Wall clock time and date at job start Mon Mar 30 2020 23:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34755 * 117.00145 * 2 1 4 4 O 1.21511 * 119.99447 * 0.02562 * 3 2 1 5 5 C 1.47393 * 120.00176 * 179.97438 * 3 2 1 6 6 C 1.39768 * 120.19798 * 0.02562 * 5 3 2 7 7 C 1.37765 * 119.90184 * 179.97438 * 6 5 3 8 8 C 1.50703 * 119.84496 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46946 * 90.00267 * 8 7 6 10 10 C 1.52997 * 109.46947 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99848 * 15 13 11 18 18 H 1.48501 * 109.47057 * 239.99829 * 15 13 11 19 19 C 1.38571 * 120.30777 * 0.27395 * 7 6 5 20 20 C 1.38052 * 120.40200 * 359.44302 * 19 7 6 21 21 C 1.38704 * 120.08700 * 0.55670 * 20 19 7 22 22 O 1.35642 * 120.15426 * 179.69823 * 21 20 19 23 23 C 1.42906 * 116.99831 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47315 * 59.99995 * 1 2 3 25 25 H 1.09000 * 109.47247 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47514 * 299.99509 * 1 2 3 27 27 H 1.08000 * 120.04678 * 359.97438 * 6 5 3 28 28 H 1.08992 * 109.46894 * 329.99986 * 8 7 6 29 29 H 1.08996 * 109.46805 * 210.00136 * 8 7 6 30 30 H 1.09001 * 109.47372 * 60.00128 * 9 8 7 31 31 H 1.09004 * 109.47108 * 299.99872 * 9 8 7 32 32 H 1.09001 * 109.46832 * 59.99979 * 10 9 8 33 33 H 1.09000 * 109.47611 * 300.00276 * 10 9 8 34 34 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 35 35 H 1.07999 * 119.79701 * 179.70531 * 19 7 6 36 36 H 1.07997 * 119.95298 * 180.25136 * 20 19 7 37 37 H 1.08998 * 109.46984 * 179.97438 * 23 22 21 38 38 H 1.08994 * 109.47032 * 299.99832 * 23 22 21 39 39 H 1.09005 * 109.46805 * 59.99626 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.3010 0.1083 0.0006 7 6 5.6763 0.1875 0.0006 8 6 6.5002 -1.0744 0.0012 9 6 6.7791 -1.5020 -1.4411 10 6 7.6161 -2.7827 -1.4405 11 6 7.8903 -3.2043 -2.8612 12 1 7.5063 -2.6172 -3.6823 13 6 8.6313 -4.3395 -3.1126 14 7 9.0984 -5.0547 -2.1126 15 14 8.9718 -4.8616 -4.8735 16 1 8.3400 -3.8952 -5.8073 17 1 10.4380 -4.8897 -5.1069 18 1 8.4075 -6.2154 -5.1063 19 6 6.3057 1.4220 0.0063 20 6 5.5622 2.5852 0.0005 21 6 4.1765 2.5248 0.0005 22 8 3.4446 3.6669 0.0010 23 6 4.1667 4.9001 0.0008 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 3.8148 -0.8561 0.0006 28 1 5.9537 -1.8649 0.5153 29 1 7.4440 -0.8918 0.5149 30 1 7.3257 -0.7114 -1.9553 31 1 5.8353 -1.6846 -1.9549 32 1 7.0698 -3.5735 -0.9262 33 1 8.5599 -2.5998 -0.9268 34 1 9.6201 -5.8532 -2.2896 35 1 7.3844 1.4745 0.0111 36 1 6.0602 3.5435 0.0009 37 1 3.4635 5.7328 0.0008 38 1 4.7940 4.9538 0.8905 39 1 4.7934 4.9540 -0.8894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:51 Heat of formation + Delta-G solvation = -134.422647 kcal Electronic energy + Delta-G solvation = -20862.134712 eV Core-core repulsion = 17540.968705 eV Total energy + Delta-G solvation = -3321.166007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83201 -40.62559 -38.92660 -37.38426 -36.18724 -34.31945 -32.69512 -31.52101 -28.96964 -28.57113 -27.63933 -25.23784 -25.03857 -22.84132 -22.12008 -21.21251 -19.33068 -18.60345 -18.40618 -17.70242 -17.42584 -17.04445 -16.62108 -16.51133 -15.68180 -15.47428 -15.35277 -14.61593 -14.49872 -14.41828 -14.31849 -14.10120 -13.35747 -13.19702 -13.13642 -12.96165 -12.75097 -12.53684 -12.52715 -12.33597 -12.18754 -11.83152 -11.78181 -11.51395 -11.33834 -11.25120 -11.03346 -10.51904 -10.15491 -9.15128 -8.16865 -6.27179 -0.32941 0.33873 1.41237 1.41958 1.49873 1.54931 1.72294 2.24898 2.43286 2.68909 3.16260 3.62202 3.78081 3.85236 4.05596 4.28409 4.31298 4.32982 4.33758 4.37947 4.39824 4.52099 4.62037 4.68858 4.72632 4.81286 4.83270 5.04533 5.09446 5.15815 5.29409 5.32331 5.34669 5.58349 5.60048 5.66981 5.85348 5.92519 6.30344 6.32732 6.72578 6.90589 7.41883 8.94722 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019558 B = 0.003501 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.313717 B = 7994.953022 C = 8796.130344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.509 3.491 4 O -0.523 6.523 5 C -0.188 4.188 6 C -0.025 4.025 7 C -0.128 4.128 8 C -0.069 4.069 9 C -0.091 4.091 10 C 0.022 3.978 11 C -0.542 4.542 12 H 0.057 0.943 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.961 3.039 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.279 1.279 19 C -0.034 4.034 20 C -0.211 4.211 21 C 0.172 3.828 22 O -0.314 6.314 23 C 0.011 3.989 24 H 0.061 0.939 25 H 0.132 0.868 26 H 0.064 0.936 27 H 0.144 0.856 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.045 0.955 32 H -0.007 1.007 33 H -0.004 1.004 34 H 0.263 0.737 35 H 0.154 0.846 36 H 0.169 0.831 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 17.372 6.388 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.280 6.280 3 C 0.356 3.644 4 O -0.413 6.413 5 C -0.190 4.190 6 C -0.043 4.043 7 C -0.128 4.128 8 C -0.106 4.106 9 C -0.129 4.129 10 C -0.015 4.015 11 C -0.580 4.580 12 H 0.075 0.925 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.786 3.214 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.205 1.205 19 C -0.052 4.052 20 C -0.230 4.230 21 C 0.125 3.875 22 O -0.226 6.226 23 C -0.083 4.083 24 H 0.080 0.920 25 H 0.150 0.850 26 H 0.083 0.917 27 H 0.162 0.838 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.011 0.989 33 H 0.015 0.985 34 H 0.072 0.928 35 H 0.172 0.828 36 H 0.186 0.814 37 H 0.133 0.867 38 H 0.093 0.907 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.836 17.560 6.426 22.130 hybrid contribution 0.222 -0.510 -0.775 0.954 sum -11.614 17.050 5.651 21.389 Atomic orbital electron populations 1.23548 0.74398 1.05712 1.02567 1.86565 1.25240 1.31995 1.84237 1.21110 0.89186 0.81530 0.72567 1.90823 1.67049 1.36487 1.46980 1.18533 0.89256 0.92789 1.18416 1.21268 0.93324 0.97185 0.92538 1.19935 0.93322 0.96000 1.03576 1.20539 0.99194 0.93634 0.97255 1.21434 0.98945 0.97238 0.95286 1.19054 0.94230 0.93012 0.95238 1.21764 1.32730 1.09462 0.94021 0.92521 1.25936 0.95672 0.96658 1.01501 1.70098 1.37134 1.17197 1.32884 0.85459 0.77992 0.78193 0.79771 1.18803 1.20301 1.20461 1.21458 1.01572 0.90586 0.91597 1.21453 0.90889 1.01286 1.09346 1.19173 0.90714 0.85521 0.92109 1.86275 1.36015 1.13462 1.86808 1.23485 0.98988 0.82897 1.02920 0.91992 0.85038 0.91700 0.83779 0.91231 0.90399 0.92998 0.93645 0.98859 0.98521 0.92832 0.82803 0.81401 0.86704 0.90741 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.57 113.37 1.20 1.77 16 2 O -0.36 -9.67 9.82 -56.66 -0.56 -10.22 16 3 C 0.51 15.54 7.89 70.23 0.55 16.10 16 4 O -0.52 -17.89 14.95 26.80 0.40 -17.49 16 5 C -0.19 -5.45 5.88 -20.02 -0.12 -5.57 16 6 C -0.02 -0.70 9.25 22.53 0.21 -0.49 16 7 C -0.13 -3.49 5.13 -19.90 -0.10 -3.59 16 8 C -0.07 -2.16 5.34 29.85 0.16 -2.00 16 9 C -0.09 -3.63 5.13 30.59 0.16 -3.47 16 10 C 0.02 1.12 4.97 29.85 0.15 1.27 16 11 C -0.54 -30.81 9.11 25.60 0.23 -30.58 16 12 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 13 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 14 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 15 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 C -0.03 -0.77 9.68 22.31 0.22 -0.56 16 20 C -0.21 -4.37 9.03 22.34 0.20 -4.17 16 21 C 0.17 4.49 6.70 22.86 0.15 4.65 16 22 O -0.31 -8.01 8.57 -68.64 -0.59 -8.60 16 23 C 0.01 0.16 9.81 113.37 1.11 1.27 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.14 3.87 7.61 -2.91 -0.02 3.85 16 28 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 29 H 0.08 2.30 8.08 -2.39 -0.02 2.28 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 32 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.17 2.27 6.30 -2.91 -0.02 2.26 16 37 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 39 H 0.07 0.81 7.66 -2.38 -0.02 0.79 16 Total: -1.00 -72.43 336.06 7.18 -65.25 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.03 Total: 5.89 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 4.58 Total: -24.92 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.28 Total: -56.20 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.74 Total: -36.31 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -72.43 7.18 -65.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.175 kcal (2) G-P(sol) polarization free energy of solvation -72.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds