Wall clock time and date at job start Mon Mar 30 2020 23:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35705 * 116.99910 * 180.02562 * 3 2 1 5 5 C 1.39033 * 119.90397 * 359.72091 * 4 3 2 6 6 C 1.37665 * 120.08929 * 179.76568 * 5 4 3 7 7 C 1.39812 * 119.90550 * 0.53593 * 6 5 4 8 8 C 1.47466 * 120.09227 * 179.74704 * 7 6 5 9 9 O 1.21507 * 120.00021 * 179.97438 * 8 7 6 10 10 O 1.34750 * 119.99538 * 359.97235 * 8 7 6 11 11 C 1.39775 * 119.81506 * 359.71790 * 7 6 5 12 12 C 1.37699 * 119.90621 * 0.02562 * 11 7 6 13 13 C 1.50698 * 119.95534 * 179.97438 * 12 11 7 14 14 C 1.53008 * 109.47116 * 265.02312 * 13 12 11 15 15 C 1.52999 * 109.46920 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.46909 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99955 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00182 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00138 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99838 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47182 * 90.00057 * 20 18 16 22 22 H 1.48506 * 109.47425 * 210.00095 * 20 18 16 23 23 H 1.48500 * 109.47457 * 330.00099 * 20 18 16 24 24 H 1.08994 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47084 * 299.99957 * 1 2 3 26 26 H 1.08996 * 109.47090 * 59.99784 * 1 2 3 27 27 H 1.08999 * 109.47084 * 240.00043 * 2 1 3 28 28 H 1.08998 * 109.47592 * 120.00144 * 2 1 3 29 29 H 1.07996 * 119.95579 * 0.02562 * 5 4 3 30 30 H 1.08000 * 120.04544 * 180.23312 * 6 5 4 31 31 H 0.96704 * 116.99573 * 180.02562 * 10 8 7 32 32 H 1.07999 * 120.04742 * 180.02562 * 11 7 6 33 33 H 1.09000 * 109.47128 * 25.01982 * 13 12 11 34 34 H 1.09000 * 109.47311 * 145.02324 * 13 12 11 35 35 H 1.09000 * 109.46853 * 299.99839 * 14 13 12 36 36 H 1.09000 * 109.47021 * 59.99834 * 14 13 12 37 37 H 1.08992 * 109.47167 * 299.99901 * 15 14 13 38 38 H 1.09000 * 109.47115 * 60.00252 * 15 14 13 39 39 H 0.96999 * 120.00003 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5251 -0.0005 5 6 4.1967 0.4211 0.0048 6 6 5.5621 0.5970 -0.0006 7 6 6.0986 1.8881 -0.0001 8 6 7.5605 2.0813 -0.0003 9 8 8.0249 3.2041 -0.0003 10 8 8.3812 1.0126 -0.0003 11 6 5.2453 2.9952 -0.0002 12 6 3.8808 2.8104 -0.0001 13 6 2.9598 4.0032 0.0005 14 6 2.5492 4.3299 1.4378 15 6 1.6147 5.5413 1.4383 16 6 1.2098 5.8626 2.8539 17 1 1.5822 5.2630 3.6714 18 6 0.3641 6.9221 3.1054 19 7 0.0111 7.2028 4.3408 20 14 -0.2793 7.9595 1.6915 21 1 -1.5538 7.3823 1.1939 22 1 -0.5155 9.3477 2.1635 23 1 0.7199 7.9736 0.5930 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7815 -0.5758 0.0090 30 1 6.2179 -0.2611 -0.0002 31 1 9.3320 1.1893 0.0000 32 1 5.6557 3.9942 -0.0002 33 1 3.4749 4.8601 -0.4339 34 1 2.0712 3.7765 -0.5887 35 1 2.0342 3.4730 1.8721 36 1 3.4379 4.5566 2.0269 37 1 2.1301 6.3979 1.0041 38 1 0.7261 5.3149 0.8491 39 1 -0.5836 7.9484 4.5178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:59 Heat of formation + Delta-G solvation = -150.352754 kcal Electronic energy + Delta-G solvation = -21014.080351 eV Core-core repulsion = 17692.223562 eV Total energy + Delta-G solvation = -3321.856788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.69148 -40.80920 -38.53416 -37.04587 -36.53871 -34.62951 -32.89523 -32.22657 -31.12579 -28.84030 -25.73965 -25.27575 -24.37013 -22.42052 -21.97755 -21.57640 -19.24045 -19.06166 -18.75679 -17.97784 -17.11678 -17.06681 -16.60787 -16.35032 -15.66671 -15.58928 -14.94803 -14.77725 -14.63041 -14.45772 -14.25109 -13.83761 -13.59775 -13.32979 -13.13103 -13.06592 -12.74619 -12.66514 -12.50952 -12.41928 -11.99167 -11.78994 -11.72663 -11.66053 -11.42088 -11.34138 -11.31959 -10.75695 -9.96930 -9.26197 -8.29093 -6.33187 -0.29551 0.26565 1.35811 1.38306 1.50657 1.50970 2.07348 2.21186 2.37156 2.69140 3.06217 3.62768 3.74146 4.01892 4.09783 4.10480 4.14623 4.23774 4.30939 4.39711 4.47277 4.52451 4.69687 4.82728 4.88199 4.97130 4.99661 5.08327 5.12213 5.14754 5.20395 5.30548 5.35622 5.53102 5.58447 5.61146 5.67113 5.69678 6.29459 6.38540 6.74282 6.99400 7.31288 8.88127 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014289 B = 0.004523 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.108922 B = 6189.570546 C = 7676.070581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.042 3.958 3 O -0.323 6.323 4 C 0.167 3.833 5 C -0.218 4.218 6 C -0.013 4.013 7 C -0.187 4.187 8 C 0.538 3.462 9 O -0.556 6.556 10 O -0.501 6.501 11 C -0.024 4.024 12 C -0.137 4.137 13 C -0.065 4.065 14 C -0.083 4.083 15 C -0.011 4.011 16 C -0.534 4.534 17 H 0.027 0.973 18 C 0.003 3.997 19 N -0.954 5.954 20 Si 0.953 3.047 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.246 1.246 24 H 0.106 0.894 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.169 0.831 30 H 0.169 0.831 31 H 0.433 0.567 32 H 0.133 0.867 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.021 0.979 38 H 0.020 0.980 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.047 -20.317 -14.489 26.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.032 4.032 3 O -0.236 6.236 4 C 0.119 3.881 5 C -0.236 4.236 6 C -0.031 4.031 7 C -0.189 4.189 8 C 0.385 3.615 9 O -0.450 6.450 10 O -0.315 6.315 11 C -0.042 4.042 12 C -0.137 4.137 13 C -0.102 4.102 14 C -0.121 4.121 15 C -0.048 4.048 16 C -0.571 4.571 17 H 0.045 0.955 18 C -0.194 4.194 19 N -0.595 5.595 20 Si 0.776 3.224 21 H -0.189 1.189 22 H -0.209 1.209 23 H -0.169 1.169 24 H 0.124 0.876 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.186 0.814 30 H 0.186 0.814 31 H 0.295 0.705 32 H 0.151 0.849 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.491 -19.874 -14.388 26.307 hybrid contribution 0.243 0.870 0.259 0.940 sum 9.734 -19.004 -14.129 25.603 Atomic orbital electron populations 1.21831 0.92252 1.04195 1.02817 1.23202 0.96563 0.80323 1.03114 1.86146 1.18609 1.31998 1.86874 1.19358 0.83257 0.93742 0.91706 1.21522 0.93677 0.98943 1.09477 1.21463 0.94912 0.96097 0.90626 1.18973 0.89076 0.95327 1.15504 1.20759 0.88074 0.81736 0.70958 1.90894 1.78380 1.26974 1.48704 1.84495 1.24762 1.37003 1.85233 1.20980 0.91284 0.99073 0.92901 1.19281 0.93710 0.93424 1.07329 1.20430 0.98074 0.94621 0.97120 1.21234 0.98096 0.97443 0.95297 1.19536 0.95520 0.95122 0.94614 1.21518 1.28308 1.13921 0.93402 0.95494 1.26057 0.96128 0.98630 0.98555 1.70080 1.36926 1.30771 1.21679 0.85616 0.79654 0.77500 0.79648 1.18896 1.20862 1.16947 0.87570 0.93100 0.91935 0.89423 0.90532 0.81383 0.81361 0.70534 0.84924 0.90605 0.90613 0.93893 0.94107 0.96104 0.96191 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 2 C 0.04 0.70 5.45 71.98 0.39 1.09 16 3 O -0.32 -8.47 9.25 -90.25 -0.83 -9.31 16 4 C 0.17 4.30 6.67 22.64 0.15 4.45 16 5 C -0.22 -4.09 9.01 22.33 0.20 -3.89 16 6 C -0.01 -0.24 9.61 22.52 0.22 -0.02 16 7 C -0.19 -4.55 5.87 -20.09 -0.12 -4.66 16 8 C 0.54 12.71 8.26 70.25 0.58 13.29 16 9 O -0.56 -17.18 17.13 19.81 0.34 -16.84 16 10 O -0.50 -7.34 12.67 -56.60 -0.72 -8.06 16 11 C -0.02 -0.69 9.21 22.51 0.21 -0.48 16 12 C -0.14 -4.08 5.14 -19.81 -0.10 -4.18 16 13 C -0.07 -2.20 5.06 29.85 0.15 -2.05 16 14 C -0.08 -3.52 5.14 30.60 0.16 -3.37 16 15 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 16 C -0.53 -32.42 9.66 25.60 0.25 -32.17 16 17 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 18 C 0.00 0.16 5.47 84.65 0.46 0.62 16 19 N -0.95 -61.80 13.96 21.45 0.30 -61.50 16 20 Si 0.95 45.69 27.47 68.60 1.88 47.58 16 21 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 24 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.09 1.00 7.66 -2.39 -0.02 0.98 16 28 H 0.08 1.07 7.64 -2.39 -0.02 1.05 16 29 H 0.17 1.96 6.28 -2.91 -0.02 1.94 16 30 H 0.17 2.03 7.60 -2.91 -0.02 2.01 16 31 H 0.43 2.46 9.11 -74.05 -0.67 1.79 16 32 H 0.13 3.97 7.64 -2.91 -0.02 3.95 16 33 H 0.08 2.41 8.05 -2.39 -0.02 2.39 16 34 H 0.08 2.50 7.68 -2.39 -0.02 2.48 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 38 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 39 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -78.29 333.55 4.71 -73.58 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.33 Total: 8.03 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 3.41 Total: -33.49 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.30 Total: -61.50 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -1.21 Total: -34.21 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.58 kcal Total: -78.29 4.71 -73.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.769 kcal (2) G-P(sol) polarization free energy of solvation -78.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds