Wall clock time and date at job start Mon Mar 30 2020 23:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34755 * 117.00145 * 2 1 4 4 O 1.21511 * 119.99447 * 0.02562 * 3 2 1 5 5 C 1.47393 * 120.00176 * 179.97438 * 3 2 1 6 6 C 1.39768 * 120.19798 * 0.02562 * 5 3 2 7 7 C 1.37765 * 119.90184 * 179.97438 * 6 5 3 8 8 C 1.50703 * 119.84496 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46946 * 90.00267 * 8 7 6 10 10 C 1.52997 * 109.46947 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99848 * 15 13 11 18 18 H 1.48501 * 109.47057 * 239.99829 * 15 13 11 19 19 C 1.38571 * 120.30777 * 0.27395 * 7 6 5 20 20 C 1.38052 * 120.40200 * 359.44302 * 19 7 6 21 21 C 1.38704 * 120.08700 * 0.55670 * 20 19 7 22 22 O 1.35642 * 120.15426 * 179.69823 * 21 20 19 23 23 C 1.42906 * 116.99831 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47315 * 59.99995 * 1 2 3 25 25 H 1.09000 * 109.47247 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47514 * 299.99509 * 1 2 3 27 27 H 1.08000 * 120.04678 * 359.97438 * 6 5 3 28 28 H 1.08992 * 109.46894 * 329.99986 * 8 7 6 29 29 H 1.08996 * 109.46805 * 210.00136 * 8 7 6 30 30 H 1.09001 * 109.47372 * 60.00128 * 9 8 7 31 31 H 1.09004 * 109.47108 * 299.99872 * 9 8 7 32 32 H 1.09001 * 109.46832 * 59.99979 * 10 9 8 33 33 H 1.09000 * 109.47611 * 300.00276 * 10 9 8 34 34 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 35 35 H 1.07999 * 119.79701 * 179.70531 * 19 7 6 36 36 H 1.07997 * 119.95298 * 180.25136 * 20 19 7 37 37 H 1.08998 * 109.46984 * 179.97438 * 23 22 21 38 38 H 1.08994 * 109.47032 * 299.99832 * 23 22 21 39 39 H 1.09005 * 109.46805 * 59.99626 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.3010 0.1083 0.0006 7 6 5.6763 0.1875 0.0006 8 6 6.5002 -1.0744 0.0012 9 6 6.7791 -1.5020 -1.4411 10 6 7.6161 -2.7827 -1.4405 11 6 7.8903 -3.2043 -2.8612 12 1 7.5063 -2.6172 -3.6823 13 6 8.6313 -4.3395 -3.1126 14 7 9.0984 -5.0547 -2.1126 15 14 8.9718 -4.8616 -4.8735 16 1 8.3400 -3.8952 -5.8073 17 1 10.4380 -4.8897 -5.1069 18 1 8.4075 -6.2154 -5.1063 19 6 6.3057 1.4220 0.0063 20 6 5.5622 2.5852 0.0005 21 6 4.1765 2.5248 0.0005 22 8 3.4446 3.6669 0.0010 23 6 4.1667 4.9001 0.0008 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 3.8148 -0.8561 0.0006 28 1 5.9537 -1.8649 0.5153 29 1 7.4440 -0.8918 0.5149 30 1 7.3257 -0.7114 -1.9553 31 1 5.8353 -1.6846 -1.9549 32 1 7.0698 -3.5735 -0.9262 33 1 8.5599 -2.5998 -0.9268 34 1 9.6201 -5.8532 -2.2896 35 1 7.3844 1.4745 0.0111 36 1 6.0602 3.5435 0.0009 37 1 3.4635 5.7328 0.0008 38 1 4.7940 4.9538 0.8905 39 1 4.7934 4.9540 -0.8894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:52 Heat of formation + Delta-G solvation = -116.226102 kcal Electronic energy + Delta-G solvation = -20861.345651 eV Core-core repulsion = 17540.968705 eV Total energy + Delta-G solvation = -3320.376946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.80418 -39.61561 -37.89579 -36.30125 -34.49652 -32.50181 -31.65656 -30.05135 -28.09834 -27.53146 -26.26954 -24.14569 -23.42140 -21.78037 -20.58493 -19.90389 -18.36859 -17.52051 -16.78042 -16.40984 -16.20432 -16.03709 -15.78148 -14.65986 -14.52601 -14.27367 -14.13995 -13.60345 -13.47899 -13.29230 -12.83066 -12.51125 -12.21441 -12.17870 -12.03699 -11.53075 -11.39126 -11.17917 -11.13026 -10.81005 -10.79380 -10.54441 -10.48547 -10.31193 -9.67474 -9.33644 -9.14864 -9.06654 -8.33605 -8.08091 -5.98719 -4.00692 0.71120 1.35552 2.59279 2.68118 3.08098 3.31851 3.39455 3.43901 3.72809 4.47455 4.59383 4.71466 4.79477 4.95455 4.97338 5.02540 5.09411 5.16124 5.28647 5.30574 5.37160 5.38466 5.48706 5.64923 5.91514 5.99661 6.07486 6.16920 6.33025 6.34801 6.48641 6.68984 6.84956 6.90231 7.14100 7.21396 7.69968 7.81165 7.84214 8.02001 8.45028 9.06909 9.63481 11.12580 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019558 B = 0.003501 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.313717 B = 7994.953022 C = 8796.130344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.496 6.496 5 C -0.164 4.164 6 C -0.024 4.024 7 C -0.115 4.115 8 C -0.080 4.080 9 C -0.105 4.105 10 C 0.020 3.980 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.039 4.039 20 C -0.221 4.221 21 C 0.176 3.824 22 O -0.289 6.289 23 C 0.022 3.978 24 H 0.061 0.939 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.145 0.855 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.719 16.067 7.003 21.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.385 6.385 5 C -0.166 4.166 6 C -0.042 4.042 7 C -0.115 4.115 8 C -0.118 4.118 9 C -0.142 4.142 10 C -0.017 4.017 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.718 3.282 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.057 4.057 20 C -0.240 4.240 21 C 0.129 3.871 22 O -0.200 6.200 23 C -0.073 4.073 24 H 0.080 0.920 25 H 0.120 0.880 26 H 0.079 0.921 27 H 0.162 0.838 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.077 16.249 7.038 21.434 hybrid contribution 0.342 -0.157 -1.000 1.068 sum -11.735 16.092 6.038 20.812 Atomic orbital electron populations 1.23230 0.76283 1.03628 1.02360 1.86574 1.23284 1.32781 1.84687 1.20921 0.88821 0.81447 0.73201 1.90853 1.66480 1.35704 1.45420 1.18368 0.89343 0.91940 1.16978 1.21283 0.93222 0.97149 0.92545 1.20114 0.93587 0.96151 1.01629 1.20756 0.98361 0.92571 1.00088 1.21655 1.00335 0.99892 0.92351 1.19130 0.94576 0.91080 0.96962 1.21312 1.32657 1.09088 0.92669 0.92685 1.25023 0.95930 0.96597 0.96949 1.69978 1.36427 1.16656 1.30509 0.86564 0.77925 0.78497 0.85197 1.19755 1.21049 1.21024 1.21197 1.00425 0.91120 0.92966 1.21158 0.91795 1.00112 1.10902 1.18932 0.89878 0.85515 0.92790 1.86298 1.34365 1.12283 1.87093 1.23141 0.98202 0.84546 1.01402 0.91995 0.88032 0.92058 0.83752 0.91107 0.91206 0.93347 0.93208 0.96515 0.96592 0.93104 0.84877 0.84704 0.88161 0.92536 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.36 -4.74 9.82 -40.64 -0.40 -5.14 16 3 C 0.51 7.75 7.89 34.46 0.27 8.02 16 4 O -0.50 -8.42 14.95 -26.60 -0.40 -8.82 16 5 C -0.16 -2.41 5.88 -104.86 -0.62 -3.03 16 6 C -0.02 -0.34 9.25 -39.18 -0.36 -0.70 16 7 C -0.11 -1.63 5.13 -104.67 -0.54 -2.17 16 8 C -0.08 -1.28 5.34 -27.88 -0.15 -1.43 16 9 C -0.10 -2.09 5.13 -26.73 -0.14 -2.22 16 10 C 0.02 0.49 4.97 -27.88 -0.14 0.36 16 11 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 15 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 C -0.04 -0.49 9.68 -39.53 -0.38 -0.87 16 20 C -0.22 -2.59 9.03 -39.48 -0.36 -2.95 16 21 C 0.18 2.42 6.70 -38.67 -0.26 2.16 16 22 O -0.29 -3.88 8.57 -40.51 -0.35 -4.23 16 23 C 0.02 0.19 9.81 101.05 0.99 1.18 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.14 1.92 7.61 -52.49 -0.40 1.52 16 28 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 29 H 0.07 1.06 8.08 -51.93 -0.42 0.65 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.14 1.19 6.30 -52.49 -0.33 0.86 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 39 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 LS Contribution 336.06 15.07 5.06 5.06 Total: -1.00 -33.41 336.06 -7.09 -40.50 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -5.71 Total: -4.22 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -1.02 Total: -13.68 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -1.14 Total: -18.19 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.41 -7.09 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.727 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds