Wall clock time and date at job start Mon Mar 30 2020 23:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34750 * 116.99914 * 2 1 4 4 O 1.21514 * 120.00021 * 0.02562 * 3 2 1 5 5 C 1.47401 * 120.00111 * 179.97438 * 3 2 1 6 6 C 1.39768 * 120.19707 * 0.03039 * 5 3 2 7 7 C 1.37761 * 119.90175 * 179.72265 * 6 5 3 8 8 C 1.38569 * 120.30875 * 0.50534 * 7 6 5 9 9 C 1.50703 * 119.79958 * 179.76651 * 8 7 6 10 10 C 1.52996 * 109.46946 * 269.72615 * 9 8 7 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47216 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 119.99848 * 16 14 12 19 19 H 1.48501 * 109.47057 * 239.99829 * 16 14 12 20 20 C 1.38053 * 120.39922 * 359.48781 * 8 7 6 21 21 C 1.38703 * 120.09255 * 0.25653 * 20 8 7 22 22 O 1.35644 * 120.15461 * 179.97438 * 21 20 8 23 23 C 1.42896 * 116.99900 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47626 * 59.99627 * 1 2 3 25 25 H 1.09007 * 109.47055 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47269 * 299.99505 * 1 2 3 27 27 H 1.07997 * 120.04874 * 359.97438 * 6 5 3 28 28 H 1.07994 * 119.84720 * 180.27543 * 7 6 5 29 29 H 1.08992 * 109.46894 * 149.72334 * 9 8 7 30 30 H 1.08996 * 109.46805 * 29.72484 * 9 8 7 31 31 H 1.09001 * 109.47372 * 60.00128 * 10 9 8 32 32 H 1.09004 * 109.47108 * 299.99872 * 10 9 8 33 33 H 1.09001 * 109.46832 * 59.99979 * 11 10 9 34 34 H 1.09000 * 109.47611 * 300.00276 * 11 10 9 35 35 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 36 36 H 1.08004 * 119.95189 * 180.23543 * 20 8 7 37 37 H 1.08999 * 109.47316 * 179.97438 * 23 22 21 38 38 H 1.09000 * 109.47091 * 300.00075 * 23 22 21 39 39 H 1.08997 * 109.47151 * 60.00127 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.3010 0.1083 0.0005 7 6 5.6763 0.1875 -0.0048 8 6 6.3057 1.4220 0.0006 9 6 7.8109 1.4953 0.0001 10 6 8.3207 1.5203 1.4424 11 6 9.8489 1.5940 1.4419 12 6 10.3511 1.6193 2.8626 13 1 9.6504 1.5857 3.6837 14 6 11.7051 1.6854 3.1141 15 7 12.5584 1.7268 2.1141 16 14 12.3276 1.7159 4.8751 17 1 11.1743 1.6605 5.8088 18 1 13.2107 0.5451 5.1084 19 1 13.0927 2.9672 5.1079 20 6 5.5621 2.5852 0.0006 21 6 4.1764 2.5248 0.0006 22 8 3.4446 3.6669 0.0011 23 6 4.1667 4.9001 0.0011 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 3.8149 -0.8561 0.0004 28 1 6.2667 -0.7167 -0.0093 29 1 8.1303 2.4017 -0.5140 30 1 8.2169 0.6240 -0.5137 31 1 8.0013 0.6138 1.9565 32 1 7.9147 2.3917 1.9562 33 1 10.1687 2.5004 0.9277 34 1 10.2546 0.7225 0.9282 35 1 13.5110 1.7729 2.2912 36 1 6.0602 3.5436 0.0010 37 1 3.4635 5.7329 0.0011 38 1 4.7940 4.9537 0.8909 39 1 4.7933 4.9542 -0.8891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250064965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:50 Heat of formation + Delta-G solvation = -117.525398 kcal Electronic energy + Delta-G solvation = -20811.511267 eV Core-core repulsion = 17491.077979 eV Total energy + Delta-G solvation = -3320.433287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.80665 -39.64622 -37.79304 -36.34215 -34.75446 -32.78881 -30.87271 -30.21717 -28.19056 -27.69334 -26.63313 -24.24226 -22.27853 -22.22786 -20.86804 -20.14555 -18.23010 -17.36773 -16.95274 -16.44563 -16.28098 -15.89332 -15.72971 -14.75294 -14.56790 -14.42250 -14.09941 -13.50533 -13.44926 -13.37730 -12.87367 -12.51649 -12.29013 -12.12427 -11.91708 -11.71894 -11.30401 -11.21059 -11.13178 -10.87707 -10.81805 -10.66135 -10.53899 -10.34566 -9.74986 -9.44809 -9.15907 -8.79148 -8.37873 -8.27782 -6.02765 -4.05082 0.72786 1.37813 2.57982 2.63246 3.12717 3.29319 3.37070 3.41406 3.73578 4.43969 4.61643 4.74515 4.84515 4.94309 5.01517 5.04893 5.09347 5.15003 5.24627 5.33322 5.35032 5.42735 5.48426 5.66562 5.78429 5.95034 6.05714 6.18232 6.27319 6.33393 6.44638 6.65874 6.77938 6.80601 7.06175 7.24915 7.64443 7.77517 7.78599 7.97212 8.39766 9.02319 9.59392 11.08535 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.003155 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.671282 B = 8872.937633 C = 9226.564956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.360 6.360 3 C 0.511 3.489 4 O -0.496 6.496 5 C -0.183 4.183 6 C -0.023 4.023 7 C -0.171 4.171 8 C 0.016 3.984 9 C -0.093 4.093 10 C -0.102 4.102 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.224 4.224 21 C 0.193 3.807 22 O -0.289 6.289 23 C 0.020 3.980 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.141 0.859 28 H 0.134 0.866 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.260 0.740 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.203 -1.024 -6.912 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.356 3.644 4 O -0.384 6.384 5 C -0.185 4.185 6 C -0.041 4.041 7 C -0.189 4.189 8 C 0.016 3.984 9 C -0.131 4.131 10 C -0.140 4.140 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.243 4.243 21 C 0.146 3.854 22 O -0.200 6.200 23 C -0.075 4.075 24 H 0.079 0.921 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.156 0.844 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.476 -0.669 -6.947 21.633 hybrid contribution 0.530 0.246 0.977 1.138 sum -19.946 -0.423 -5.971 20.825 Atomic orbital electron populations 1.23212 0.76412 1.03438 1.02456 1.86541 1.23192 1.33052 1.84958 1.20938 0.88839 0.81358 0.73240 1.90862 1.66472 1.35661 1.45417 1.18285 0.89165 0.92019 1.19048 1.21256 0.93629 0.96898 0.92318 1.21023 0.93973 0.97991 1.05930 1.20320 0.97206 0.92104 0.88820 1.20972 0.88302 1.03188 1.00593 1.21635 0.99841 1.00794 0.91737 1.19126 0.88140 0.97291 0.97089 1.21293 0.91722 1.50248 0.92578 0.92646 1.25025 0.97094 0.95340 0.97027 1.69975 1.02109 1.50893 1.30558 0.86552 0.78880 0.77599 0.85088 1.19720 1.20984 1.21023 1.21143 0.91450 1.00245 1.11441 1.18978 0.89814 0.85572 0.91074 1.86280 1.34521 1.12425 1.86759 1.23188 0.98237 0.84209 1.01857 0.92051 0.88190 0.92003 0.84097 0.84783 0.90907 0.90553 0.92971 0.93216 0.96566 0.96460 0.93049 0.84376 0.88076 0.92088 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.29 9.82 -40.63 -0.40 -4.69 16 3 C 0.51 7.38 7.89 34.46 0.27 7.65 16 4 O -0.50 -8.29 14.95 -26.60 -0.40 -8.69 16 5 C -0.18 -2.60 5.89 -104.86 -0.62 -3.21 16 6 C -0.02 -0.28 9.61 -39.18 -0.38 -0.66 16 7 C -0.17 -2.20 9.67 -39.63 -0.38 -2.58 16 8 C 0.02 0.22 5.14 -104.57 -0.54 -0.31 16 9 C -0.09 -1.46 5.34 -27.88 -0.15 -1.61 16 10 C -0.10 -2.01 5.13 -26.73 -0.14 -2.15 16 11 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 12 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 16 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.22 -3.09 8.67 -39.48 -0.34 -3.43 16 21 C 0.19 2.80 6.70 -38.67 -0.26 2.54 16 22 O -0.29 -4.14 8.57 -40.51 -0.35 -4.49 16 23 C 0.02 0.20 9.81 101.05 0.99 1.19 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.14 1.40 7.61 -52.49 -0.40 1.00 16 28 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 30 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.14 1.70 6.30 -52.48 -0.33 1.37 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 39 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 LS Contribution 336.06 15.07 5.06 5.06 Total: -1.00 -33.00 336.06 -7.09 -40.09 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.71 Total: -3.72 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.02 Total: -14.15 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -1.14 Total: -17.86 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.00 -7.09 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250064965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.431 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds