Wall clock time and date at job start Mon Mar 30 2020 23:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34750 * 116.99914 * 2 1 4 4 O 1.21514 * 120.00021 * 0.02562 * 3 2 1 5 5 C 1.47401 * 120.00111 * 179.97438 * 3 2 1 6 6 C 1.39768 * 120.19707 * 0.03039 * 5 3 2 7 7 C 1.37761 * 119.90175 * 179.72265 * 6 5 3 8 8 C 1.38569 * 120.30875 * 0.50534 * 7 6 5 9 9 C 1.50703 * 119.79958 * 179.76651 * 8 7 6 10 10 C 1.52996 * 109.46946 * 269.72615 * 9 8 7 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47216 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 119.99848 * 16 14 12 19 19 H 1.48501 * 109.47057 * 239.99829 * 16 14 12 20 20 C 1.38053 * 120.39922 * 359.48781 * 8 7 6 21 21 C 1.38703 * 120.09255 * 0.25653 * 20 8 7 22 22 O 1.35644 * 120.15461 * 179.97438 * 21 20 8 23 23 C 1.42896 * 116.99900 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47626 * 59.99627 * 1 2 3 25 25 H 1.09007 * 109.47055 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47269 * 299.99505 * 1 2 3 27 27 H 1.07997 * 120.04874 * 359.97438 * 6 5 3 28 28 H 1.07994 * 119.84720 * 180.27543 * 7 6 5 29 29 H 1.08992 * 109.46894 * 149.72334 * 9 8 7 30 30 H 1.08996 * 109.46805 * 29.72484 * 9 8 7 31 31 H 1.09001 * 109.47372 * 60.00128 * 10 9 8 32 32 H 1.09004 * 109.47108 * 299.99872 * 10 9 8 33 33 H 1.09001 * 109.46832 * 59.99979 * 11 10 9 34 34 H 1.09000 * 109.47611 * 300.00276 * 11 10 9 35 35 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 36 36 H 1.08004 * 119.95189 * 180.23543 * 20 8 7 37 37 H 1.08999 * 109.47316 * 179.97438 * 23 22 21 38 38 H 1.09000 * 109.47091 * 300.00075 * 23 22 21 39 39 H 1.08997 * 109.47151 * 60.00127 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.3010 0.1083 0.0005 7 6 5.6763 0.1875 -0.0048 8 6 6.3057 1.4220 0.0006 9 6 7.8109 1.4953 0.0001 10 6 8.3207 1.5203 1.4424 11 6 9.8489 1.5940 1.4419 12 6 10.3511 1.6193 2.8626 13 1 9.6504 1.5857 3.6837 14 6 11.7051 1.6854 3.1141 15 7 12.5584 1.7268 2.1141 16 14 12.3276 1.7159 4.8751 17 1 11.1743 1.6605 5.8088 18 1 13.2107 0.5451 5.1084 19 1 13.0927 2.9672 5.1079 20 6 5.5621 2.5852 0.0006 21 6 4.1764 2.5248 0.0006 22 8 3.4446 3.6669 0.0011 23 6 4.1667 4.9001 0.0011 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 3.8149 -0.8561 0.0004 28 1 6.2667 -0.7167 -0.0093 29 1 8.1303 2.4017 -0.5140 30 1 8.2169 0.6240 -0.5137 31 1 8.0013 0.6138 1.9565 32 1 7.9147 2.3917 1.9562 33 1 10.1687 2.5004 0.9277 34 1 10.2546 0.7225 0.9282 35 1 13.5110 1.7729 2.2912 36 1 6.0602 3.5436 0.0010 37 1 3.4635 5.7329 0.0011 38 1 4.7940 4.9537 0.8909 39 1 4.7933 4.9542 -0.8891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250064965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:49 Heat of formation + Delta-G solvation = -135.220114 kcal Electronic energy + Delta-G solvation = -20812.278567 eV Core-core repulsion = 17491.077979 eV Total energy + Delta-G solvation = -3321.200588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82977 -40.65095 -38.84631 -37.36238 -36.34883 -34.57230 -32.37471 -31.22698 -29.36373 -28.70755 -27.74846 -25.84094 -23.62113 -23.23596 -22.11720 -21.61730 -19.25415 -18.57139 -18.22970 -17.92565 -17.41024 -16.93668 -16.65653 -16.51726 -15.72905 -15.66279 -15.31716 -14.62239 -14.51016 -14.44268 -14.26750 -14.08795 -13.37140 -13.22581 -13.18058 -12.97171 -12.70762 -12.56378 -12.48881 -12.39379 -12.20823 -11.93334 -11.76599 -11.51422 -11.44227 -11.27945 -11.09161 -10.53953 -9.94684 -9.31556 -8.19012 -6.29273 -0.34050 0.36923 1.40260 1.41149 1.50329 1.53999 1.72081 2.22184 2.41815 2.69457 3.14474 3.56938 3.75727 3.88198 4.03806 4.25523 4.29424 4.33539 4.34148 4.35362 4.44657 4.47606 4.53259 4.66443 4.70158 4.72105 4.89091 4.98032 5.09308 5.17666 5.25275 5.27936 5.35602 5.55602 5.57007 5.68043 5.80793 5.89309 6.26680 6.28607 6.75499 6.88348 7.39990 8.92676 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.003155 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.671282 B = 8872.937633 C = 9226.564956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.358 6.358 3 C 0.511 3.489 4 O -0.527 6.527 5 C -0.199 4.199 6 C -0.012 4.012 7 C -0.171 4.171 8 C 0.005 3.995 9 C -0.082 4.082 10 C -0.089 4.089 11 C 0.023 3.977 12 C -0.542 4.542 13 H 0.057 0.943 14 C 0.000 4.000 15 N -0.932 5.932 16 Si 0.961 3.039 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.279 1.279 20 C -0.225 4.225 21 C 0.181 3.819 22 O -0.310 6.310 23 C 0.012 3.988 24 H 0.061 0.939 25 H 0.136 0.864 26 H 0.059 0.941 27 H 0.167 0.833 28 H 0.152 0.848 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.047 0.953 33 H -0.006 1.006 34 H -0.003 1.003 35 H 0.263 0.737 36 H 0.148 0.852 37 H 0.119 0.881 38 H 0.064 0.936 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.119 -1.810 -6.338 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.275 6.275 3 C 0.358 3.642 4 O -0.417 6.417 5 C -0.201 4.201 6 C -0.030 4.030 7 C -0.189 4.189 8 C 0.005 3.995 9 C -0.119 4.119 10 C -0.127 4.127 11 C -0.014 4.014 12 C -0.580 4.580 13 H 0.075 0.925 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.786 3.214 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.205 1.205 20 C -0.244 4.244 21 C 0.133 3.867 22 O -0.222 6.222 23 C -0.082 4.082 24 H 0.080 0.920 25 H 0.154 0.846 26 H 0.078 0.922 27 H 0.184 0.816 28 H 0.169 0.831 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.072 0.928 36 H 0.166 0.834 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.406 -1.467 -6.374 22.383 hybrid contribution 0.749 0.481 0.764 1.173 sum -20.658 -0.986 -5.610 21.429 Atomic orbital electron populations 1.23552 0.74461 1.05815 1.02405 1.86526 1.25085 1.31587 1.84317 1.21054 0.89016 0.81615 0.72524 1.90840 1.67118 1.36763 1.47028 1.18583 0.89468 0.92710 1.19345 1.21487 0.93294 0.97362 0.90878 1.21241 0.94395 0.98092 1.05156 1.20204 0.96060 0.92982 0.90256 1.20763 0.89556 1.03752 0.97874 1.21390 0.95938 1.00726 0.94623 1.19039 0.91863 0.95181 0.95317 1.21748 0.92232 1.50028 0.93977 0.92482 1.25932 0.97430 0.94889 1.01495 1.70093 1.02521 1.51792 1.32894 0.85462 0.78423 0.77790 0.79772 1.18766 1.20338 1.20451 1.21235 0.91337 1.00675 1.11149 1.19159 0.90065 0.85995 0.91435 1.86257 1.35770 1.13415 1.86767 1.23445 0.98924 0.83239 1.02582 0.92039 0.84590 0.92211 0.81579 0.83057 0.90652 0.89860 0.92816 0.93401 0.98736 0.98466 0.92797 0.83440 0.86245 0.91730 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -7.92 9.82 -56.61 -0.56 -8.48 16 3 C 0.51 14.36 7.89 70.24 0.55 14.91 16 4 O -0.53 -17.55 14.95 26.79 0.40 -17.15 16 5 C -0.20 -5.43 5.89 -20.02 -0.12 -5.55 16 6 C -0.01 -0.28 9.61 22.53 0.22 -0.06 16 7 C -0.17 -4.04 9.67 22.24 0.21 -3.82 16 8 C 0.01 0.14 5.14 -19.83 -0.10 0.04 16 9 C -0.08 -2.51 5.34 29.85 0.16 -2.35 16 10 C -0.09 -3.46 5.13 30.59 0.16 -3.30 16 11 C 0.02 1.17 4.97 29.85 0.15 1.32 16 12 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 13 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 14 C 0.00 0.01 5.46 84.65 0.46 0.47 16 15 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 16 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 17 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 C -0.23 -5.99 8.67 22.34 0.19 -5.80 16 21 C 0.18 5.12 6.70 22.86 0.15 5.28 16 22 O -0.31 -8.80 8.57 -68.66 -0.59 -9.39 16 23 C 0.01 0.24 9.81 113.37 1.11 1.35 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.14 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.17 2.81 7.61 -2.91 -0.02 2.79 16 28 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 29 H 0.07 2.24 8.08 -2.39 -0.02 2.22 16 30 H 0.08 2.41 8.08 -2.39 -0.02 2.39 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 33 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.15 3.50 6.30 -2.91 -0.02 3.48 16 37 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.18 7.66 -2.39 -0.02 1.16 16 39 H 0.07 1.17 7.66 -2.39 -0.02 1.15 16 Total: -1.00 -70.97 336.06 7.18 -63.78 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.03 Total: 7.08 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 4.58 Total: -26.04 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.28 Total: -55.72 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.74 Total: -35.02 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -70.97 7.18 -63.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250064965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.436 kcal (2) G-P(sol) polarization free energy of solvation -70.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds