0.8943 34 1 7.7990 3.6939 -0.4366 35 1 7.5624 5.4512 -0.5925 36 1 7.3188 5.6368 1.8681 37 1 7.5554 3.8796 2.0240 38 1 9.7721 5.3059 4.5952 39 1 5.9588 2.2386 -0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:44 Heat of formation + Delta-G solvation = -136.410214 kcal Electronic energy + Delta-G solvation = -21018.488756 eV Core-core repulsion = 17697.236562 eV Total energy + Delta-G solvation = -3321.252194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77091 -40.96307 -38.49938 -37.54960 -36.03037 -34.14008 -32.67544 -31.46266 -30.80319 -28.37788 -27.00467 -25.35076 -23.93551 -23.42921 -22.42014 -21.48509 -19.03312 -18.84230 -18.42979 -17.78531 -17.58201 -17.11511 -16.71146 -16.45466 -15.61456 -15.17193 -15.11974 -14.87236 -14.63980 -14.29078 -14.16110 -13.75583 -13.62137 -13.55446 -13.07152 -12.92771 -12.85374 -12.78451 -12.51081 -12.47230 -12.03632 -11.92765 -11.78977 -11.63299 -11.56004 -11.52578 -11.14304 -10.55618 -9.93562 -9.22566 -8.18902 -6.30604 -0.30168 0.29748 1.39526 1.40540 1.46363 1.54188 1.59884 2.34878 2.41411 2.71119 3.13682 3.64721 3.73385 3.78531 4.02526 4.09976 4.11933 4.22823 4.35945 4.40528 4.44857 4.49675 4.56252 4.75886 4.81716 4.84548 4.91213 4.95436 5.08145 5.16946 5.18707 5.20825 5.29098 5.41744 5.50071 5.62417 5.77848 5.85089 6.23648 6.41562 6.67878 6.85680 7.38185 8.93130 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018541 B = 0.004025 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.798185 B = 6954.672654 C = 8070.561304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.350 6.350 4 C 0.519 3.481 5 O -0.546 6.546 6 C -0.185 4.185 7 C -0.015 4.015 8 C -0.213 4.213 9 C 0.162 3.838 10 O -0.327 6.327 11 C 0.012 3.988 12 C -0.135 4.135 13 C -0.055 4.055 14 C 0.042 3.958 15 C -0.541 4.541 16 H 0.061 0.939 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.278 1.278 23 C -0.028 4.028 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.171 0.829 30 H 0.175 0.825 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.064 0.936 36 H -0.008 1.008 37 H -0.017 1.017 38 H 0.263 0.737 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.539 -1.234 -9.596 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.267 6.267 4 C 0.367 3.633 5 O -0.438 6.438 6 C -0.186 4.186 7 C -0.033 4.033 8 C -0.232 4.232 9 C 0.115 3.885 10 O -0.240 6.240 11 C -0.081 4.081 12 C -0.136 4.136 13 C -0.092 4.092 14 C 0.005 3.995 15 C -0.579 4.579 16 H 0.079 0.921 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.204 1.204 23 C -0.046 4.046 24 H 0.119 0.881 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.189 0.811 30 H 0.192 0.808 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.010 0.990 37 H 0.002 0.998 38 H 0.072 0.928 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.151 -1.441 -9.427 22.294 hybrid contribution 1.137 -0.158 0.501 1.252 sum -19.014 -1.599 -8.925 21.066 Atomic orbital electron populations 1.21820 0.89757 1.04492 1.03949 1.23356 0.97398 0.78923 1.02541 1.86524 1.22339 1.33886 1.83947 1.21137 0.80972 0.89539 0.71681 1.90815 1.61276 1.43528 1.48159 1.18973 0.93340 0.90739 1.15581 1.21442 1.00975 0.89824 0.91073 1.21524 0.92556 0.99818 1.09267 1.19407 0.92493 0.84663 0.91896 1.86167 1.37922 1.12942 1.86937 1.23486 0.94108 0.87528 1.03009 1.19477 0.96635 0.91235 1.06248 1.20351 0.89153 1.01165 0.98522 1.18850 0.94852 0.94382 0.91429 1.21712 0.93987 1.48958 0.93250 0.92069 1.26006 1.03862 0.94898 0.95124 1.70123 1.37791 1.51119 0.98386 0.85368 0.78999 0.77852 0.78642 1.18490 1.20138 1.20415 1.20904 0.94006 0.96166 0.93541 0.88127 0.91141 0.90830 0.91244 0.91696 0.81111 0.80812 0.91265 0.86982 0.89929 0.92133 0.91704 0.98962 0.99831 0.92800 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 10.29 71.98 0.74 -0.87 16 2 C 0.05 0.98 6.20 71.98 0.45 1.42 16 3 O -0.35 -8.58 9.46 -56.64 -0.54 -9.11 16 4 C 0.52 16.28 7.89 70.25 0.55 16.83 16 5 O -0.55 -20.46 16.13 19.83 0.32 -20.14 16 6 C -0.18 -5.81 5.87 -20.09 -0.12 -5.93 16 7 C -0.02 -0.37 9.61 22.52 0.22 -0.15 16 8 C -0.21 -5.22 9.01 22.33 0.20 -5.02 16 9 C 0.16 5.42 6.67 22.64 0.15 5.57 16 10 O -0.33 -10.89 9.61 -90.17 -0.87 -11.75 16 11 C 0.01 0.25 9.81 113.37 1.11 1.36 16 12 C -0.14 -5.31 5.14 -19.81 -0.10 -5.41 16 13 C -0.05 -2.49 5.00 29.85 0.15 -2.34 16 14 C 0.04 2.37 4.95 29.85 0.15 2.52 16 15 C -0.54 -32.28 9.11 25.60 0.23 -32.05 16 16 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 17 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 18 N -0.93 -58.87 13.29 21.45 0.28 -58.59 16 19 Si 0.97 45.70 29.54 68.60 2.03 47.72 16 20 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 C -0.03 -1.03 9.21 22.51 0.21 -0.82 16 24 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.17 2.90 7.60 -2.91 -0.02 2.88 16 30 H 0.17 2.77 6.28 -2.91 -0.02 2.75 16 31 H 0.07 1.20 7.64 -2.39 -0.02 1.18 16 32 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.08 1.16 7.66 -2.39 -0.02 1.15 16 34 H 0.06 2.67 8.05 -2.38 -0.02 2.65 16 35 H 0.06 2.90 7.68 -2.39 -0.02 2.88 16 36 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 37 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 38 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.13 4.93 7.64 -2.91 -0.02 4.91 16 Total: -1.00 -76.36 337.30 6.67 -69.70 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.04 Total: 6.69 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 4.40 Total: -24.51 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.28 Total: -58.59 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -1.08 Total: -41.01 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -76.36 6.67 -69.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.712 kcal (2) G-P(sol) polarization free energy of solvation -76.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds