Wall clock time and date at job start Mon Mar 30 2020 23:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34706 * 117.00437 * 2 1 4 4 O 1.21477 * 119.99835 * 0.02562 * 3 2 1 5 5 C 1.47733 * 120.00382 * 180.02562 * 3 2 1 6 6 C 1.39658 * 120.12483 * 179.97438 * 5 3 2 7 7 C 1.37950 * 119.95806 * 180.02562 * 6 5 3 8 8 C 1.50696 * 119.89129 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47177 * 89.99552 * 8 7 6 10 10 C 1.52997 * 109.47328 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47160 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00065 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99795 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99978 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00318 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47098 * 89.99896 * 15 13 11 17 17 H 1.48501 * 109.47373 * 210.00319 * 15 13 11 18 18 H 1.48506 * 109.47151 * 330.00412 * 15 13 11 19 19 C 1.38297 * 120.21204 * 359.97438 * 7 6 5 20 20 C 1.38810 * 120.25118 * 0.02562 * 19 7 6 21 21 O 1.35919 * 119.97943 * 180.02562 * 20 19 7 22 22 C 1.42907 * 116.99783 * 180.02562 * 21 20 19 23 23 C 1.38475 * 120.03820 * 359.97438 * 20 19 7 24 24 H 1.09000 * 109.47080 * 59.99607 * 1 2 3 25 25 H 1.09002 * 109.47162 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46494 * 299.99555 * 1 2 3 27 27 H 1.07999 * 120.01612 * 359.97438 * 6 5 3 28 28 H 1.09001 * 109.47180 * 209.99557 * 8 7 6 29 29 H 1.08999 * 109.47244 * 330.00159 * 8 7 6 30 30 H 1.09001 * 109.47070 * 300.00073 * 9 8 7 31 31 H 1.09003 * 109.46979 * 60.00018 * 9 8 7 32 32 H 1.09001 * 109.46993 * 299.99983 * 10 9 8 33 33 H 1.08995 * 109.47079 * 59.99769 * 10 9 8 34 34 H 0.97001 * 120.00091 * 179.97438 * 14 13 11 35 35 H 1.08002 * 119.86907 * 179.97438 * 19 7 6 36 36 H 1.08991 * 109.47009 * 180.02562 * 22 21 20 37 37 H 1.09002 * 109.46488 * 299.99446 * 22 21 20 38 38 H 1.08997 * 109.46910 * 59.99536 * 22 21 20 39 39 H 1.08005 * 120.10642 * 180.27760 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4022 2.2190 0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.1758 2.5205 -0.0011 7 6 5.5536 2.5886 -0.0022 8 6 6.2391 3.9307 -0.0022 9 6 6.4722 4.3843 1.4404 10 6 7.1676 5.7471 1.4404 11 6 7.3977 6.1936 2.8612 12 1 7.0801 5.5678 3.6821 13 6 8.0146 7.4007 3.1131 14 7 8.2159 7.7902 4.3531 15 14 8.5659 8.4822 1.6934 16 1 7.4652 9.4058 1.3183 17 1 9.7553 9.2707 2.1044 18 1 8.9154 7.6300 0.5285 19 6 6.3077 1.4294 -0.0022 20 6 5.6839 0.1893 -0.0016 21 8 6.4305 -0.9465 -0.0011 22 6 5.7228 -2.1880 -0.0012 23 6 4.3015 0.1088 -0.0006 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 3.5898 3.4277 -0.0015 28 1 7.1966 3.8496 -0.5167 29 1 5.6114 4.6593 -0.5152 30 1 5.5147 4.4654 1.9549 31 1 7.0999 3.6557 1.9535 32 1 8.1250 5.6664 0.9257 33 1 6.5396 6.4755 0.9274 34 1 8.6503 8.6392 4.5303 35 1 7.3861 1.4892 -0.0034 36 1 6.4356 -3.0125 -0.0003 37 1 5.0962 -2.2489 0.8887 38 1 5.0967 -2.2493 -0.8913 39 1 3.8150 -0.8555 0.0044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:54 Heat of formation + Delta-G solvation = -114.357738 kcal Electronic energy + Delta-G solvation = -20722.827928 eV Core-core repulsion = 17402.532000 eV Total energy + Delta-G solvation = -3320.295927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.86417 -39.93403 -37.90307 -36.57095 -34.76588 -32.67510 -31.32273 -30.32892 -28.14690 -27.69982 -26.94645 -24.29824 -23.46941 -21.48213 -20.72919 -20.04307 -18.15524 -17.64687 -16.61498 -16.56747 -16.45116 -16.15081 -16.05498 -15.90177 -14.37085 -14.34077 -13.92068 -13.69303 -13.54840 -13.39787 -13.03190 -12.58999 -12.41565 -12.21900 -12.07630 -11.75338 -11.56927 -11.47535 -11.26723 -11.05664 -10.92017 -10.74877 -10.62708 -9.90730 -9.71899 -9.69100 -9.17151 -8.83902 -8.50417 -8.35589 -6.00761 -3.98640 0.55572 1.28568 2.40839 2.44265 3.06337 3.33643 3.40791 3.44252 3.64917 4.38478 4.48354 4.65529 4.81955 4.83867 4.91340 4.92476 4.98211 5.08210 5.19458 5.22998 5.26422 5.33038 5.36497 5.51394 5.80509 5.88553 5.97965 6.05247 6.16820 6.18924 6.37342 6.55585 6.68762 6.69439 6.93082 7.18229 7.34080 7.46385 7.53821 7.83062 8.57960 9.04734 9.61733 11.12848 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018486 B = 0.003628 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.305248 B = 7714.924646 C = 8712.363684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.510 3.490 4 O -0.500 6.500 5 C -0.090 4.090 6 C -0.085 4.085 7 C -0.038 4.038 8 C -0.088 4.088 9 C -0.097 4.097 10 C -0.015 4.015 11 C -0.520 4.520 12 H 0.071 0.929 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.265 1.265 19 C -0.111 4.111 20 C 0.116 3.884 21 O -0.314 6.314 22 C 0.026 3.974 23 C -0.166 4.166 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.141 0.859 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.016 0.984 33 H 0.012 0.988 34 H 0.262 0.738 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.740 -20.937 -12.267 26.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.355 3.645 4 O -0.388 6.388 5 C -0.091 4.091 6 C -0.104 4.104 7 C -0.038 4.038 8 C -0.125 4.125 9 C -0.135 4.135 10 C -0.052 4.052 11 C -0.558 4.558 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.189 1.189 19 C -0.130 4.130 20 C 0.071 3.929 21 O -0.228 6.228 22 C -0.069 4.069 23 C -0.185 4.185 24 H 0.082 0.918 25 H 0.120 0.880 26 H 0.083 0.917 27 H 0.159 0.841 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.157 0.843 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.696 -20.533 -12.156 26.149 hybrid contribution -0.207 0.497 -0.530 0.755 sum -10.903 -20.035 -12.686 26.100 Atomic orbital electron populations 1.23288 0.75965 1.03689 1.02805 1.86530 1.23580 1.32828 1.84494 1.21246 0.89143 0.81397 0.72754 1.90856 1.66678 1.35936 1.45319 1.18765 0.88466 0.94422 1.07469 1.21143 0.94201 0.96639 0.98391 1.19892 0.92582 0.95786 0.95583 1.20887 1.00039 0.91164 1.00402 1.21485 1.00916 0.98931 0.92144 1.19597 0.95352 0.92352 0.97899 1.21163 1.38571 1.04570 0.91485 0.91075 1.25049 0.95424 0.97683 0.95462 1.69923 1.43676 1.22024 1.18792 0.86764 0.78403 0.80743 0.83283 1.20320 1.21469 1.18950 1.20668 1.01233 0.88861 1.02192 1.18836 0.89403 0.86873 0.97812 1.86108 1.35024 1.12737 1.88928 1.23077 0.98425 0.83959 1.01471 1.21376 0.92636 0.98913 1.05557 0.91774 0.88017 0.91677 0.84150 0.90691 0.90688 0.92511 0.92460 0.96539 0.96963 0.92791 0.84260 0.88175 0.92501 0.92607 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.36 -3.90 9.82 -40.51 -0.40 -4.30 16 3 C 0.51 6.86 7.90 34.61 0.27 7.13 16 4 O -0.50 -7.93 16.13 -19.25 -0.31 -8.24 16 5 C -0.09 -1.20 5.87 -105.00 -0.62 -1.82 16 6 C -0.09 -1.22 9.24 -39.16 -0.36 -1.58 16 7 C -0.04 -0.55 5.13 -104.71 -0.54 -1.08 16 8 C -0.09 -1.35 5.34 -27.88 -0.15 -1.50 16 9 C -0.10 -1.90 5.14 -26.73 -0.14 -2.04 16 10 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 11 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 12 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 13 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 14 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 15 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 18 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 19 C -0.11 -1.48 9.63 -39.35 -0.38 -1.86 16 20 C 0.12 1.44 6.68 -39.28 -0.26 1.18 16 21 O -0.31 -3.57 10.50 -19.49 -0.20 -3.77 16 22 C 0.03 0.18 9.81 101.05 0.99 1.18 16 23 C -0.17 -1.95 8.60 -39.01 -0.34 -2.29 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.14 2.03 7.65 -52.49 -0.40 1.63 16 28 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 29 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 33 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 38 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 39 H 0.14 1.32 5.84 -52.48 -0.31 1.02 16 LS Contribution 334.63 15.07 5.04 5.04 Total: -1.00 -33.60 334.63 -6.41 -40.00 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -5.65 Total: -3.10 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.99 Total: -15.33 kcal Atomic # 7 Polarization: -28.32 SS G_CDS: 0.77 Total: -27.54 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.91 Total: -16.31 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.60 -6.41 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.354 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds